AT1G63930

Protein BYPASS1-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015381
Physical Location & Seq
Forward (+)
23727794 .. 23729403
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63930.1

Sequence Viewer

Length: 1248 bp
ATGAGACCTGCGCAAGATAATCAAGGCTCGTTCCTTGGCCGGATTAGTATCCGTCGCAACCAATTCGTCGACGTCAACAACGAACAAGAACAAGAAGATCTCGAGCTTTTCCAAAAACACATCGCCGATCGTTTCACCGAGCTTCTTTCTCCTCCTCAACCACCACCGTCAGATGAAATTAACACGGTAGCTTCCGTAGCCGCGACGGAGCAGATTATGTCCGTGACTTGGCTTCGTAAGCTGATGGATGTTTTCCTCTGTTGCGAAGCTGAATTCAAAGCGATTTTGTTAATGGGTCGTGACCCGACCCAGATTTCTAAGCCGCCTTTTGACCGGTTAGTTCCTGAAATGTTAGACCGGTCGATTAAAGCGCTTGACATTTGTACCGCCGTTGTTAACGGTATCGATTCCGTTAGACATTACCAGCGTTTAGCTGAGATTGCTGTGACGGCTTTGGAGCAACGTCCGTTAGGTGACGGTAACGTGAGGAGAGCTAAACGCGCGTTGGCGAATCTCGTCGTCGCGTTGAGTCTCGAGGATAAAGAGAATGTTAGCGGCGGAGGTGGTGGCGGCGGCGGAGGGAATAAGACGACGGAGAGATCGTGGTCGTTTGGTCGTCGAAGCGGTGGATCATCGGCGGCGAGTAAAGGAGGAGCAACGATTGGTCAGCTCAAATCGTCGTCGTGGGCGGTTGGGAGAAATTGGTCGGCGGCGAAGCAGATCCACGCAATGACAGCGAATCTTACGCCGCCACGTGGTAACGAAGCGGCGGGATTGCCTCAACCAATGTTTATAATGAGTACGGTGATGGTTTTCGTAATGTGGGTGCTAACGGCGGCGGTTCCGTGTCAGGAGAGATCAGGATTAGCGAATCATTTACCAGTGCCGCCGAAACATTTGAATTGGGCTCAGAGTTTGATCGGAATCCATGAGAAAATCGGAGATGAGTGGAAGAAGAAAGAGAAGAAAGGATCTGCTGGATTGATGGAGGAGATGACGAGGATGGAGAAGCTAGGTCACTCGTTGATGGAATTCGCAGATGGATTTCATTATCCGGCGGAGAAAGATGCTGCTGAATCTGCGGCGGTGCAAGTGGCGGAGATGGCGGAGATATGCAGGAGAATGGAGGAGGAGCTTGTGCCGTTACAGCAACAGATCAGAGAAGTTTTTCATAGGATCGTGAGGAGTCGTGCGGAGATTCTCGAGGTGTTGGAGCAAGCCGGGAAAGTTTCGGCGCCAGTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

415

Amino Acids

45.64

Weight (kDa)

6.54

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 2 - 404 6.7e-189 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63930
fragaria_vesca FvH4_5g03120
malus_domestica MD06G1090100.v1.1 MD14G1111100.v1.1
prunus_persica Prupe.5G105900_v2.0.a1
pyrus_communis pycom06g08590 pycom14g10600
rosa_chinensis RchiOBHm_Chr7g0196671
rosa_laevigata RLG00000003997
rosa_multiflora Rmu_sc0006591.1_g000004
rosa_rugosa Rorug07G0035800
rosa_samantha Rh7AG159600 Rh7BG161500 Rh7CG168000 Rh7DG160800
rosa_wichuraiana Rw7G013960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 794
AatII GACGTC 1 cut(s) 75
Acc16I TGCGCA 1 cut(s) 12
Acc36I ACCTGC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 1234
AccI GTMKAC 1 cut(s) 69
AccII CGCG 4 cut(s) 203, 501, 503, 524
AclWI GGATC 4 cut(s) 637, 715, 979, 1184
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 2 cut(s) 272, 1031
AcvI CACGTG 1 cut(s) 755
AcyI GRCGYC 2 cut(s) 72, 1235
AfaI GTAC 2 cut(s) 385, 802
AfeI AGCGCT 1 cut(s) 372
AfiI CCNNNNNNNGG 2 cut(s) 228, 755
AgeI ACCGGT 2 cut(s) 333, 357
AgsI TTSAA 2 cut(s) 277, 901
Alw26I GTCTC 1 cut(s) 536
AlwI GGATC 4 cut(s) 637, 715, 979, 1184
Ama87I CYCGRG 3 cut(s) 101, 533, 1202
Aor51HI AGCGCT 1 cut(s) 372
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 1070
ApoI RAATTY 2 cut(s) 272, 1031
AsiGI ACCGGT 2 cut(s) 333, 357
Asp700I GAANNNNTTC 1 cut(s) 1167
AspLEI GCGC 4 cut(s) 13, 373, 503, 1237
AsuC2I CCSGG 1 cut(s) 1222
AsuHPI GGTGA 3 cut(s) 127, 485, 817
AvaI CYCGRG 3 cut(s) 101, 533, 1202
BaeI ACNNNNGTAYC 2 cut(s) 367, 400
BanI GGYRCC 1 cut(s) 1234
BanII GRGCYC 1 cut(s) 910
BbrPI CACGTG 1 cut(s) 755
BbvI GCAGC 1 cut(s) 1057
BccI CCATC 7 cut(s) 238, 802, 979, 997, 1021, 1034, 1096
BceAI ACGGC 4 cut(s) 374, 465, 849, 1126
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BciVI GTATCC 1 cut(s) 59
BcnI CCSGG 1 cut(s) 1222
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 1 cut(s) 1013
BfoI RGCGCY 2 cut(s) 374, 1238
BfuAI ACCTGC 1 cut(s) 16
BfuI GTATCC 1 cut(s) 59
BglII AGATCT 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 1222
BmeT110I CYCGRG 3 cut(s) 101, 533, 1202
BmiI GGNNCC 2 cut(s) 843, 1236
BmrFI CCNGG 1 cut(s) 1222
BmsI GCATC 1 cut(s) 1057
BpuMI CCSGG 1 cut(s) 1222
Bsa29I ATCGAT 1 cut(s) 405
BsaAI YACGTR 1 cut(s) 755
BsaBI GATNNNNATC 2 cut(s) 47, 923
BsaHI GRCGYC 2 cut(s) 72, 1235
BsaJI CCNNGG 1 cut(s) 34
BsaWI WCCGGW 2 cut(s) 333, 357
BsaXI ACNNNNNCTCC 2 cut(s) 587, 617
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 755
Bse118I RCCGGY 2 cut(s) 333, 357
Bse1I ACTGG 2 cut(s) 881, 1238
Bse3DI GCAATG 1 cut(s) 735
Bse8I GATNNNNATC 2 cut(s) 47, 923
BseCI ATCGAT 1 cut(s) 405
BseDI CCNNGG 1 cut(s) 34
BseGI GGATG 2 cut(s) 253, 1008
BseJI GATNNNNATC 2 cut(s) 47, 923
BseLI CCNNNNNNNGG 2 cut(s) 228, 755
BseMI GCAATG 1 cut(s) 735
BseMII CTCAG 2 cut(s) 426, 923
BseNI ACTGG 2 cut(s) 881, 1238
BseRI GAGGAG 8 cut(s) 141, 144, 502, 666, 1004, 1142, 1145, 1198
BseXI GCAGC 1 cut(s) 1057
Bsh1236I CGCG 4 cut(s) 203, 501, 503, 524
Bsh1285I CGRYCG 2 cut(s) 130, 362
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 1234
BshTI ACCGGT 2 cut(s) 333, 357
BshVI ATCGAT 1 cut(s) 405
BsiEI CGRYCG 2 cut(s) 130, 362
BsiHKCI CYCGRG 3 cut(s) 101, 533, 1202
BsiSI CCGG 5 cut(s) 40, 334, 358, 1055, 1221
BslI CCNNNNNNNGG 2 cut(s) 228, 755
BsmAI GTCTC 1 cut(s) 536
BsnI GGCC 1 cut(s) 39
BsoBI CYCGRG 3 cut(s) 101, 533, 1202
Bsp1286I GDGCHC 1 cut(s) 910
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 2 cut(s) 427, 922
BspDI ATCGAT 1 cut(s) 405
BspFNI CGCG 4 cut(s) 203, 501, 503, 524
BspLI GGNNCC 2 cut(s) 843, 1236
BspMI ACCTGC 1 cut(s) 16
BspPI GGATC 4 cut(s) 637, 715, 979, 1184
BspT107I GGYRCC 1 cut(s) 1234
BsrDI GCAATG 1 cut(s) 735
BsrFI RCCGGY 2 cut(s) 333, 357
BsrI ACTGG 2 cut(s) 881, 1238
BssAI RCCGGY 2 cut(s) 333, 357
BssECI CCNNGG 1 cut(s) 34
BssNI GRCGYC 2 cut(s) 72, 1235
BssT1I CCWWGG 1 cut(s) 34
Bst4CI ACNGT 5 cut(s) 168, 187, 401, 479, 805
BstACI GRCGYC 2 cut(s) 72, 1235
BstBAI YACGTR 1 cut(s) 755
BstC8I GCNNGC 1 cut(s) 1218
BstDEI CTNAG 3 cut(s) 318, 435, 909
BstF5I GGATG 2 cut(s) 253, 1008
BstFNI CGCG 4 cut(s) 203, 501, 503, 524
BstH2I RGCGCY 2 cut(s) 374, 1238
BstHHI GCGC 4 cut(s) 13, 373, 503, 1237
BstMAI GTCTC 1 cut(s) 536
BstMCI CGRYCG 2 cut(s) 130, 362
BstMWI GCNNNNNNNGC 9 cut(s) 197, 238, 440, 449, 500, 734, 1079, 1103, 1147
BstSCI CCNGG 1 cut(s) 1220
BstUI CGCG 4 cut(s) 203, 501, 503, 524
BstV1I GCAGC 1 cut(s) 1057
BstX2I RGATCY 3 cut(s) 97, 720, 971
BstYI RGATCY 3 cut(s) 97, 720, 971
Bsu15I ATCGAT 1 cut(s) 405
BsuI GTATCC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 39
BsuTUI ATCGAT 1 cut(s) 405
BtgZI GCGATG 1 cut(s) 106
BtsCI GGATG 2 cut(s) 253, 1008
BtsIMutI CAGTG 1 cut(s) 888
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 1218
CfoI GCGC 4 cut(s) 13, 373, 503, 1237
Cfr10I RCCGGY 2 cut(s) 333, 357
ClaI ATCGAT 1 cut(s) 405
Csp6I GTAC 2 cut(s) 384, 801
CspAI ACCGGT 2 cut(s) 333, 357
CviAII CATG 1 cut(s) 929
CviQI GTAC 2 cut(s) 384, 801
DdeI CTNAG 3 cut(s) 318, 435, 909
DinI GGCGCC 1 cut(s) 1236
EaeI YGGCCR 1 cut(s) 37
EciI GGCGGA 5 cut(s) 573, 591, 1073, 1112, 1121
Eco130I CCWWGG 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 910
Eco47III AGCGCT 1 cut(s) 372
Eco72I CACGTG 1 cut(s) 755
Eco88I CYCGRG 3 cut(s) 101, 533, 1202
EcoRI GAATTC 2 cut(s) 272, 1031
EcoT14I CCWWGG 1 cut(s) 34
EcoT38I GRGCYC 1 cut(s) 910
EgeI GGCGCC 1 cut(s) 1236
EheI GGCGCC 1 cut(s) 1236
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 1 cut(s) 932
FaiI YATR 5 cut(s) 218, 794, 930, 1114, 1173
FatI CATG 1 cut(s) 928
FauI CCCGC 1 cut(s) 763
FblI GTMKAC 1 cut(s) 69
FokI GGATG 2 cut(s) 260, 1015
FriOI GRGCYC 1 cut(s) 910
FspBI CTAG 1 cut(s) 1013
FspI TGCGCA 1 cut(s) 12
GlaI GCGC 4 cut(s) 12, 372, 502, 1236
HaeII RGCGCY 2 cut(s) 374, 1238
HaeIII GGCC 1 cut(s) 39
HapII CCGG 5 cut(s) 40, 334, 358, 1055, 1221
HhaI GCGC 4 cut(s) 13, 373, 503, 1237
Hin1I GRCGYC 2 cut(s) 72, 1235
Hin1II CATG 1 cut(s) 932
Hin6I GCGC 4 cut(s) 11, 371, 501, 1235
HinP1I GCGC 4 cut(s) 11, 371, 501, 1235
HincII GTYRAC 3 cut(s) 70, 76, 397
HindII GTYRAC 3 cut(s) 70, 76, 397
HinfI GANTC 9 cut(s) 407, 511, 529, 739, 871, 924, 1076, 1186, 1198
HpaI GTTAAC 1 cut(s) 397
HpaII CCGG 5 cut(s) 40, 334, 358, 1055, 1221
HphI GGTGA 3 cut(s) 127, 485, 817
Hpy166II GTNNAC 3 cut(s) 70, 76, 397
Hpy188I TCNGA 5 cut(s) 172, 912, 923, 941, 1160
Hpy188III TCNNGA 8 cut(s) 101, 299, 344, 533, 851, 861, 1180, 1202
Hpy8I GTNNAC 3 cut(s) 70, 76, 397
HpyCH4III ACNGT 5 cut(s) 168, 187, 401, 479, 805
HpyCH4IV ACGT 4 cut(s) 72, 463, 483, 754
HpyCH4V TGCA 2 cut(s) 1090, 1116
HpyF10VI GCNNNNNNNGC 9 cut(s) 197, 238, 440, 449, 500, 734, 1079, 1103, 1147
HpyF3I CTNAG 3 cut(s) 318, 435, 909
HpySE526I ACGT 4 cut(s) 72, 463, 483, 754
Hsp92I GRCGYC 2 cut(s) 72, 1235
Hsp92II CATG 1 cut(s) 932
HspAI GCGC 4 cut(s) 11, 371, 501, 1235
KasI GGCGCC 1 cut(s) 1234
KspAI GTTAAC 1 cut(s) 397
LmnI GCTCC 5 cut(s) 208, 457, 653, 1132, 1213
Lsp1109I GCAGC 1 cut(s) 1057
LweI GCATC 1 cut(s) 1057
MaeI CTAG 1 cut(s) 1013
MaeII ACGT 4 cut(s) 72, 463, 483, 754
MaeIII GTNAC 8 cut(s) 223, 299, 445, 473, 479, 758, 1016, 1143
MboII GAAGA 4 cut(s) 107, 964, 967, 976
MflI RGATCY 3 cut(s) 97, 720, 971
MhlI GDGCHC 1 cut(s) 910
MluCI AATT 6 cut(s) 62, 177, 272, 700, 901, 1031
Mly113I GGCGCC 1 cut(s) 1235
MlyI GAGTC 2 cut(s) 538, 1195
MmeI TCCRAC 1 cut(s) 1191
MroXI GAANNNNTTC 1 cut(s) 1167
MseI TTAA 4 cut(s) 180, 290, 366, 396
MspI CCGG 5 cut(s) 40, 334, 358, 1055, 1221
MspR9I CCNGG 1 cut(s) 1222
MvnI CGCG 4 cut(s) 203, 501, 503, 524
MwoI GCNNNNNNNGC 9 cut(s) 197, 238, 440, 449, 500, 734, 1079, 1103, 1147
NarI GGCGCC 1 cut(s) 1235
NciI CCSGG 1 cut(s) 1222
NlaIII CATG 1 cut(s) 932
NlaIV GGNNCC 2 cut(s) 843, 1236
NmuCI GTSAC 5 cut(s) 223, 299, 445, 473, 1016
NsbI TGCGCA 1 cut(s) 12
PaeR7I CTCGAG 3 cut(s) 101, 533, 1202
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 599
PdmI GAANNNNTTC 1 cut(s) 1167
PfeI GAWTC 7 cut(s) 407, 511, 739, 871, 924, 1076, 1198
PinAI ACCGGT 2 cut(s) 333, 357
Ple19I CGATCG 1 cut(s) 130
PleI GAGTC 2 cut(s) 537, 1194
PluTI GGCGCC 1 cut(s) 1238
PmaCI CACGTG 1 cut(s) 755
PmlI CACGTG 1 cut(s) 755
PpsI GAGTC 2 cut(s) 537, 1194
Ppu21I YACGTR 1 cut(s) 755
PsiI TTATAA 1 cut(s) 794
PspCI CACGTG 1 cut(s) 755
PspN4I GGNNCC 2 cut(s) 843, 1236
PsuI RGATCY 3 cut(s) 97, 720, 971
PvuI CGATCG 1 cut(s) 130
RsaI GTAC 2 cut(s) 385, 802
RsaNI GTAC 2 cut(s) 384, 801
SalI GTCGAC 1 cut(s) 68
SaqAI TTAA 4 cut(s) 180, 290, 366, 396
SchI GAGTC 2 cut(s) 538, 1195
ScrFI CCNGG 1 cut(s) 1222
SduI GDGCHC 1 cut(s) 910
SfaNI GCATC 1 cut(s) 1057
SfoI GGCGCC 1 cut(s) 1236
Sfr274I CTCGAG 3 cut(s) 101, 533, 1202
SgrDI CGTCGACG 1 cut(s) 68
SlaI CTCGAG 3 cut(s) 101, 533, 1202
SmlI CTYRAG 3 cut(s) 101, 533, 1202
SmoI CTYRAG 3 cut(s) 101, 533, 1202
Sse9I AATT 6 cut(s) 62, 177, 272, 700, 901, 1031
SspDI GGCGCC 1 cut(s) 1234
SspMI CTAG 1 cut(s) 1013
StyD4I CCNGG 1 cut(s) 1220
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 5 cut(s) 168, 187, 401, 479, 805
TaiI ACGT 4 cut(s) 75, 466, 486, 757
TaqI TCGA 7 cut(s) 69, 102, 362, 405, 534, 619, 1203
TasI AATT 6 cut(s) 62, 177, 272, 700, 901, 1031
TfiI GAWTC 7 cut(s) 407, 511, 739, 871, 924, 1076, 1198
Tru1I TTAA 4 cut(s) 180, 290, 366, 396
Tru9I TTAA 4 cut(s) 180, 290, 366, 396
TscAI CASTG 1 cut(s) 888
TseFI GTSAC 5 cut(s) 223, 299, 445, 473, 1016
TseI GCWGC 1 cut(s) 1070
Tsp45I GTSAC 5 cut(s) 223, 299, 445, 473, 1016
TspDTI ATGAA 3 cut(s) 189, 1037, 1160
TspGWI ACGGA 8 cut(s) 41, 184, 211, 221, 400, 456, 608, 834
TspRI CASTG 1 cut(s) 888
XapI RAATTY 2 cut(s) 272, 1031
XhoI CTCGAG 3 cut(s) 101, 533, 1202
XmiI GTMKAC 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 1167
XspI CTAG 1 cut(s) 1013
ZraI GACGTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.