FvH4_5g03120

Protein BYPASS1-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015381
Physical Location & Seq
Forward (+)
1875631 .. 1877409
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03120.t1

Sequence Viewer

Length: 1179 bp
ATGGTAGCAACCGATAACCAGAACTCCTTCCTCAACCGGATAAGCATCCGGCGAAACCAGGTCGTCACCATGGAAGGTAACCACGACCCAGAGATCGAAGACCTTGAACACTTCCAGAAACATGTCGCCGATCGCTTCCACGACCTTCTATCTCCTCCCGACGACTACCCCTCCGAGCCTTTCCTCTCCATTGCATGGATACGGAACCTTCTAGACGTTTTCCTCTGCTGCGAGGCCGAGTTCAAAGCCGTCGTCCTCATGGGCCGCGATCCGACTCAGATTACCAAGCCACCTCTCGACCGCTTGGTACCGGAGTTTCTTGACCGAGTTGTTAAGGCTTTGGACATCTGCAACGCTGTCTCCAACGGCGTTGAGTCGGTCAGACATTTCCAGAAGCTTGCTGAGATTGCGGTTTCGGCTTTGGAGCAGCGGCCGATCGGTGACGGGCAGGTAAGGCGAGCTAAGAAGGCGTTGAGTTCTTTGGTGACGGCGATGGCGATTGAGGACAAAGAAGGACAGACTAATAAGATGACGGAGAGGACGTGGTCGTTTGGTAGGAGGACAGGAGTTTCGGGGTCGAATAAGGACCGAGCCGCCGGGCATTTCCGGGTCTTGTCTTGGGGAATGTCCAAGGGGTGGTCCGCTGCAAAGCAGATACAAGCTATGTCGACGAACATGGTGGCGCCGAGAGGGAATGAGACGTCGAGTTTGGTCCAGCCGGTGTATATTATGAGCACTATTATGTTGTTTGTGATGTGGATATTAGTGACTGTTGTGCCCTGCCAGGAGAGGACGGGGCTGATGACGCATTTTCCGCTGCCGAGGAACTTGGTGTGGGCGCAGTCGTTGATTGGCTTGCAAGACAAGATAGCAGAGGAGTGGAAGAAGAAGGAGAAGAAATGCGCGGCGGGGCTAATGGAGGAGATGCAGAAGATGGAGAAACTAGGGCAGTCATTGATCGAGTTTGCGGATAGTTTTCAGTTTCCGGTAGAGGCAGGGAAGCTGGAGGAGGTGGCAGCGCAGGTGGCGGAGCTGGCGGAGATTTGTAGGAGGATGGAGGAAGGGTTGGTGCCTCTGCAACAACAGATAAGGGAACTGTTCCATAGAGCTGTGAGGAGCAGGATGGAAGTGCTTGAGGTTTTGGACCAAGGTGGTAAAGGTACTCCACCCATGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

393

Amino Acids

44.23

Weight (kDa)

6.29

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 1 - 381 2.9e-169 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63930
fragaria_vesca FvH4_5g03120
malus_domestica MD06G1090100.v1.1 MD14G1111100.v1.1
prunus_persica Prupe.5G105900_v2.0.a1
pyrus_communis pycom06g08590 pycom14g10600
rosa_chinensis RchiOBHm_Chr7g0196671
rosa_laevigata RLG00000003997
rosa_multiflora Rmu_sc0006591.1_g000004
rosa_rugosa Rorug07G0035800
rosa_samantha Rh7AG159600 Rh7BG161500 Rh7CG168000 Rh7DG160800
rosa_wichuraiana Rw7G013960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1012
AatII GACGTC 1 cut(s) 704
Acc36I ACCTGC 2 cut(s) 439, 1012
Acc65I GGTACC 1 cut(s) 307
AccB1I GGYRCC 3 cut(s) 307, 682, 1069
AccB7I CCANNNNNTGG 2 cut(s) 195, 636
AccI GTMKAC 1 cut(s) 668
AccII CGCG 2 cut(s) 267, 905
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 431
AcyI GRCGYC 2 cut(s) 683, 701
AfaI GTAC 2 cut(s) 309, 1162
AfiI CCNNNNNNNGG 2 cut(s) 195, 636
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 2 cut(s) 107, 244
AjiI CACGTC 1 cut(s) 543
AjnI CCWGG 2 cut(s) 57, 783
AluBI AGCT 6 cut(s) 397, 461, 662, 1003, 1033, 1109
AluI AGCT 6 cut(s) 397, 461, 662, 1003, 1033, 1109
Alw21I GWGCWC 1 cut(s) 737
Alw26I GTCTC 2 cut(s) 364, 692
AlwI GGATC 1 cut(s) 263
AoxI GGCC 3 cut(s) 234, 262, 431
ApeKI GCWGC 5 cut(s) 228, 427, 644, 817, 1016
ArsI GACNNNNNNTTYG 6 cut(s) 237, 269, 553, 585, 691, 723
Asp700I GAANNNNTTC 1 cut(s) 26
Asp718I GGTACC 1 cut(s) 307
AspLEI GCGC 4 cut(s) 685, 841, 905, 1021
AspS9I GGNCC 5 cut(s) 262, 586, 639, 712, 1144
AsuC2I CCSGG 2 cut(s) 598, 608
AsuHPI GGTGA 3 cut(s) 58, 452, 496
AvaII GGWCC 4 cut(s) 586, 639, 712, 1144
BaeGI GKGCMC 1 cut(s) 780
BaeI ACNNNNGTAYC 2 cut(s) 299, 332
BanI GGYRCC 3 cut(s) 307, 682, 1069
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 737
BbvI GCAGC 5 cut(s) 215, 439, 631, 804, 1028
BccI CCATC 4 cut(s) 487, 928, 1048, 1117
BceAI ACGGC 3 cut(s) 233, 382, 504
BciT130I CCWGG 2 cut(s) 59, 785
BciVI GTATCC 1 cut(s) 192
BcnI CCSGG 2 cut(s) 598, 608
BcoDI GTCTC 2 cut(s) 364, 692
BfaI CTAG 2 cut(s) 212, 944
BfoI RGCGCY 1 cut(s) 686
BfuAI ACCTGC 2 cut(s) 439, 1012
BfuI GTATCC 1 cut(s) 192
BisI GCNGC 9 cut(s) 229, 265, 428, 431, 594, 645, 818, 906, 1017
BlsI GCNGC 9 cut(s) 230, 266, 429, 432, 595, 646, 819, 907, 1018
Bme1390I CCNGG 4 cut(s) 59, 598, 608, 785
Bme18I GGWCC 4 cut(s) 586, 639, 712, 1144
BmgBI CACGTC 1 cut(s) 543
BmgT120I GGNCC 5 cut(s) 262, 586, 639, 712, 1144
BmiI GGNNCC 4 cut(s) 206, 309, 684, 1071
BmrFI CCNGG 4 cut(s) 59, 598, 608, 785
BmsI GCATC 2 cut(s) 54, 915
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 1025
BpuEI CTTGAG 1 cut(s) 1154
BpuMI CCSGG 2 cut(s) 598, 608
BsaBI GATNNNNATC 1 cut(s) 44
BsaHI GRCGYC 2 cut(s) 683, 701
BsaJI CCNNGG 4 cut(s) 69, 630, 821, 1147
BsaWI WCCGGW 3 cut(s) 36, 310, 985
Bsc4I CCNNNNNNNGG 2 cut(s) 195, 636
Bse118I RCCGGY 1 cut(s) 718
Bse3DI GCAATG 1 cut(s) 189
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 2 cut(s) 59, 785
BseDI CCNNGG 4 cut(s) 69, 630, 821, 1147
BseGI GGATG 3 cut(s) 45, 1059, 1128
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 2 cut(s) 195, 636
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 2 cut(s) 290, 393
BseRI GAGGAG 5 cut(s) 144, 890, 935, 1022, 1129
BseSI GKGCMC 1 cut(s) 780
BseX3I CGGCCG 1 cut(s) 431
BseXI GCAGC 5 cut(s) 215, 439, 631, 804, 1028
Bsh1236I CGCG 2 cut(s) 267, 905
Bsh1285I CGRYCG 4 cut(s) 133, 301, 434, 438
BshFI GGCC 3 cut(s) 236, 264, 433
BshNI GGYRCC 3 cut(s) 307, 682, 1069
BsiEI CGRYCG 4 cut(s) 133, 301, 434, 438
BsiHKAI GWGCWC 1 cut(s) 737
BsiSI CCGG 7 cut(s) 37, 49, 311, 597, 607, 719, 986
BslI CCNNNNNNNGG 2 cut(s) 195, 636
BsmAI GTCTC 2 cut(s) 364, 692
BsmBI CGTCTC 1 cut(s) 692
BsnI GGCC 3 cut(s) 236, 264, 433
Bsp1286I GDGCHC 2 cut(s) 737, 780
Bsp143I GATC 5 cut(s) 93, 130, 268, 435, 957
Bsp19I CCATGG 1 cut(s) 69
BspANI GGCC 3 cut(s) 236, 264, 433
BspCNI CTCAG 2 cut(s) 289, 394
BspFNI CGCG 2 cut(s) 267, 905
BspLI GGNNCC 4 cut(s) 206, 309, 684, 1071
BspMI ACCTGC 2 cut(s) 439, 1012
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 3 cut(s) 307, 682, 1069
BsrDI GCAATG 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 718
BssAI RCCGGY 1 cut(s) 718
BssECI CCNNGG 4 cut(s) 69, 630, 821, 1147
BssMI GATC 5 cut(s) 93, 130, 268, 435, 957
BssNI GRCGYC 2 cut(s) 683, 701
BssT1I CCWWGG 3 cut(s) 69, 630, 1147
Bst2UI CCWGG 2 cut(s) 59, 785
Bst4CI ACNGT 2 cut(s) 772, 1098
BstACI GRCGYC 2 cut(s) 683, 701
BstC8I GCNNGC 4 cut(s) 399, 459, 857, 1035
BstDEI CTNAG 3 cut(s) 276, 402, 462
BstDSI CCRYGG 1 cut(s) 69
BstEII GGTNACC 1 cut(s) 77
BstF5I GGATG 3 cut(s) 45, 1059, 1128
BstFNI CGCG 2 cut(s) 267, 905
BstH2I RGCGCY 1 cut(s) 686
BstHHI GCGC 4 cut(s) 685, 841, 905, 1021
BstKTI GATC 5 cut(s) 96, 133, 271, 438, 960
BstMAI GTCTC 2 cut(s) 364, 692
BstMBI GATC 5 cut(s) 93, 130, 268, 435, 957
BstMCI CGRYCG 4 cut(s) 133, 301, 434, 438
BstMWI GCNNNNNNNGC 8 cut(s) 407, 416, 454, 467, 805, 814, 1025, 1034
BstNI CCWGG 2 cut(s) 59, 785
BstNSI RCATGY 1 cut(s) 125
BstPI GGTNACC 1 cut(s) 77
BstSCI CCNGG 4 cut(s) 57, 596, 606, 783
BstSLI GKGCMC 1 cut(s) 780
BstUI CGCG 2 cut(s) 267, 905
BstV1I GCAGC 5 cut(s) 215, 439, 631, 804, 1028
BstV2I GAAGAC 1 cut(s) 105
BstZI CGGCCG 1 cut(s) 431
BsuI GTATCC 1 cut(s) 192
BsuRI GGCC 3 cut(s) 236, 264, 433
BtgI CCRYGG 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 506
BtrI CACGTC 1 cut(s) 543
BtsCI GGATG 3 cut(s) 45, 1059, 1128
BveI ACCTGC 2 cut(s) 439, 1012
Cac8I GCNNGC 4 cut(s) 399, 459, 857, 1035
CfoI GCGC 4 cut(s) 685, 841, 905, 1021
Cfr10I RCCGGY 1 cut(s) 718
Cfr13I GGNCC 5 cut(s) 262, 586, 639, 712, 1144
CseI GACGC 1 cut(s) 814
CsiI ACCWGGT 1 cut(s) 57
Csp6I GTAC 2 cut(s) 308, 1161
CviAII CATG 6 cut(s) 70, 122, 195, 259, 676, 1171
CviQI GTAC 2 cut(s) 308, 1161
DdeI CTNAG 3 cut(s) 276, 402, 462
DinI GGCGCC 1 cut(s) 684
DpnI GATC 5 cut(s) 95, 132, 270, 437, 959
DpnII GATC 5 cut(s) 93, 130, 268, 435, 957
EaeI YGGCCR 1 cut(s) 431
EagI CGGCCG 1 cut(s) 431
EciI GGCGGA 2 cut(s) 1043, 1052
EclXI CGGCCG 1 cut(s) 431
Eco130I CCWWGG 3 cut(s) 69, 630, 1147
Eco47I GGWCC 4 cut(s) 586, 639, 712, 1144
Eco52I CGGCCG 1 cut(s) 431
Eco91I GGTNACC 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 77
EcoRII CCWGG 2 cut(s) 57, 783
EcoT14I CCWWGG 3 cut(s) 69, 630, 1147
EgeI GGCGCC 1 cut(s) 684
EheI GGCGCC 1 cut(s) 684
ErhI CCWWGG 3 cut(s) 69, 630, 1147
Esp3I CGTCTC 1 cut(s) 692
FaeI CATG 6 cut(s) 73, 125, 198, 262, 679, 1174
FatI CATG 6 cut(s) 69, 121, 194, 258, 675, 1170
FauI CCCGC 1 cut(s) 901
FblI GTMKAC 1 cut(s) 668
Fnu4HI GCNGC 9 cut(s) 229, 265, 428, 431, 594, 645, 818, 906, 1017
FokI GGATG 3 cut(s) 32, 1066, 1135
Fsp4HI GCNGC 9 cut(s) 229, 265, 428, 431, 594, 645, 818, 906, 1017
FspBI CTAG 2 cut(s) 212, 944
GlaI GCGC 4 cut(s) 684, 840, 904, 1020
GluI GCNGC 9 cut(s) 229, 265, 428, 431, 594, 645, 818, 906, 1017
GsuI CTGGAG 1 cut(s) 1025
HaeII RGCGCY 1 cut(s) 686
HaeIII GGCC 3 cut(s) 236, 264, 433
HapII CCGG 7 cut(s) 37, 49, 311, 597, 607, 719, 986
HgaI GACGC 1 cut(s) 814
HhaI GCGC 4 cut(s) 685, 841, 905, 1021
Hin1I GRCGYC 2 cut(s) 683, 701
Hin1II CATG 6 cut(s) 73, 125, 198, 262, 679, 1174
Hin6I GCGC 4 cut(s) 683, 839, 903, 1019
HinP1I GCGC 4 cut(s) 683, 839, 903, 1019
HincII GTYRAC 1 cut(s) 669
HindII GTYRAC 1 cut(s) 669
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 2 cut(s) 274, 374
HpaII CCGG 7 cut(s) 37, 49, 311, 597, 607, 719, 986
HphI GGTGA 3 cut(s) 58, 452, 496
Hpy166II GTNNAC 1 cut(s) 669
Hpy188I TCNGA 4 cut(s) 175, 273, 279, 383
Hpy188III TCNNGA 6 cut(s) 115, 158, 212, 296, 320, 391
Hpy8I GTNNAC 1 cut(s) 669
Hpy99I CGWCG 4 cut(s) 164, 254, 673, 706
HpyAV CCTTC 8 cut(s) 37, 68, 155, 218, 460, 506, 883, 1055
HpyCH4III ACNGT 2 cut(s) 772, 1098
HpyCH4IV ACGT 3 cut(s) 216, 542, 701
HpyCH4V TGCA 6 cut(s) 194, 351, 647, 859, 928, 1078
HpyF10VI GCNNNNNNNGC 8 cut(s) 407, 416, 454, 467, 805, 814, 1025, 1034
HpyF3I CTNAG 3 cut(s) 276, 402, 462
HpySE526I ACGT 3 cut(s) 216, 542, 701
Hsp92I GRCGYC 2 cut(s) 683, 701
Hsp92II CATG 6 cut(s) 73, 125, 198, 262, 679, 1174
HspAI GCGC 4 cut(s) 683, 839, 903, 1019
KasI GGCGCC 1 cut(s) 682
KpnI GGTACC 1 cut(s) 311
Kzo9I GATC 5 cut(s) 93, 130, 268, 435, 957
LmnI GCTCC 3 cut(s) 424, 1030, 1116
Lsp1109I GCAGC 5 cut(s) 215, 439, 631, 804, 1028
LweI GCATC 2 cut(s) 54, 915
MabI ACCWGGT 1 cut(s) 57
MaeI CTAG 2 cut(s) 212, 944
MaeII ACGT 3 cut(s) 216, 542, 701
MaeIII GTNAC 5 cut(s) 64, 77, 440, 484, 766
MalI GATC 5 cut(s) 95, 132, 270, 437, 959
MboI GATC 5 cut(s) 93, 130, 268, 435, 957
MboII GAAGA 5 cut(s) 110, 895, 898, 907, 943
MhlI GDGCHC 2 cut(s) 737, 780
Mly113I GGCGCC 1 cut(s) 683
MlyI GAGTC 2 cut(s) 268, 383
MmeI TCCRAC 2 cut(s) 296, 387
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 740
MspA1I CMGCKG 3 cut(s) 430, 644, 817
MspI CCGG 7 cut(s) 37, 49, 311, 597, 607, 719, 986
MspR9I CCNGG 4 cut(s) 59, 598, 608, 785
MvaI CCWGG 2 cut(s) 59, 785
MvnI CGCG 2 cut(s) 267, 905
MwoI GCNNNNNNNGC 8 cut(s) 407, 416, 454, 467, 805, 814, 1025, 1034
NarI GGCGCC 1 cut(s) 683
NciI CCSGG 2 cut(s) 598, 608
NcoI CCATGG 1 cut(s) 69
NdeII GATC 5 cut(s) 93, 130, 268, 435, 957
NlaIII CATG 6 cut(s) 73, 125, 198, 262, 679, 1174
NlaIV GGNNCC 4 cut(s) 206, 309, 684, 1071
NmeAIII GCCGAG 3 cut(s) 262, 711, 846
NmuCI GTSAC 4 cut(s) 64, 440, 484, 766
NspI RCATGY 1 cut(s) 125
PaqCI CACCTGC 1 cut(s) 1012
PciI ACATGT 1 cut(s) 121
PcsI WCGNNNNNNNCGW 2 cut(s) 494, 539
PdmI GAANNNNTTC 1 cut(s) 26
PflFI GACNNNGTC 1 cut(s) 544
PflMI CCANNNNNTGG 2 cut(s) 195, 636
PkrI GCNGC 9 cut(s) 230, 266, 429, 432, 595, 646, 819, 907, 1018
Ple19I CGATCG 2 cut(s) 133, 438
PleI GAGTC 2 cut(s) 268, 382
PluTI GGCGCC 1 cut(s) 686
PpsI GAGTC 2 cut(s) 268, 382
PscI ACATGT 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 57, 783
PspEI GGTNACC 1 cut(s) 77
PspGI CCWGG 2 cut(s) 57, 783
PspN4I GGNNCC 4 cut(s) 206, 309, 684, 1071
PspPI GGNCC 5 cut(s) 262, 586, 639, 712, 1144
PsyI GACNNNGTC 1 cut(s) 544
PvuI CGATCG 2 cut(s) 133, 438
RsaI GTAC 2 cut(s) 309, 1162
RsaNI GTAC 2 cut(s) 308, 1161
RseI CAYNNNNRTG 1 cut(s) 740
SalI GTCGAC 1 cut(s) 667
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 9 cut(s) 229, 265, 428, 431, 594, 645, 818, 906, 1017
Sau3AI GATC 5 cut(s) 93, 130, 268, 435, 957
Sau96I GGNCC 5 cut(s) 262, 586, 639, 712, 1144
SchI GAGTC 2 cut(s) 268, 383
ScrFI CCNGG 4 cut(s) 59, 598, 608, 785
SduI GDGCHC 2 cut(s) 737, 780
SexAI ACCWGGT 1 cut(s) 57
SfaNI GCATC 2 cut(s) 54, 915
SfoI GGCGCC 1 cut(s) 684
SinI GGWCC 4 cut(s) 586, 639, 712, 1144
SmiMI CAYNNNNRTG 1 cut(s) 740
SmlI CTYRAG 1 cut(s) 1133
SmoI CTYRAG 1 cut(s) 1133
SspDI GGCGCC 1 cut(s) 682
SspMI CTAG 2 cut(s) 212, 944
StyD4I CCNGG 4 cut(s) 57, 596, 606, 783
StyI CCWWGG 3 cut(s) 69, 630, 1147
TaaI ACNGT 2 cut(s) 772, 1098
TaiI ACGT 3 cut(s) 219, 545, 704
TaqI TCGA 6 cut(s) 96, 297, 578, 668, 704, 960
TaqII GACCGA 3 cut(s) 339, 367, 603
TauI GCSGC 4 cut(s) 267, 433, 596, 908
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 4 cut(s) 64, 440, 484, 766
TseI GCWGC 5 cut(s) 228, 427, 644, 817, 1016
Tsp45I GTSAC 4 cut(s) 64, 440, 484, 766
TspGWI ACGGA 2 cut(s) 217, 548
Tth111I GACNNNGTC 1 cut(s) 544
Van91I CCANNNNNTGG 2 cut(s) 195, 636
VpaK11BI GGWCC 4 cut(s) 586, 639, 712, 1144
XbaI TCTAGA 1 cut(s) 211
XceI RCATGY 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 668
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 2 cut(s) 212, 944
ZraI GACGTC 1 cut(s) 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.