Rmu_sc0006591.1_g000004

Protein BYPASS1-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006591.1
OG0015381
Physical Location & Seq
Forward (+)
16144 .. 17322
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006591.1_g000004.1.cds

Sequence Viewer

Length: 1179 bp
atgggtgcaactgataaccagaactccttcctcaaccggatcagtatccgacgaaaccaggtggtttccatggaaggtacccacgaccaggagctcgaagacctcgaacacttccagaaacacgtcgctgatcgcttcctcgaccttttatctcctcccgaagactccccctccgacccgtttctgtccattgcctggatacgcaagcttctcgacgtgtttctctgctgcgaggccgagttcaaggccgtcgtgctgatgggccgcgaccccacccagatcaccaagcctccgctcgaccggttggtcccggagtttcttgaccgagttgtgaaagctttggacatctgcaatgctgtgtccagcggggttgaatcggtcagacatttccagaagctggccgagattgcggtttcggctctggagcagcgcccgatcggcgacgggcaggtccggcgagccaagaaggctttgaattcactggtcacggccatggcaattgaggacaaagaagggcagactactaaggccacggagaggacgtggtcgtttgggcggaggaccggagtctcggccccgaataaggacagggccgccggtcatttccgggctttgtcttggggcatgtcgaaggggtggtcatcggcgaagcagattcaggctatgtcgatgaacctggtggctccgagagggaatgagacgtcgagtttggtgcagccggtgtatattatgagcacaattatgctgtttgtgatgtggatattggtgacggctgtgccgtgccaggagcggacggggctgatgacgcattttcaggtgccgaggaacttggtgtgggcgcagtcgttgattggtttgcaggacaagatagcggaggagtggaagaagaaggagaagaaatgcgcggcggggctgctggaggagctgcagaagatggagaaattggggcagtctctgatcgagtttgcggataattttcagttcccggcggaggcggagaggctggaggaggtggcggcgcaggtggcggagctggcggagatttgcaagaggatggaggaaggtttgctgcctctgcagcagcagattagggaactgttccacagggctgtgaggagcaggacggaggtgcttgaggttttggaccaaggtggtaaaggtactccacccatgatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

392

Amino Acids

44.07

Weight (kDa)

6.24

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63930
fragaria_vesca FvH4_5g03120
malus_domestica MD06G1090100.v1.1 MD14G1111100.v1.1
prunus_persica Prupe.5G105900_v2.0.a1
pyrus_communis pycom06g08590 pycom14g10600
rosa_chinensis RchiOBHm_Chr7g0196671
rosa_laevigata RLG00000003997
rosa_multiflora Rmu_sc0006591.1_g000004
rosa_rugosa Rorug07G0035800
rosa_samantha Rh7AG159600 Rh7BG161500 Rh7CG168000 Rh7DG160800
rosa_wichuraiana Rw7G013960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1012
AasI GACNNNNNNGTC 2 cut(s) 305, 449
AatII GACGTC 1 cut(s) 704
Acc36I ACCTGC 2 cut(s) 439, 1012
Acc65I GGTACC 1 cut(s) 77
AccB1I GGYRCC 2 cut(s) 77, 817
AccB7I CCANNNNNTGG 2 cut(s) 195, 397
AccBSI CCGCTC 2 cut(s) 295, 790
AccII CGCG 2 cut(s) 267, 905
AclWI GGATC 1 cut(s) 47
AcoI YGGCCR 2 cut(s) 399, 489
AcsI RAATTY 1 cut(s) 475
AcyI GRCGYC 1 cut(s) 701
AfaI GTAC 2 cut(s) 79, 1162
AfiI CCNNNNNNNGG 6 cut(s) 88, 195, 397, 537, 583, 991
AflIII ACRYGT 2 cut(s) 121, 216
AgeI ACCGGT 1 cut(s) 300
AgsI TTSAA 3 cut(s) 244, 374, 475
AjiI CACGTC 3 cut(s) 124, 217, 543
AjnI CCWGG 5 cut(s) 57, 87, 194, 675, 783
AluBI AGCT 6 cut(s) 94, 208, 338, 397, 925, 1033
AluI AGCT 6 cut(s) 94, 208, 338, 397, 925, 1033
Alw21I GWGCWC 2 cut(s) 96, 737
Alw26I GTCTC 3 cut(s) 574, 692, 957
AlwI GGATC 1 cut(s) 47
AlwNI CAGNNNCTG 2 cut(s) 397, 955
AoxI GGCC 8 cut(s) 234, 246, 262, 399, 489, 528, 573, 591
ApeKI GCWGC 8 cut(s) 228, 427, 715, 913, 925, 1069, 1078, 1081
ApoI RAATTY 1 cut(s) 475
ArsI GACNNNNNNTTYG 4 cut(s) 623, 655, 691, 723
AsiGI ACCGGT 1 cut(s) 300
Asp700I GAANNNNTTC 1 cut(s) 26
Asp718I GGTACC 1 cut(s) 77
AspLEI GCGC 4 cut(s) 432, 841, 905, 1021
AspS9I GGNCC 7 cut(s) 262, 307, 451, 561, 574, 591, 1144
AsuC2I CCSGG 3 cut(s) 311, 608, 986
AsuHPI GGTGA 2 cut(s) 274, 778
AvaII GGWCC 4 cut(s) 307, 451, 561, 1144
BanI GGYRCC 2 cut(s) 77, 817
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 2 cut(s) 105, 168
Bbv12I GWGCWC 2 cut(s) 96, 737
BbvI GCAGC 8 cut(s) 215, 439, 727, 900, 912, 1056, 1090, 1093
BccI CCATC 3 cut(s) 253, 928, 1048
BceAI ACGGC 4 cut(s) 233, 504, 763, 786
BcgI CGANNNNNNTGC 4 cut(s) 193, 227, 694, 728
BciT130I CCWGG 5 cut(s) 59, 89, 196, 677, 785
BciVI GTATCC 2 cut(s) 56, 192
BcnI CCSGG 3 cut(s) 311, 608, 986
BcoDI GTCTC 3 cut(s) 574, 692, 957
BfmI CTRYAG 2 cut(s) 926, 1076
BfoI RGCGCY 1 cut(s) 433
BfuAI ACCTGC 2 cut(s) 439, 1012
BfuI GTATCC 2 cut(s) 56, 192
BglI GCCNNNNNGGC 2 cut(s) 438, 467
Bme1390I CCNGG 8 cut(s) 59, 89, 196, 311, 608, 677, 785, 986
Bme18I GGWCC 4 cut(s) 307, 451, 561, 1144
BmgBI CACGTC 3 cut(s) 124, 217, 543
BmgT120I GGNCC 7 cut(s) 262, 307, 451, 561, 574, 591, 1144
BmiI GGNNCC 5 cut(s) 79, 309, 576, 684, 819
BmrFI CCNGG 8 cut(s) 59, 89, 196, 311, 608, 677, 785, 986
BoxI GACNNNNGTC 1 cut(s) 566
BpiI GAAGAC 2 cut(s) 105, 168
BpmI CTGGAG 3 cut(s) 443, 938, 1025
BpuEI CTTGAG 1 cut(s) 1154
BpuMI CCSGG 3 cut(s) 311, 608, 986
BsaBI GATNNNNATC 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 701
BsaJI CCNNGG 5 cut(s) 69, 492, 531, 821, 1147
BsaWI WCCGGW 3 cut(s) 36, 300, 563
BsaXI ACNNNNNCTCC 8 cut(s) 8, 38, 155, 185, 274, 304, 527, 557
Bsc4I CCNNNNNNNGG 6 cut(s) 88, 195, 397, 537, 583, 991
Bse118I RCCGGY 3 cut(s) 300, 596, 718
Bse1I ACTGG 1 cut(s) 486
Bse3DI GCAATG 2 cut(s) 189, 358
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 5 cut(s) 59, 89, 196, 677, 785
BseDI CCNNGG 5 cut(s) 69, 492, 531, 821, 1147
BseGI GGATG 1 cut(s) 1059
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 6 cut(s) 88, 195, 397, 537, 583, 991
BseMI GCAATG 2 cut(s) 189, 358
BseNI ACTGG 1 cut(s) 486
BseRI GAGGAG 5 cut(s) 144, 890, 935, 1022, 1129
BseXI GCAGC 8 cut(s) 215, 439, 727, 900, 912, 1056, 1090, 1093
BsgI GTGCAG 1 cut(s) 734
Bsh1236I CGCG 2 cut(s) 267, 905
Bsh1285I CGRYCG 2 cut(s) 301, 438
BshFI GGCC 8 cut(s) 236, 248, 264, 401, 491, 530, 575, 593
BshNI GGYRCC 2 cut(s) 77, 817
BshTI ACCGGT 1 cut(s) 300
BsiEI CGRYCG 2 cut(s) 301, 438
BsiHKAI GWGCWC 2 cut(s) 96, 737
BsiSI CCGG 9 cut(s) 37, 301, 311, 454, 564, 597, 607, 719, 986
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 6 cut(s) 88, 195, 397, 537, 583, 991
BsmAI GTCTC 3 cut(s) 574, 692, 957
BsmBI CGTCTC 1 cut(s) 692
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 8 cut(s) 236, 248, 264, 401, 491, 530, 575, 593
Bsp1286I GDGCHC 2 cut(s) 96, 737
Bsp143I GATC 5 cut(s) 39, 130, 279, 435, 957
Bsp19I CCATGG 2 cut(s) 69, 492
BspANI GGCC 8 cut(s) 236, 248, 264, 401, 491, 530, 575, 593
BspFNI CGCG 2 cut(s) 267, 905
BspLI GGNNCC 5 cut(s) 79, 309, 576, 684, 819
BspMAI CTGCAG 2 cut(s) 930, 1080
BspMI ACCTGC 2 cut(s) 439, 1012
BspPI GGATC 1 cut(s) 47
BspT107I GGYRCC 2 cut(s) 77, 817
BsrBI CCGCTC 2 cut(s) 295, 790
BsrDI GCAATG 2 cut(s) 189, 358
BsrFI RCCGGY 3 cut(s) 300, 596, 718
BsrI ACTGG 1 cut(s) 486
BssAI RCCGGY 3 cut(s) 300, 596, 718
BssECI CCNNGG 5 cut(s) 69, 492, 531, 821, 1147
BssMI GATC 5 cut(s) 39, 130, 279, 435, 957
BssNI GRCGYC 1 cut(s) 701
BssT1I CCWWGG 3 cut(s) 69, 492, 1147
Bst2UI CCWGG 5 cut(s) 59, 89, 196, 677, 785
Bst4CI ACNGT 1 cut(s) 1098
BstACI GRCGYC 1 cut(s) 701
BstC8I GCNNGC 4 cut(s) 206, 399, 459, 1035
BstDEI CTNAG 1 cut(s) 525
BstDSI CCRYGG 3 cut(s) 69, 492, 531
BstF5I GGATG 1 cut(s) 1059
BstFNI CGCG 2 cut(s) 267, 905
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 4 cut(s) 432, 841, 905, 1021
BstKTI GATC 5 cut(s) 42, 133, 282, 438, 960
BstMAI GTCTC 3 cut(s) 574, 692, 957
BstMBI GATC 5 cut(s) 39, 130, 279, 435, 957
BstMCI CGRYCG 2 cut(s) 301, 438
BstNI CCWGG 5 cut(s) 59, 89, 196, 677, 785
BstNSI RCATGY 1 cut(s) 628
BstPAI GACNNNNGTC 1 cut(s) 566
BstSCI CCNGG 8 cut(s) 57, 87, 194, 309, 606, 675, 783, 984
BstSFI CTRYAG 2 cut(s) 926, 1076
BstUI CGCG 2 cut(s) 267, 905
BstV1I GCAGC 8 cut(s) 215, 439, 727, 900, 912, 1056, 1090, 1093
BstV2I GAAGAC 2 cut(s) 105, 168
BsuI GTATCC 2 cut(s) 56, 192
BsuRI GGCC 8 cut(s) 236, 248, 264, 401, 491, 530, 575, 593
BtgI CCRYGG 3 cut(s) 69, 492, 531
BtrI CACGTC 3 cut(s) 124, 217, 543
BtsCI GGATG 1 cut(s) 1059
BtsIMutI CAGTG 1 cut(s) 479
BveI ACCTGC 2 cut(s) 439, 1012
Cac8I GCNNGC 4 cut(s) 206, 399, 459, 1035
CaiI CAGNNNCTG 2 cut(s) 397, 955
CfoI GCGC 4 cut(s) 432, 841, 905, 1021
Cfr10I RCCGGY 3 cut(s) 300, 596, 718
Cfr13I GGNCC 7 cut(s) 262, 307, 451, 561, 574, 591, 1144
CseI GACGC 1 cut(s) 814
CsiI ACCWGGT 2 cut(s) 57, 675
Csp6I GTAC 2 cut(s) 78, 1161
CspAI ACCGGT 1 cut(s) 300
CviAII CATG 4 cut(s) 70, 493, 625, 1171
CviQI GTAC 2 cut(s) 78, 1161
DdeI CTNAG 1 cut(s) 525
DpnI GATC 5 cut(s) 41, 132, 281, 437, 959
DpnII GATC 5 cut(s) 39, 130, 279, 435, 957
DrdI GACNNNNNNGTC 2 cut(s) 305, 449
DseDI GACNNNNNNGTC 2 cut(s) 305, 449
EaeI YGGCCR 2 cut(s) 399, 489
EciI GGCGGA 5 cut(s) 571, 1004, 1010, 1043, 1052
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 3 cut(s) 69, 492, 1147
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 4 cut(s) 307, 451, 561, 1144
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 475
EcoRII CCWGG 5 cut(s) 57, 87, 194, 675, 783
EcoT14I CCWWGG 3 cut(s) 69, 492, 1147
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 3 cut(s) 69, 492, 1147
Esp3I CGTCTC 1 cut(s) 692
FaeI CATG 4 cut(s) 73, 496, 628, 1174
FaiI YATR 8 cut(s) 71, 494, 626, 665, 726, 731, 743, 1172
FaqI GGGAC 1 cut(s) 293
FatI CATG 4 cut(s) 69, 492, 624, 1170
FauI CCCGC 2 cut(s) 359, 901
FokI GGATG 1 cut(s) 1066
FriOI GRGCYC 1 cut(s) 96
GlaI GCGC 4 cut(s) 431, 840, 904, 1020
GsuI CTGGAG 3 cut(s) 443, 938, 1025
HaeII RGCGCY 1 cut(s) 433
HaeIII GGCC 8 cut(s) 236, 248, 264, 401, 491, 530, 575, 593
HapII CCGG 9 cut(s) 37, 301, 311, 454, 564, 597, 607, 719, 986
HgaI GACGC 1 cut(s) 814
HhaI GCGC 4 cut(s) 432, 841, 905, 1021
Hin1I GRCGYC 1 cut(s) 701
Hin1II CATG 4 cut(s) 73, 496, 628, 1174
Hin6I GCGC 4 cut(s) 430, 839, 903, 1019
HinP1I GCGC 4 cut(s) 430, 839, 903, 1019
HindIII AAGCTT 2 cut(s) 206, 336
HinfI GANTC 4 cut(s) 164, 374, 567, 655
HpaII CCGG 9 cut(s) 37, 301, 311, 454, 564, 597, 607, 719, 986
HphI GGTGA 2 cut(s) 274, 778
Hpy188I TCNGA 5 cut(s) 50, 175, 383, 687, 957
Hpy188III TCNNGA 6 cut(s) 115, 158, 212, 320, 391, 422
Hpy99I CGWCG 6 cut(s) 54, 128, 218, 254, 446, 706
HpyAV CCTTC 7 cut(s) 37, 68, 460, 506, 625, 883, 1055
HpyCH4III ACNGT 1 cut(s) 1098
HpyCH4IV ACGT 4 cut(s) 123, 216, 542, 701
HpyCH4V TGCA 7 cut(s) 8, 351, 715, 859, 928, 1047, 1078
HpyF3I CTNAG 1 cut(s) 525
HpySE526I ACGT 4 cut(s) 123, 216, 542, 701
Hsp92I GRCGYC 1 cut(s) 701
Hsp92II CATG 4 cut(s) 73, 496, 628, 1174
HspAI GCGC 4 cut(s) 430, 839, 903, 1019
KpnI GGTACC 1 cut(s) 81
Kzo9I GATC 5 cut(s) 39, 130, 279, 435, 957
LmnI GCTCC 7 cut(s) 91, 424, 688, 787, 922, 1030, 1116
Lsp1109I GCAGC 8 cut(s) 215, 439, 727, 900, 912, 1056, 1090, 1093
MabI ACCWGGT 2 cut(s) 57, 675
MaeII ACGT 4 cut(s) 123, 216, 542, 701
MaeIII GTNAC 2 cut(s) 484, 766
MalI GATC 5 cut(s) 41, 132, 281, 437, 959
MbiI CCGCTC 2 cut(s) 295, 790
MboI GATC 5 cut(s) 39, 130, 279, 435, 957
MboII GAAGA 6 cut(s) 110, 173, 895, 898, 907, 943
MfeI CAATTG 1 cut(s) 498
MhlI GDGCHC 2 cut(s) 96, 737
MluCI AATT 5 cut(s) 475, 498, 738, 941, 973
MlyI GAGTC 2 cut(s) 158, 576
MmeI TCCRAC 2 cut(s) 73, 198
MroXI GAANNNNTTC 1 cut(s) 26
MslI CAYNNNNRTG 2 cut(s) 491, 740
MspA1I CMGCKG 1 cut(s) 366
MspI CCGG 9 cut(s) 37, 301, 311, 454, 564, 597, 607, 719, 986
MspR9I CCNGG 8 cut(s) 59, 89, 196, 311, 608, 677, 785, 986
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 5 cut(s) 59, 89, 196, 677, 785
MvnI CGCG 2 cut(s) 267, 905
NciI CCSGG 3 cut(s) 311, 608, 986
NcoI CCATGG 2 cut(s) 69, 492
NdeII GATC 5 cut(s) 39, 130, 279, 435, 957
NlaIII CATG 4 cut(s) 73, 496, 628, 1174
NlaIV GGNNCC 5 cut(s) 79, 309, 576, 684, 819
NmeAIII GCCGAG 4 cut(s) 262, 427, 551, 846
NmuCI GTSAC 2 cut(s) 484, 766
NspI RCATGY 1 cut(s) 628
PaqCI CACCTGC 1 cut(s) 1012
PcsI WCGNNNNNNNCGW 3 cut(s) 102, 539, 776
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 374, 655
PflFI GACNNNGTC 1 cut(s) 544
PflMI CCANNNNNTGG 2 cut(s) 195, 397
PfoI TCCNGGA 1 cut(s) 309
PinAI ACCGGT 1 cut(s) 300
Ple19I CGATCG 1 cut(s) 438
PleI GAGTC 2 cut(s) 158, 575
PpsI GAGTC 2 cut(s) 158, 575
PshAI GACNNNNGTC 1 cut(s) 566
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 5 cut(s) 57, 87, 194, 675, 783
PspGI CCWGG 5 cut(s) 57, 87, 194, 675, 783
PspN4I GGNNCC 5 cut(s) 79, 309, 576, 684, 819
PspPI GGNCC 7 cut(s) 262, 307, 451, 561, 574, 591, 1144
PstI CTGCAG 2 cut(s) 930, 1080
PstNI CAGNNNCTG 2 cut(s) 397, 955
PsyI GACNNNGTC 1 cut(s) 544
PvuI CGATCG 1 cut(s) 438
RsaI GTAC 2 cut(s) 79, 1162
RsaNI GTAC 2 cut(s) 78, 1161
RseI CAYNNNNRTG 2 cut(s) 491, 740
SacI GAGCTC 1 cut(s) 96
Sau3AI GATC 5 cut(s) 39, 130, 279, 435, 957
Sau96I GGNCC 7 cut(s) 262, 307, 451, 561, 574, 591, 1144
SchI GAGTC 2 cut(s) 158, 576
ScrFI CCNGG 8 cut(s) 59, 89, 196, 311, 608, 677, 785, 986
SduI GDGCHC 2 cut(s) 96, 737
SexAI ACCWGGT 2 cut(s) 57, 675
SfcI CTRYAG 2 cut(s) 926, 1076
SinI GGWCC 4 cut(s) 307, 451, 561, 1144
SmiMI CAYNNNNRTG 2 cut(s) 491, 740
SmlI CTYRAG 1 cut(s) 1133
SmoI CTYRAG 1 cut(s) 1133
Sse9I AATT 5 cut(s) 475, 498, 738, 941, 973
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 8 cut(s) 57, 87, 194, 309, 606, 675, 783, 984
StyI CCWWGG 3 cut(s) 69, 492, 1147
TaaI ACNGT 1 cut(s) 1098
TaiI ACGT 4 cut(s) 126, 219, 545, 704
TaqI TCGA 9 cut(s) 96, 105, 141, 213, 297, 629, 668, 704, 960
TaqII GACCGA 2 cut(s) 339, 367
TasI AATT 5 cut(s) 475, 498, 738, 941, 973
TauI GCSGC 4 cut(s) 267, 596, 908, 1019
TfiI GAWTC 2 cut(s) 374, 655
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 2 cut(s) 484, 766
TseI GCWGC 8 cut(s) 228, 427, 715, 913, 925, 1069, 1078, 1081
Tsp45I GTSAC 2 cut(s) 484, 766
TspDTI ATGAA 1 cut(s) 686
TspGWI ACGGA 2 cut(s) 548, 1139
TspRI CASTG 1 cut(s) 486
Tth111I GACNNNGTC 1 cut(s) 544
Van91I CCANNNNNTGG 2 cut(s) 195, 397
VpaK11BI GGWCC 4 cut(s) 307, 451, 561, 1144
XapI RAATTY 1 cut(s) 475
XceI RCATGY 1 cut(s) 628
XmnI GAANNNNTTC 1 cut(s) 26
ZraI GACGTC 1 cut(s) 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.