Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0018292

Physical Location & Seq

Genomic Coordinates Reverse (-)

24686114 .. 24687417

Gene Structure 1304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G66240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCTTAAAGACTTGTTCCAAGCCGTATCCTATCAAAACACTGCAAGTCTCTCTCTCTTTCAAGCCTTGTCGGTGGTTGAATCGAAAGCTATGTCTCAGACCGTTGTTCTCAGAGTGGCCATGACATGTGAGGGATGTGTTGGAGCTGTGAAAAGAGTTCTTGGGAAAATGGAAGGCGTGGAGTCATTTGACGTTGATATAAAGGAGCAGAAAGTGACGGTGAAAGGCAACGTGCAGCCAGACGCAGTTTTACAGACCGTGACGAAAACCGGAAAGAAAACGGCTTTTTGGGAAGCTGAAGGTGAAACTGCTAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006878 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0016530 GO:0016531 GO:0019725 GO:0019904 GO:0030001 GO:0030003 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0046916 GO:0048046 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko04978 map04978

Pfam Domains

Protein Families

HMA

Protein Analysis

106

Amino Acids

11.43

Weight (kDa)

7.72

Isoelectric Point (pI)

20.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	1 - 53	2e-15	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66240 AT1G66240
rosa_chinensis	RchiOBHm_Chr1g0332931
rosa_multiflora	Rmu_sc0000117.1_g000012 Rmu_sc0003179.1_g000008
rosa_rugosa	Rorug01G0102200
rosa_samantha	Rh1AG129100 Rh1BG098300 Rh1CG123100
rosa_wichuraiana	Rw1G010380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	318
AflIII	ACRYGT	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	62, 80
AluBI	AGCT	3 cut(s)	89, 146, 296
AluI	AGCT	3 cut(s)	89, 146, 296
Alw26I	GTCTC	2 cut(s)	53, 99
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	235
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AsuHPI	GGTGA	2 cut(s)	232, 314
BalI	TGGCCA	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	247
BceAI	ACGGC	2 cut(s)	8, 297
BciVI	GTATCC	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	53, 99
BfuI	GTATCC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	269
BseGI	GGATG	1 cut(s)	140
BseMII	CTCAG	2 cut(s)	110, 124
BseXI	GCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	270
BsmAI	GTCTC	2 cut(s)	53, 99
BsnI	GGCC	1 cut(s)	119
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	2 cut(s)	109, 123
Bst4CI	ACNGT	3 cut(s)	103, 220, 259
BstDEI	CTNAG	3 cut(s)	96, 110, 312
BstF5I	GGATG	1 cut(s)	140
BstMAI	GTCTC	2 cut(s)	53, 99
BstNSI	RCATGY	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	140
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
CseI	GACGC	1 cut(s)	251
CviAII	CATG	2 cut(s)	121, 126
CviJI	RGCY	9 cut(s)	23, 65, 89, 119, 146, 238, 284, 296, 317
CviKI_1	RGCY	9 cut(s)	23, 65, 89, 119, 146, 238, 284, 296, 317
DdeI	CTNAG	3 cut(s)	96, 110, 312
EaeI	YGGCCR	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	318
FaeI	CATG	2 cut(s)	124, 129
FaiI	YATR	4 cut(s)	92, 122, 127, 200
FatI	CATG	2 cut(s)	120, 125
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	1 cut(s)	270
HgaI	GACGC	1 cut(s)	251
Hin1II	CATG	2 cut(s)	124, 129
HinfI	GANTC	2 cut(s)	80, 182
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	2 cut(s)	232, 314
Hpy188I	TCNGA	2 cut(s)	99, 113
HpyAV	CCTTC	2 cut(s)	167, 293
HpyCH4III	ACNGT	3 cut(s)	103, 220, 259
HpyCH4IV	ACGT	2 cut(s)	192, 231
HpyCH4V	TGCA	2 cut(s)	44, 235
HpyF3I	CTNAG	3 cut(s)	96, 110, 312
HpySE526I	ACGT	2 cut(s)	192, 231
Hsp92II	CATG	2 cut(s)	124, 129
LmnI	GCTCC	2 cut(s)	143, 205
LpnPI	CCDG	2 cut(s)	252, 283
Lsp1109I	GCAGC	1 cut(s)	247
MaeII	ACGT	2 cut(s)	192, 231
MaeIII	GTNAC	2 cut(s)	214, 259
MlsI	TGGCCA	1 cut(s)	119
MluNI	TGGCCA	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	1 cut(s)	124
Mox20I	TGGCCA	1 cut(s)	119
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	2 cut(s)	6, 319
Msp20I	TGGCCA	1 cut(s)	119
MspI	CCGG	1 cut(s)	270
NlaIII	CATG	2 cut(s)	124, 129
NmuCI	GTSAC	2 cut(s)	214, 259
NspI	RCATGY	1 cut(s)	129
PciI	ACATGT	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PscI	ACATGT	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	6, 319
SatI	GCNGC	1 cut(s)	236
SchI	GAGTC	1 cut(s)	191
SetI	ASST	6 cut(s)	91, 148, 195, 234, 298, 304
TaaI	ACNGT	3 cut(s)	103, 220, 259
TaiI	ACGT	2 cut(s)	195, 234
TaqI	TCGA	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	2 cut(s)	6, 319
Tru9I	TTAA	2 cut(s)	6, 319
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	2 cut(s)	214, 259
TseI	GCWGC	1 cut(s)	235
Tsp45I	GTSAC	2 cut(s)	214, 259
TspRI	CASTG	1 cut(s)	46
XceI	RCATGY	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.