RchiOBHm_Chr1g0332931

Copper transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0018292
Physical Location & Seq
Forward (+)
24753823 .. 24756185
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56180

Sequence Viewer

Length: 264 bp
ATGGCATCTCAGACTACAGTCCTCAAGGTTGGTATGTCATGCCAAGGCTGTGTTGGAGCTGTGAAAAGGGTTCTTGGCAAACTGGAAGGTGTGGAATCATATGACATTGATTTTGATGCACAAAAGGTGACAGTGAAAGGCAATGTGCCACCCGAGACAGTTCTGCAAACTGTTACCAAAACTGGCAAGAAGACTGCCTACTGGGAGGCAGAAGCACCAGCAGAACCCGAAGCAAAGCCTGCAGAAGCTGTGGCTGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04978 map04978
Pfam Domains
Protein Families
HMA

Protein Analysis

87

Amino Acids

9.1

Weight (kDa)

5.36

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 8 - 64 3.7e-19 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66240 AT1G66240
rosa_chinensis RchiOBHm_Chr1g0332931
rosa_multiflora Rmu_sc0000117.1_g000012 Rmu_sc0003179.1_g000008
rosa_rugosa Rorug01G0102200
rosa_samantha Rh1AG129100 Rh1BG098300 Rh1CG123100
rosa_wichuraiana Rw1G010380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 2 cut(s) 59, 248
AluI AGCT 2 cut(s) 59, 248
Alw26I GTCTC 1 cut(s) 149
AlwNI CAGNNNCTG 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 254, 257
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AsuHPI GGTGA 1 cut(s) 139
AvaI CYCGRG 1 cut(s) 152
BarI GAAGNNNNNNTAC 2 cut(s) 182, 214
BbsI GAAGAC 1 cut(s) 197
BbvI GCAGC 2 cut(s) 241, 244
BcoDI GTCTC 1 cut(s) 149
BfmI CTRYAG 2 cut(s) 15, 240
BisI GCNGC 2 cut(s) 255, 258
BlsI GCNGC 2 cut(s) 256, 259
BmeT110I CYCGRG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 211
BmsI GCATC 2 cut(s) 14, 106
BmuI ACTGGG 1 cut(s) 211
BoxI GACNNNNGTC 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 43
Bse1I ACTGG 3 cut(s) 87, 187, 206
Bse3DI GCAATG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 3 cut(s) 87, 187, 206
BseXI GCAGC 2 cut(s) 241, 244
BsiHKCI CYCGRG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 22
BspMAI CTGCAG 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 3 cut(s) 87, 187, 206
BssECI CCNNGG 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 43
Bst4CI ACNGT 4 cut(s) 19, 133, 160, 172
BstAPI GCANNNNNTGC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 149
BstMWI GCNNNNNNNGC 2 cut(s) 239, 254
BstPAI GACNNNNGTC 1 cut(s) 17
BstSFI CTRYAG 2 cut(s) 15, 240
BstV1I GCAGC 2 cut(s) 241, 244
BstV2I GAAGAC 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 240
CaiI CAGNNNCTG 1 cut(s) 248
CviAII CATG 1 cut(s) 39
CviJI RGCY 5 cut(s) 48, 59, 238, 248, 254
CviKI_1 RGCY 5 cut(s) 48, 59, 238, 248, 254
DdeI CTNAG 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 1 cut(s) 42
FaiI YATR 5 cut(s) 35, 40, 100, 102, 262
FatI CATG 1 cut(s) 38
FauNDI CATATG 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 255, 258
Fsp4HI GCNGC 2 cut(s) 255, 258
GluI GCNGC 2 cut(s) 255, 258
Hin1II CATG 1 cut(s) 42
HinfI GANTC 1 cut(s) 95
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 4 cut(s) 19, 133, 160, 172
HpyCH4V TGCA 4 cut(s) 119, 166, 242, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 254
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 1 cut(s) 42
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 5 cut(s) 68, 168, 187, 231, 252
Lsp1109I GCAGC 2 cut(s) 241, 244
LweI GCATC 2 cut(s) 14, 106
MaeIII GTNAC 2 cut(s) 127, 172
MboII GAAGA 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 2 cut(s) 32, 199
MwoI GCNNNNNNNGC 2 cut(s) 239, 254
NdeI CATATG 1 cut(s) 100
NlaIII CATG 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 256, 259
PshAI GACNNNNGTC 1 cut(s) 17
PstI CTGCAG 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 248
SatI GCNGC 2 cut(s) 255, 258
SetI ASST 5 cut(s) 30, 61, 91, 129, 250
SfaNI GCATC 2 cut(s) 14, 106
SfcI CTRYAG 2 cut(s) 15, 240
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 4 cut(s) 19, 133, 160, 172
TfiI GAWTC 1 cut(s) 95
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 2 cut(s) 254, 257
Tsp45I GTSAC 1 cut(s) 127
TspRI CASTG 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.