Rorug01G0102200

Copper transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018292
Physical Location & Seq
Forward (+)
16956836 .. 16959044
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0102200.1

Sequence Viewer

Length: 1098 bp
ATGCAATCAAAGATCAGTGCCTTCTTCAAACCCTCTTCTTCTTCTTCTTCTGTTTCACCCAAACCAGCAGACCCACCTCCCATTTTCGACGACGACGACCAGGAATTGAGCATATGGGAAAAGAAGCAACACCAACAATTCTCCACCTACAAGCGAAGAGCTCCAAACCCACCAAGGGGTGGGAGTGAGTGTAGTTGGGATAACCAGTTGGCAAAGACACCCATTTCGGATGTCGACTCTCCCAAGCCTGAATCGACAGTATTGGGAAAGACAGTGACCAAGAACAAGAAGAGAAGCTATGCTCAGTACCATTTAGACTTGGGTCAGTCTGACTTTCTTCTGCACACGTGTTCAGCGTGCGGCGTCATGTATGTGACTGGAGATGAAGAGGATGAGAAGGCTCACAAGGGATTTCACAATGACTATACCCGCGGAATACAATTCAAGGGTTGGTGCAATGAGAGGGTTGTTCATTCGCTTAAAGTTGGAGGAGGTCGGATTCTTTTGGTGTTGGATGGTGATCCTCCTGCTCAGAGGAACAAGGTTGAGAAAGTTGTGACAATGATGGAGACTGAGCTTGGGAGTGGGTGGATTCTGCCCAAGTTGTTTAAGGTGTATCTGTTTGTTTTGTACGCAAGAATTGTAGGCTGTCTGATTGCCGAACCTATAACAAAAGCACACAAAGTCCTATCTTGTGCAGTTGATGGAAGTTCAAGTTCTGCTAGTACGAAAACAAATAAAACAAAGTTAACTACGCTCCAGTTTGGGGAAATCAAATTTCACAGGGAAGTCATTAGAAAAGCCCCTTCTGTTCCTGAACCATTGAATGAGTGTTTCACTGGTGCTATCATTTGTGAAAAGGAAGCAGTACCCGCTGTCTGTGGCATTAGAGCCATTTGGGTCACTCCAGCTAACAGAAGAAAACACATAGCCACCCACTTATTGGATGCCCTGAGGAAAAGTTTCTGCATGGGATTTGTCCTTGAGCACTCTCAGTTGGCATTCTCTCCACTAACATCGGCTGGAAACGCATTGGTATCAAATTATATTGGCAATGGACATTTCTTGGTGTACAACACAAACAATGTCGTCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04978 map04978
Pfam Domains
Protein Families
HMA

Protein Analysis

365

Amino Acids

40.34

Weight (kDa)

8.96

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_3 PF13878 102 - 140 1.2e-14 zinc-finger of acetyl-transferase ESCO
Acetyltransf_13 PF13880 290 - 358 1.9e-25 ESCO1/2 acetyl-transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66240 AT1G66240
rosa_chinensis RchiOBHm_Chr1g0332931
rosa_multiflora Rmu_sc0000117.1_g000012 Rmu_sc0003179.1_g000008
rosa_rugosa Rorug01G0102200
rosa_samantha Rh1AG129100 Rh1BG098300 Rh1CG123100
rosa_wichuraiana Rw1G010380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 179, 943
AccI GTMKAC 1 cut(s) 234
AccII CGCG 1 cut(s) 432
AciI CCGC 4 cut(s) 360, 430, 432, 873
AclWI GGATC 1 cut(s) 515
AcsI RAATTY 1 cut(s) 776
AcvI CACGTG 1 cut(s) 348
AcyI GRCGYC 1 cut(s) 363
AfaI GTAC 5 cut(s) 308, 632, 727, 870, 1073
AfiI CCNNNNNNNGG 5 cut(s) 175, 176, 179, 766, 943
AflIII ACRYGT 2 cut(s) 345, 347
AgsI TTSAA 4 cut(s) 28, 445, 714, 826
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 4 cut(s) 161, 297, 577, 911
AluI AGCT 4 cut(s) 161, 297, 577, 911
Alw21I GWGCWC 2 cut(s) 163, 990
Alw26I GTCTC 1 cut(s) 563
AlwI GGATC 1 cut(s) 515
ApoI RAATTY 1 cut(s) 776
ArsI GACNNNNNNTTYG 2 cut(s) 208, 240
Asp700I GAANNNNTTC 1 cut(s) 962
AsuHPI GGTGA 2 cut(s) 48, 530
AxyI CCTNAGG 1 cut(s) 953
BanII GRGCYC 1 cut(s) 163
BbrPI CACGTG 1 cut(s) 348
Bbv12I GWGCWC 2 cut(s) 163, 990
BccI CCATC 3 cut(s) 509, 559, 698
BciT130I CCWGG 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 563
BfaI CTAG 1 cut(s) 723
BisI GCNGC 1 cut(s) 361
BlsI GCNGC 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 937
BoxI GACNNNNGTC 1 cut(s) 321
BpmI CTGGAG 3 cut(s) 399, 743, 891
BpuEI CTTGAG 1 cut(s) 1004
BsaAI YACGTR 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 519
BsaHI GRCGYC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 173, 430
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 5 cut(s) 175, 176, 179, 766, 943
Bse1I ACTGG 4 cut(s) 205, 382, 760, 844
Bse21I CCTNAGG 1 cut(s) 953
Bse3DI GCAATG 2 cut(s) 463, 1060
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 173, 430
BseGI GGATG 4 cut(s) 235, 397, 520, 952
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 5 cut(s) 175, 176, 179, 766, 943
BseMI GCAATG 2 cut(s) 463, 1060
BseMII CTCAG 5 cut(s) 317, 545, 564, 944, 1007
BseNI ACTGG 4 cut(s) 205, 382, 760, 844
BseRI GAGGAG 1 cut(s) 504
BsgI GTGCAG 2 cut(s) 326, 717
Bsh1236I CGCG 1 cut(s) 432
BsiHKAI GWGCWC 2 cut(s) 163, 990
BslI CCNNNNNNNGG 5 cut(s) 175, 176, 179, 766, 943
BsmAI GTCTC 1 cut(s) 563
BsmI GAATGC 1 cut(s) 1001
Bsp1286I GDGCHC 2 cut(s) 163, 990
Bsp1407I TGTACA 1 cut(s) 1071
Bsp143I GATC 2 cut(s) 12, 520
BspACI CCGC 4 cut(s) 360, 430, 432, 873
BspCNI CTCAG 5 cut(s) 316, 544, 565, 945, 1006
BspFNI CGCG 1 cut(s) 432
BspPI GGATC 1 cut(s) 515
BspQI GCTCTTC 1 cut(s) 151
BsrDI GCAATG 2 cut(s) 463, 1060
BsrGI TGTACA 1 cut(s) 1071
BsrI ACTGG 4 cut(s) 205, 382, 760, 844
BssECI CCNNGG 2 cut(s) 173, 430
BssMI GATC 2 cut(s) 12, 520
BssNI GRCGYC 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 2 cut(s) 259, 274
Bst6I CTCTTC 4 cut(s) 40, 151, 284, 381
BstACI GRCGYC 1 cut(s) 363
BstAUI TGTACA 1 cut(s) 1071
BstBAI YACGTR 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 5 cut(s) 303, 531, 573, 953, 993
BstDSI CCRYGG 1 cut(s) 430
BstF5I GGATG 4 cut(s) 235, 397, 520, 952
BstFNI CGCG 1 cut(s) 432
BstKTI GATC 2 cut(s) 15, 523
BstMAI GTCTC 1 cut(s) 563
BstMBI GATC 2 cut(s) 12, 520
BstMWI GCNNNNNNNGC 2 cut(s) 872, 1028
BstNI CCWGG 1 cut(s) 101
BstPAI GACNNNNGTC 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 99
BstUI CGCG 1 cut(s) 432
Bsu36I CCTNAGG 1 cut(s) 953
BtgI CCRYGG 1 cut(s) 430
BtsCI GGATG 4 cut(s) 235, 397, 520, 952
BtsIMutI CAGTG 3 cut(s) 22, 279, 837
Cac8I GCNNGC 1 cut(s) 358
Cfr42I CCGCGG 1 cut(s) 433
CseI GACGC 1 cut(s) 352
Csp6I GTAC 5 cut(s) 307, 631, 726, 869, 1072
CviAII CATG 2 cut(s) 367, 970
CviQI GTAC 5 cut(s) 307, 631, 726, 869, 1072
DdeI CTNAG 5 cut(s) 303, 531, 573, 953, 993
DpnI GATC 2 cut(s) 14, 522
DpnII GATC 2 cut(s) 12, 520
Eam1104I CTCTTC 4 cut(s) 40, 151, 284, 381
EarI CTCTTC 4 cut(s) 40, 151, 284, 381
Ecl136II GAGCTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 161
Eco72I CACGTG 1 cut(s) 348
Eco81I CCTNAGG 1 cut(s) 953
EcoICRI GAGCTC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 2 cut(s) 370, 973
FatI CATG 2 cut(s) 366, 969
FauI CCCGC 2 cut(s) 437, 880
FauNDI CATATG 1 cut(s) 113
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 361
FokI GGATG 4 cut(s) 242, 404, 527, 959
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 361
FspBI CTAG 1 cut(s) 723
GluI GCNGC 1 cut(s) 361
GsuI CTGGAG 3 cut(s) 399, 743, 891
HgaI GACGC 1 cut(s) 352
Hin1I GRCGYC 1 cut(s) 363
Hin1II CATG 2 cut(s) 370, 973
HincII GTYRAC 2 cut(s) 235, 750
HindII GTYRAC 2 cut(s) 235, 750
HinfI GANTC 4 cut(s) 236, 251, 499, 592
HpaI GTTAAC 1 cut(s) 750
HphI GGTGA 2 cut(s) 48, 530
Hpy166II GTNNAC 3 cut(s) 235, 750, 1072
Hpy188I TCNGA 5 cut(s) 229, 331, 498, 534, 654
Hpy188III TCNNGA 1 cut(s) 815
Hpy8I GTNNAC 3 cut(s) 235, 750, 1072
Hpy99I CGWCG 3 cut(s) 92, 95, 98
HpyAV CCTTC 3 cut(s) 31, 391, 816
HpyCH4III ACNGT 2 cut(s) 259, 274
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 5 cut(s) 4, 343, 456, 698, 969
HpyF10VI GCNNNNNNNGC 2 cut(s) 872, 1028
HpyF3I CTNAG 5 cut(s) 303, 531, 573, 953, 993
HpySE526I ACGT 1 cut(s) 347
Hsp92I GRCGYC 1 cut(s) 363
Hsp92II CATG 2 cut(s) 370, 973
KspAI GTTAAC 1 cut(s) 750
KspI CCGCGG 1 cut(s) 433
Kzo9I GATC 2 cut(s) 12, 520
LguI GCTCTTC 1 cut(s) 151
LmnI GCTCC 2 cut(s) 166, 762
LweI GCATC 1 cut(s) 937
MaeI CTAG 1 cut(s) 723
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 4 cut(s) 274, 373, 556, 901
MalI GATC 2 cut(s) 14, 522
MboI GATC 2 cut(s) 12, 520
MhlI GDGCHC 2 cut(s) 163, 990
MluCI AATT 6 cut(s) 104, 137, 440, 639, 776, 1042
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 3 cut(s) 466, 476, 492
MnlI CCTC 9 cut(s) 43, 87, 382, 456, 482, 485, 528, 534, 948
MroXI GAANNNNTTC 1 cut(s) 962
MseI TTAA 3 cut(s) 480, 609, 749
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 2 cut(s) 432, 875
MspR9I CCNGG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 1001
MvaI CCWGG 1 cut(s) 101
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 2 cut(s) 872, 1028
NdeI CATATG 1 cut(s) 113
NdeII GATC 2 cut(s) 12, 520
NlaIII CATG 2 cut(s) 370, 973
NmuCI GTSAC 4 cut(s) 274, 373, 556, 901
PciSI GCTCTTC 1 cut(s) 151
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 353
PctI GAATGC 1 cut(s) 1001
PdmI GAANNNNTTC 1 cut(s) 962
PfeI GAWTC 3 cut(s) 251, 499, 592
PflMI CCANNNNNTGG 2 cut(s) 179, 943
PkrI GCNGC 1 cut(s) 362
PleI GAGTC 1 cut(s) 230
PmaCI CACGTG 1 cut(s) 348
PmlI CACGTG 1 cut(s) 348
PpsI GAGTC 1 cut(s) 230
Ppu21I YACGTR 1 cut(s) 348
PshAI GACNNNNGTC 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 99
PspCI CACGTG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 99
RsaI GTAC 5 cut(s) 308, 632, 727, 870, 1073
RsaNI GTAC 5 cut(s) 307, 631, 726, 869, 1072
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 1 cut(s) 163
SacII CCGCGG 1 cut(s) 433
SalI GTCGAC 1 cut(s) 233
SapI GCTCTTC 1 cut(s) 151
SaqAI TTAA 3 cut(s) 480, 609, 749
SatI GCNGC 1 cut(s) 361
Sau3AI GATC 2 cut(s) 12, 520
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 2 cut(s) 163, 990
SfaNI GCATC 1 cut(s) 937
Sfr303I CCGCGG 1 cut(s) 433
SgrBI CCGCGG 1 cut(s) 433
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 983
SmoI CTYRAG 1 cut(s) 983
Sse9I AATT 6 cut(s) 104, 137, 440, 639, 776, 1042
SsiI CCGC 4 cut(s) 360, 430, 432, 873
SspMI CTAG 1 cut(s) 723
SstI GAGCTC 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 2 cut(s) 259, 274
TaiI ACGT 1 cut(s) 350
TaqI TCGA 3 cut(s) 87, 234, 254
TasI AATT 6 cut(s) 104, 137, 440, 639, 776, 1042
TatI WGTACW 1 cut(s) 1071
TauI GCSGC 1 cut(s) 363
TfiI GAWTC 3 cut(s) 251, 499, 592
Tru1I TTAA 3 cut(s) 480, 609, 749
Tru9I TTAA 3 cut(s) 480, 609, 749
TscAI CASTG 3 cut(s) 22, 279, 844
TseFI GTSAC 4 cut(s) 274, 373, 556, 901
Tsp45I GTSAC 4 cut(s) 274, 373, 556, 901
TspDTI ATGAA 2 cut(s) 399, 461
TspRI CASTG 3 cut(s) 22, 279, 844
Van91I CCANNNNNTGG 2 cut(s) 179, 943
XapI RAATTY 1 cut(s) 776
XcmI CCANNNNNNNNNTGG 1 cut(s) 940
XmiI GTMKAC 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 962
XspI CTAG 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.