AT1G69420

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010267
Physical Location & Seq
Forward (+)
26093026 .. 26097167
4142 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G69420.2

Sequence Viewer

Length: 1791 bp
ATGAGGAAACATGGATGGCAGCTTCCATACCATCCTCTTCAGGTGGTGGCTGTTGCTGTGTTCTTGGCTTTAGGGTTTGCTTTCTATGTCTTCTTTGCTCCATTTGTTGGGAAGAAGATTCATCAGTACATTGCGATGGGCATTTACACTCCTCTGATTACGTGTGTGGTTGGACTGTATATATGGTGTGCGGCTTCAGATCCTGCAGACCGTGGAGTTTTCCGGTCTAAGAAGTACCTTAAAATTCCTGAAAATGGGAAATTTCCTCTAGCAAAGGATATAAAAGATGGATGTGGATCAGCTACAGGTGGTGCTAAATCTCATGATGGCACGTGTGTAGAGGATACAGAAAATGGAAGTAACAAGAAATTGGAGTCATCAGAAAGATCTTCTCTCCTGCGTTTGCTCTGCTCTCCTTGTGCATTGCTATGTAGTTGTTGCAGTGGAAAAGATGAATCTTCTGAGCAGATGAGTGAGGATGGGATGTTTTATTGCAGTCTGTGTGAAGTTGAGGTCTTCAAATACAGCAAGCATTGCAGAGTTTGTGACAAATGTGTGGACCGTTTTGATCATCACTGCAGGTGGCTAAACAACTGCATTGGCAAGCGGAATTACCGAAAATTCTTCAGTCTTATGGTATCAGCTATTTTTTTGCTCATTATGCAATGGTCAACTGGGATTTTTGTGCTGGTATTATGTTTACTCCGAAGAAACCAATTTAATGCAGACATTGCCCTGAAGTTGGGAAGCAGCTTCTCGCTAATTCCATTTGTTATAGTTGTTGGTGTCTGTACAGTATTAGCAATGCTGGCAACGTTACCACTTGCTCAGCTTTTCTTCTTCCACATTCTTCTCATTAAGAAGGGAATCAGTACATACGACTACATAGTTGCGCTTAGGGAGCAAGAGCAAGAACTAGAAGCTGGAGGCGGTCAACAGAGTCCTCAAATGTCAATGATCAGCTCATTTACTGGACTAAGCAGTGCAAGCTCCTTCAATACATTTCATCGTGGGGCATGGTGCACACCACCACGTTTGTTTCTTGAGGATCAGTTTGACGTAGTCCCTCCAGAGAATGCTTCTGTAAGTTCATATGGGAAGAAGTCTGTTGTAGAGGAACGTGTCAAGAAGAAGCCCCAACCTGTGAAGATTAGTCCTTGGACTCTAGCTCGTCTCAATGCAGAAGAAGTTTCAAAAGCAGCAGCAGAAGCAAGAAAGAAATCCAAAATAATCCAGCCTGTGGCGAGACGGGAAAATCCATTTGTTGGCTTAGAAGCAAGCAGCAGCTTCGGAAGCAGTGGCCGTAGAATGTTCCCAACAAAATATGAAGGTGTTAATAATAACGGGAAGCAGCGAAGGCAATCAAAGCGCATACGGTTACCAGCAGAACTACCTCTAGAACCGCTGATGAATGTTCAGACAAAAGCAGCAATGGAGACATCAACTAGTTCAGGGCTAGCTCCACTTCAGCTAGAAGCAAGAAGCGCGTTTCAGACAAGCCGGGCAATGTCAGGGTCTGGTAATGTTATGGTGACATCTTCACCAGAGAGCAGCTTAGACTCGCATGACATTCACCCGTTTAGAGTTTCGTCTGAAGCAGAGGATGCAGCGCAGCTTAATGGGTTCTCTTCTGCTGTTGGTCTGATGGGTCAACAGAGAGGACAACAACAACAACAACAACTATCAATGATGATGATGCCATTGTCAAGGTCTACAAGTGATGGCTATGATGCATCTGGTGGAGAAGACAGTGATCAGGTTCCTTCTAGAAACATCCACAAATCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko05205 map00531 map01100 map05205
Pfam Domains
Protein Families
DHHC

Protein Analysis

596

Amino Acids

65.89

Weight (kDa)

9.0

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 163 - 296 7e-29 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 570
Acc36I ACCTGC 1 cut(s) 570
AccB7I CCANNNNNTGG 3 cut(s) 107, 1240, 1265
AccI GTMKAC 1 cut(s) 1712
AccII CGCG 1 cut(s) 1487
AciI CCGC 4 cut(s) 191, 607, 930, 1403
AclI AACGTT 1 cut(s) 815
AclWI GGATC 3 cut(s) 194, 304, 1056
AcoI YGGCCR 1 cut(s) 1300
AcsI RAATTY 3 cut(s) 243, 260, 620
AcuI CTGAAG 6 cut(s) 23, 180, 610, 758, 1451, 1614
AcvI CACGTG 1 cut(s) 333
AfaI GTAC 4 cut(s) 128, 236, 793, 874
AfiI CCNNNNNNNGG 5 cut(s) 107, 254, 742, 1240, 1265
AflIII ACRYGT 3 cut(s) 161, 332, 1120
AgsI TTSAA 3 cut(s) 520, 997, 1194
AhlI ACTAGT 1 cut(s) 1445
Alw21I GWGCWC 1 cut(s) 1025
Alw26I GTCTC 3 cut(s) 1178, 1240, 1430
Alw44I GTGCAC 1 cut(s) 1021
AlwI GGATC 3 cut(s) 194, 304, 1056
AlwNI CAGNNNCTG 2 cut(s) 203, 1517
AoxI GGCC 1 cut(s) 1300
ApaLI GTGCAC 1 cut(s) 1021
ApoI RAATTY 3 cut(s) 243, 260, 620
AspLEI GCGC 4 cut(s) 895, 1371, 1487, 1612
AspS9I GGNCC 1 cut(s) 559
AsuC2I CCSGG 1 cut(s) 1502
AsuHPI GGTGA 3 cut(s) 1533, 1543, 1565
AsuNHI GCTAGC 1 cut(s) 1456
AvaII GGWCC 1 cut(s) 559
BaeGI GKGCMC 1 cut(s) 1025
BbrPI CACGTG 1 cut(s) 333
BbsI GAAGAC 3 cut(s) 82, 508, 1752
Bbv12I GWGCWC 1 cut(s) 1025
BccI CCATC 8 cut(s) 9, 39, 130, 281, 320, 473, 1639, 1715
BceAI ACGGC 1 cut(s) 1287
BcgI CGANNNNNNTGC 2 cut(s) 1270, 1304
BciVI GTATCC 1 cut(s) 337
BclI TGATCA 3 cut(s) 568, 957, 1753
BcnI CCSGG 1 cut(s) 1502
BcoDI GTCTC 3 cut(s) 1178, 1240, 1430
BcuI ACTAGT 1 cut(s) 1445
BfaI CTAG 8 cut(s) 269, 917, 1166, 1397, 1446, 1457, 1472, 1767
BfmI CTRYAG 3 cut(s) 204, 303, 577
BfuAI ACCTGC 1 cut(s) 570
BfuI GTATCC 1 cut(s) 337
BglII AGATCT 1 cut(s) 386
BlpI GCTNAGC 1 cut(s) 828
Bme1390I CCNGG 1 cut(s) 1502
Bme18I GGWCC 1 cut(s) 559
BmgT120I GGNCC 1 cut(s) 559
BmiI GGNNCC 1 cut(s) 1761
BmrFI CCNGG 1 cut(s) 1502
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 4 cut(s) 1594, 1686, 1720, 1742
BmtI GCTAGC 1 cut(s) 1460
BmuI ACTGGG 1 cut(s) 684
BpiI GAAGAC 3 cut(s) 82, 508, 1752
BpmI CTGGAG 2 cut(s) 945, 1053
Bpu10I CCTNAGC 1 cut(s) 896
Bpu1102I GCTNAGC 1 cut(s) 828
BpuEI CTTGAG 1 cut(s) 1064
BpuMI CCSGG 1 cut(s) 1502
BsaAI YACGTR 2 cut(s) 162, 333
BsaBI GATNNNNATC 1 cut(s) 295
BsaJI CCNNGG 2 cut(s) 211, 1157
BsaWI WCCGGW 1 cut(s) 222
Bsc4I CCNNNNNNNGG 5 cut(s) 107, 254, 742, 1240, 1265
Bse1I ACTGG 2 cut(s) 679, 976
Bse3DI GCAATG 8 cut(s) 129, 422, 532, 671, 729, 810, 1437, 1512
Bse8I GATNNNNATC 1 cut(s) 295
BseDI CCNNGG 2 cut(s) 211, 1157
BseGI GGATG 7 cut(s) 20, 31, 296, 484, 489, 1609, 1773
BseJI GATNNNNATC 1 cut(s) 295
BseLI CCNNNNNNNGG 5 cut(s) 107, 254, 742, 1240, 1265
BseMI GCAATG 8 cut(s) 129, 422, 532, 671, 729, 810, 1437, 1512
BseMII CTCAG 2 cut(s) 453, 842
BseNI ACTGG 2 cut(s) 679, 976
BseRI GAGGAG 1 cut(s) 141
BseSI GKGCMC 1 cut(s) 1025
Bsh1236I CGCG 1 cut(s) 1487
BshFI GGCC 1 cut(s) 1302
BsiHKAI GWGCWC 1 cut(s) 1025
BsiSI CCGG 2 cut(s) 223, 1501
BslFI GGGAC 1 cut(s) 1049
BslI CCNNNNNNNGG 5 cut(s) 107, 254, 742, 1240, 1265
BsmAI GTCTC 3 cut(s) 1178, 1240, 1430
BsmBI CGTCTC 2 cut(s) 1178, 1240
BsmFI GGGAC 1 cut(s) 1049
BsmI GAATGC 1 cut(s) 1081
BsnI GGCC 1 cut(s) 1302
Bsp1286I GDGCHC 1 cut(s) 1025
Bsp1407I TGTACA 1 cut(s) 791
Bsp143I GATC 7 cut(s) 199, 296, 386, 568, 957, 1048, 1753
Bsp1720I GCTNAGC 1 cut(s) 828
BspACI CCGC 4 cut(s) 191, 607, 930, 1403
BspANI GGCC 1 cut(s) 1302
BspCNI CTCAG 2 cut(s) 454, 841
BspFNI CGCG 1 cut(s) 1487
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 1761
BspMAI CTGCAG 2 cut(s) 208, 581
BspMI ACCTGC 1 cut(s) 570
BspOI GCTAGC 1 cut(s) 1460
BspPI GGATC 3 cut(s) 194, 304, 1056
BsrDI GCAATG 8 cut(s) 129, 422, 532, 671, 729, 810, 1437, 1512
BsrGI TGTACA 1 cut(s) 791
BsrI ACTGG 2 cut(s) 679, 976
BssECI CCNNGG 2 cut(s) 211, 1157
BssMI GATC 7 cut(s) 199, 296, 386, 568, 957, 1048, 1753
BssT1I CCWWGG 1 cut(s) 1157
Bst4CI ACNGT 6 cut(s) 177, 212, 563, 796, 1377, 1751
Bst6I CTCTTC 2 cut(s) 42, 1633
BstAPI GCANNNNNTGC 3 cut(s) 534, 731, 1604
BstAUI TGTACA 1 cut(s) 791
BstBAI YACGTR 2 cut(s) 162, 333
BstC8I GCNNGC 6 cut(s) 530, 605, 810, 988, 1279, 1458
BstDEI CTNAG 7 cut(s) 228, 462, 828, 896, 977, 1270, 1555
BstDSI CCRYGG 1 cut(s) 211
BstEII GGTNACC 1 cut(s) 1377
BstF5I GGATG 7 cut(s) 20, 31, 296, 484, 489, 1609, 1773
BstFNI CGCG 1 cut(s) 1487
BstHHI GCGC 4 cut(s) 895, 1371, 1487, 1612
BstKTI GATC 7 cut(s) 202, 299, 389, 571, 960, 1051, 1756
BstMAI GTCTC 3 cut(s) 1178, 1240, 1430
BstMBI GATC 7 cut(s) 199, 296, 386, 568, 957, 1048, 1753
BstPI GGTNACC 1 cut(s) 1377
BstSCI CCNGG 1 cut(s) 1500
BstSFI CTRYAG 3 cut(s) 204, 303, 577
BstSLI GKGCMC 1 cut(s) 1025
BstUI CGCG 1 cut(s) 1487
BstV2I GAAGAC 3 cut(s) 82, 508, 1752
BstX2I RGATCY 2 cut(s) 199, 386
BstYI RGATCY 2 cut(s) 199, 386
BsuI GTATCC 1 cut(s) 337
BsuRI GGCC 1 cut(s) 1302
BtgI CCRYGG 1 cut(s) 211
BtgZI GCGATG 1 cut(s) 149
BtsCI GGATG 7 cut(s) 20, 31, 296, 484, 489, 1609, 1773
BtsI GCAGTG 4 cut(s) 448, 574, 988, 1303
BtsIMutI CAGTG 5 cut(s) 448, 574, 988, 1303, 1756
BveI ACCTGC 1 cut(s) 570
Cac8I GCNNGC 6 cut(s) 530, 605, 810, 988, 1279, 1458
CaiI CAGNNNCTG 2 cut(s) 203, 1517
CciI TCATGA 1 cut(s) 322
CfoI GCGC 4 cut(s) 895, 1371, 1487, 1612
Cfr13I GGNCC 1 cut(s) 559
Csp6I GTAC 4 cut(s) 127, 235, 792, 873
CspCI CAANNNNNGTGG 2 cut(s) 1017, 1052
CviAII CATG 4 cut(s) 11, 323, 1017, 1565
CviQI GTAC 4 cut(s) 127, 235, 792, 873
DdeI CTNAG 7 cut(s) 228, 462, 828, 896, 977, 1270, 1555
DpnI GATC 7 cut(s) 201, 298, 388, 570, 959, 1050, 1755
DpnII GATC 7 cut(s) 199, 296, 386, 568, 957, 1048, 1753
EaeI YGGCCR 1 cut(s) 1300
Eam1104I CTCTTC 2 cut(s) 42, 1633
EarI CTCTTC 2 cut(s) 42, 1633
Eco130I CCWWGG 1 cut(s) 1157
Eco47I GGWCC 1 cut(s) 559
Eco57I CTGAAG 6 cut(s) 23, 180, 610, 758, 1451, 1614
Eco72I CACGTG 1 cut(s) 333
Eco91I GGTNACC 1 cut(s) 1377
EcoO65I GGTNACC 1 cut(s) 1377
EcoT14I CCWWGG 1 cut(s) 1157
EcoT22I ATGCAT 1 cut(s) 1735
ErhI CCWWGG 1 cut(s) 1157
Esp3I CGTCTC 2 cut(s) 1178, 1240
FaeI CATG 4 cut(s) 14, 326, 1020, 1568
FaqI GGGAC 1 cut(s) 1049
FatI CATG 4 cut(s) 10, 322, 1016, 1564
FauNDI CATATG 1 cut(s) 1093
FbaI TGATCA 3 cut(s) 568, 957, 1753
FblI GTMKAC 1 cut(s) 1712
FokI GGATG 7 cut(s) 18, 27, 303, 491, 496, 1616, 1760
FspBI CTAG 8 cut(s) 269, 917, 1166, 1397, 1446, 1457, 1472, 1767
GlaI GCGC 4 cut(s) 894, 1370, 1486, 1611
GsuI CTGGAG 2 cut(s) 945, 1053
HaeIII GGCC 1 cut(s) 1302
HapII CCGG 2 cut(s) 223, 1501
HhaI GCGC 4 cut(s) 895, 1371, 1487, 1612
Hin1II CATG 4 cut(s) 14, 326, 1020, 1568
Hin6I GCGC 4 cut(s) 893, 1369, 1485, 1610
HinP1I GCGC 4 cut(s) 893, 1369, 1485, 1610
HincII GTYRAC 3 cut(s) 672, 935, 1652
HindII GTYRAC 3 cut(s) 672, 935, 1652
HinfI GANTC 7 cut(s) 118, 374, 455, 867, 940, 1162, 1559
HpaII CCGG 2 cut(s) 223, 1501
HphI GGTGA 3 cut(s) 1533, 1543, 1565
Hpy166II GTNNAC 7 cut(s) 559, 672, 701, 935, 1023, 1652, 1713
Hpy188III TCNNGA 8 cut(s) 248, 323, 1043, 1070, 1126, 1397, 1767, 1785
Hpy8I GTNNAC 7 cut(s) 559, 672, 701, 935, 1023, 1652, 1713
HpyAV CCTTC 5 cut(s) 856, 1003, 1322, 1350, 1773
HpyCH4III ACNGT 6 cut(s) 177, 212, 563, 796, 1377, 1751
HpyCH4IV ACGT 6 cut(s) 161, 332, 815, 1033, 1059, 1120
HpyF3I CTNAG 7 cut(s) 228, 462, 828, 896, 977, 1270, 1555
HpySE526I ACGT 6 cut(s) 161, 332, 815, 1033, 1059, 1120
Hsp92II CATG 4 cut(s) 14, 326, 1020, 1568
HspAI GCGC 4 cut(s) 893, 1369, 1485, 1610
Ksp22I TGATCA 3 cut(s) 568, 957, 1753
Kzo9I GATC 7 cut(s) 199, 296, 386, 568, 957, 1048, 1753
LmnI GCTCC 4 cut(s) 103, 901, 995, 1465
LweI GCATC 4 cut(s) 1594, 1686, 1720, 1742
MaeI CTAG 8 cut(s) 269, 917, 1166, 1397, 1446, 1457, 1472, 1767
MaeII ACGT 6 cut(s) 161, 332, 815, 1033, 1059, 1120
MaeIII GTNAC 5 cut(s) 359, 545, 816, 1377, 1531
MalI GATC 7 cut(s) 201, 298, 388, 570, 959, 1050, 1755
MboI GATC 7 cut(s) 199, 296, 386, 568, 957, 1048, 1753
MflI RGATCY 2 cut(s) 199, 386
MhlI GDGCHC 1 cut(s) 1025
MluCI AATT 7 cut(s) 243, 260, 368, 610, 620, 716, 762
MlyI GAGTC 4 cut(s) 383, 949, 1156, 1553
MmeI TCCRAC 1 cut(s) 151
Mph1103I ATGCAT 1 cut(s) 1735
MseI TTAA 5 cut(s) 240, 720, 858, 1335, 1617
MslI CAYNNNNRTG 2 cut(s) 134, 427
MspA1I CMGCKG 1 cut(s) 1405
MspI CCGG 2 cut(s) 223, 1501
MspR9I CCNGG 1 cut(s) 1502
Mva1269I GAATGC 1 cut(s) 1081
MvnI CGCG 1 cut(s) 1487
NciI CCSGG 1 cut(s) 1502
NdeI CATATG 1 cut(s) 1093
NdeII GATC 7 cut(s) 199, 296, 386, 568, 957, 1048, 1753
NheI GCTAGC 1 cut(s) 1456
NlaIII CATG 4 cut(s) 14, 326, 1020, 1568
NlaIV GGNNCC 1 cut(s) 1761
NmuCI GTSAC 2 cut(s) 545, 1531
NsiI ATGCAT 1 cut(s) 1735
PagI TCATGA 1 cut(s) 322
PaqCI CACCTGC 1 cut(s) 570
PctI GAATGC 1 cut(s) 1081
PfeI GAWTC 3 cut(s) 118, 455, 867
PflFI GACNNNGTC 1 cut(s) 1061
PflMI CCANNNNNTGG 3 cut(s) 107, 1240, 1265
PleI GAGTC 4 cut(s) 382, 948, 1156, 1553
PmaCI CACGTG 1 cut(s) 333
PmlI CACGTG 1 cut(s) 333
PpsI GAGTC 4 cut(s) 382, 948, 1156, 1553
Ppu21I YACGTR 2 cut(s) 162, 333
Psp1406I AACGTT 1 cut(s) 815
PspCI CACGTG 1 cut(s) 333
PspEI GGTNACC 1 cut(s) 1377
PspN4I GGNNCC 1 cut(s) 1761
PspPI GGNCC 1 cut(s) 559
PstI CTGCAG 2 cut(s) 208, 581
PstNI CAGNNNCTG 2 cut(s) 203, 1517
PsuI RGATCY 2 cut(s) 199, 386
PsyI GACNNNGTC 1 cut(s) 1061
RsaI GTAC 4 cut(s) 128, 236, 793, 874
RsaNI GTAC 4 cut(s) 127, 235, 792, 873
RseI CAYNNNNRTG 2 cut(s) 134, 427
SaqAI TTAA 5 cut(s) 240, 720, 858, 1335, 1617
Sau3AI GATC 7 cut(s) 199, 296, 386, 568, 957, 1048, 1753
Sau96I GGNCC 1 cut(s) 559
SchI GAGTC 4 cut(s) 383, 949, 1156, 1553
ScrFI CCNGG 1 cut(s) 1502
SduI GDGCHC 1 cut(s) 1025
SfaNI GCATC 4 cut(s) 1594, 1686, 1720, 1742
SfcI CTRYAG 3 cut(s) 204, 303, 577
SinI GGWCC 1 cut(s) 559
SmiMI CAYNNNNRTG 2 cut(s) 134, 427
SmlI CTYRAG 1 cut(s) 1043
SmoI CTYRAG 1 cut(s) 1043
SpeI ACTAGT 1 cut(s) 1445
Sse9I AATT 7 cut(s) 243, 260, 368, 610, 620, 716, 762
SsiI CCGC 4 cut(s) 191, 607, 930, 1403
SspMI CTAG 8 cut(s) 269, 917, 1166, 1397, 1446, 1457, 1472, 1767
StyD4I CCNGG 1 cut(s) 1500
StyI CCWWGG 1 cut(s) 1157
TaaI ACNGT 6 cut(s) 177, 212, 563, 796, 1377, 1751
TaiI ACGT 6 cut(s) 164, 335, 818, 1036, 1062, 1123
TasI AATT 7 cut(s) 243, 260, 368, 610, 620, 716, 762
TatI WGTACW 3 cut(s) 126, 791, 872
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 3 cut(s) 118, 455, 867
Tru1I TTAA 5 cut(s) 240, 720, 858, 1335, 1617
Tru9I TTAA 5 cut(s) 240, 720, 858, 1335, 1617
TscAI CASTG 5 cut(s) 448, 581, 988, 1303, 1756
TseFI GTSAC 2 cut(s) 545, 1531
Tsp45I GTSAC 2 cut(s) 545, 1531
TspDTI ATGAA 6 cut(s) 110, 468, 995, 1080, 1341, 1424
TspRI CASTG 5 cut(s) 448, 581, 988, 1303, 1756
Tth111I GACNNNGTC 1 cut(s) 1061
Van91I CCANNNNNTGG 3 cut(s) 107, 1240, 1265
VneI GTGCAC 1 cut(s) 1021
VpaK11BI GGWCC 1 cut(s) 559
XapI RAATTY 3 cut(s) 243, 260, 620
XbaI TCTAGA 2 cut(s) 1396, 1766
XmiI GTMKAC 1 cut(s) 1712
XspI CTAG 8 cut(s) 269, 917, 1166, 1397, 1446, 1457, 1472, 1767
Zsp2I ATGCAT 1 cut(s) 1735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.