Rh4AG366100

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0010267
Physical Location & Seq
Forward (+)
67379816 .. 67385388
5573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG366100.1

Sequence Viewer

Length: 1575 bp
ATGCATGAAGCTAATGATGTGACAGTTGGAGGAAGACCTCTGGACAAGGATGCACTTGGCAAACTTGGTACTTCAAAAGCGTCCAACAGTGATATTGAAGTGAAGGGTGCTTCCTCAGAAAATTCGTCTTGCTTAATGTTGCTTTTCTCACCATGTGCTTATATCTGCGATTGCTCCGGATCAAGTGAAGAATCTTCATTGCACCAAATGAGTGAAGAAGGCATGTTCTATTGCAGTTTGTGTGAAGTTGAGGTTTTCAAGTACAGCAAGCACTGCAGAGTTTGTGACAAATGTGTTGACCGTTTTGATCATCACTGCAGGTGGCTCAACAACTGTATTGGAAAAAAGAATTATCGACAATTTTTCACCCTTATGGTTACTTCTCTCCTCTTGCTAATCTTACAATGGTCAACTGGAATCTTTGTGCTTATCTGCTGTATTATTGAGAGGAAGCACATCTCTGTGGATATATCTACAAAGTTAGGAAGCAGTTTTTCTTTGGTGCCTTTCGTCATTGTCGTGGCAGTGTGCACCCTTTTGGCTATGATTGCAACCCTGCCACTTGCTCAACTTTTCTTTTTTCACATCCTCCTTATAAAGAAGGGAATCAGCACATATGATTACATCATTGCTTTAAGGGAGCAGGAGCAAGAGCAACAAGGAGTTGGGGGTCAGCACAGTCCCCAAATGTCTCCTGCAAGCTCACTTACTGGATTAAGCAGTGCAAGCTCCTTTACTACCTTTCACCGAAATGCATGGTGTACACCTCCGCGACTGTTCCTTGAAGATCAGTTTGATGTTGTACCCCCTGAGACTGGATCTGTTAGCTCATACGGGAAAAAAATGGTGGGAGAGGAACCAACTAAGAAGAAGAATACTGGAACGGTAAAGATCAGTCCGTGGACTCTGGCAAGATTAAATGCAGAAGAGGTATCAAAAGCTGCTGCAGAGGCCAGAAAGAAGTCTAAGATCCTGCAGCCTGTGAGACGTGATACTCCTTTTCGACTGGAAAGAGACAATAGCTTTGGCAGCAGTGGCCGCCGGATGGTTCCAAAGCCTGACAATAACAGAAGACGAACTACCAAGCGGGTGCGCCTCCCAGCTGACCTTCCTGTGGAGGCTTTAACAAAGGGCACAGCTAAAGCTGTTGATAAAGGTTTTACTGAGACATCGACTAGTTTGGCCCCTCTTCAGCTTGAAGCTCGGAGTGCTTTCCAAACAAGCCGAGCTATGTCAAGCTCCATAGGGATAGCAGCTTCTTCTCCTGAGAGCAGTTTAGACTCACCTGATATCCATCCCTTCCGGGTATCCTCATCAGGAGCAGAAGAGGCAAGGCGGCTAACAGGTCTGCCTGCCGCTATTGCAGCTGCTCAGAAGGGAATCCCACTGTCAAGGTCAACTAGTGATGGTGGATATGACGCATCTGGTGGAGAAGATAGTGACAGGGTTCCTCCCAGAAATGTTGAAAGGTCAACAGCAAACTGGAGTAGCCTTCTCTTGGGCTCTGAACAGGATGAAAGGGTTGTCAAACAGAAAGCAGCATCTTCTAGCCTGGCTAACAGTAGAAAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko05205 map00531 map01100 map05205
Pfam Domains
Protein Families
DHHC

Protein Analysis

524

Amino Acids

57.22

Weight (kDa)

8.86

Isoelectric Point (pI)

60.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 77 - 209 1e-28 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 596
AarI CACCTGC 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 502
AccII CGCG 1 cut(s) 772
AccIII TCCGGA 1 cut(s) 176
AciI CCGC 5 cut(s) 770, 1039, 1087, 1336, 1356
AclWI GGATC 3 cut(s) 187, 826, 964
AcoI YGGCCR 1 cut(s) 1036
AcsI RAATTY 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 1175
AdeI CACNNNGTG 1 cut(s) 155
AfaI GTAC 4 cut(s) 70, 263, 763, 804
AfiI CCNNNNNNNGG 4 cut(s) 815, 1045, 1114, 1498
AgsI TTSAA 6 cut(s) 75, 98, 259, 785, 1199, 1466
AhlI ACTAGT 2 cut(s) 1175, 1400
AjiI CACGTC 1 cut(s) 989
AjnI CCWGG 1 cut(s) 1551
Alw21I GWGCWC 1 cut(s) 533
Alw26I GTCTC 5 cut(s) 696, 806, 979, 1008, 1160
Alw44I GTGCAC 1 cut(s) 529
AlwI GGATC 3 cut(s) 187, 826, 964
Aor13HI TCCGGA 1 cut(s) 176
AoxI GGCC 3 cut(s) 951, 1036, 1182
ApaLI GTGCAC 1 cut(s) 529
ApeKI GCWGC 8 cut(s) 941, 944, 976, 1029, 1253, 1364, 1367, 1538
ApoI RAATTY 1 cut(s) 121
ArsI GACNNNNNNTTYG 2 cut(s) 1007, 1039
AspLEI GCGC 1 cut(s) 1095
AspS9I GGNCC 1 cut(s) 1183
AsuC2I CCSGG 1 cut(s) 1304
AsuHPI GGTGA 4 cut(s) 141, 358, 737, 1275
BaeGI GKGCMC 2 cut(s) 533, 1136
BanI GGYRCC 1 cut(s) 502
BanII GRGCYC 1 cut(s) 1505
BarI GAAGNNNNNNTAC 2 cut(s) 1063, 1095
BbsI GAAGAC 2 cut(s) 40, 1078
Bbv12I GWGCWC 1 cut(s) 533
BbvI GCAGC 8 cut(s) 928, 931, 988, 1041, 1265, 1354, 1376, 1550
BccI CCATC 3 cut(s) 1039, 1302, 1400
BciT130I CCWGG 1 cut(s) 1553
BciVI GTATCC 1 cut(s) 1318
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 1 cut(s) 1304
BcoDI GTCTC 5 cut(s) 696, 806, 979, 1008, 1160
BcuI ACTAGT 2 cut(s) 1175, 1400
BfaI CTAG 3 cut(s) 1176, 1401, 1548
BfmI CTRYAG 4 cut(s) 274, 316, 945, 974
BfuAI ACCTGC 1 cut(s) 309
BfuI GTATCC 1 cut(s) 1318
Bme1390I CCNGG 2 cut(s) 1304, 1553
BmgBI CACGTC 1 cut(s) 989
BmgT120I GGNCC 1 cut(s) 1183
BmiI GGNNCC 5 cut(s) 504, 858, 1050, 1185, 1449
BmrFI CCNGG 2 cut(s) 1304, 1553
BmsI GCATC 3 cut(s) 40, 1430, 1550
BpiI GAAGAC 2 cut(s) 40, 1078
BpmI CTGGAG 1 cut(s) 1504
BpuMI CCSGG 1 cut(s) 1304
BsaBI GATNNNNATC 1 cut(s) 1293
BsaJI CCNNGG 1 cut(s) 899
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 4 cut(s) 815, 1045, 1114, 1498
Bse1I ACTGG 6 cut(s) 418, 715, 820, 883, 1011, 1487
Bse3DI GCAATG 2 cut(s) 197, 627
Bse8I GATNNNNATC 1 cut(s) 1293
BseAI TCCGGA 1 cut(s) 176
BseBI CCWGG 1 cut(s) 1553
BseDI CCNNGG 1 cut(s) 899
BseGI GGATG 5 cut(s) 55, 585, 1050, 1294, 1519
BseJI GATNNNNATC 1 cut(s) 1293
BseLI CCNNNNNNNGG 4 cut(s) 815, 1045, 1114, 1498
BseMI GCAATG 2 cut(s) 197, 627
BseMII CTCAG 5 cut(s) 129, 801, 1155, 1257, 1385
BseNI ACTGG 6 cut(s) 418, 715, 820, 883, 1011, 1487
BseRI GAGGAG 1 cut(s) 377
BseSI GKGCMC 2 cut(s) 533, 1136
BseXI GCAGC 8 cut(s) 928, 931, 988, 1041, 1265, 1354, 1376, 1550
BseYI CCCAGC 1 cut(s) 1099
Bsh1236I CGCG 1 cut(s) 772
BshFI GGCC 3 cut(s) 953, 1038, 1184
BshNI GGYRCC 1 cut(s) 502
BsiHKAI GWGCWC 1 cut(s) 533
BsiSI CCGG 3 cut(s) 177, 1042, 1303
BslFI GGGAC 1 cut(s) 666
BslI CCNNNNNNNGG 4 cut(s) 815, 1045, 1114, 1498
BsmAI GTCTC 5 cut(s) 696, 806, 979, 1008, 1160
BsmBI CGTCTC 1 cut(s) 979
BsmFI GGGAC 1 cut(s) 666
BsnI GGCC 3 cut(s) 953, 1038, 1184
Bsp1286I GDGCHC 3 cut(s) 533, 1136, 1505
Bsp13I TCCGGA 1 cut(s) 176
Bsp1407I TGTACA 1 cut(s) 761
Bsp143I GATC 6 cut(s) 179, 307, 787, 818, 891, 969
BspACI CCGC 5 cut(s) 770, 1039, 1087, 1336, 1356
BspANI GGCC 3 cut(s) 953, 1038, 1184
BspCNI CTCAG 5 cut(s) 128, 802, 1156, 1258, 1384
BspEI TCCGGA 1 cut(s) 176
BspFNI CGCG 1 cut(s) 772
BspLI GGNNCC 5 cut(s) 504, 858, 1050, 1185, 1449
BspMAI CTGCAG 4 cut(s) 278, 320, 949, 978
BspMI ACCTGC 1 cut(s) 309
BspPI GGATC 3 cut(s) 187, 826, 964
BspT107I GGYRCC 1 cut(s) 502
BsrDI GCAATG 2 cut(s) 197, 627
BsrGI TGTACA 1 cut(s) 761
BsrI ACTGG 6 cut(s) 418, 715, 820, 883, 1011, 1487
BssECI CCNNGG 1 cut(s) 899
BssMI GATC 6 cut(s) 179, 307, 787, 818, 891, 969
Bst2UI CCWGG 1 cut(s) 1553
Bst4CI ACNGT 9 cut(s) 25, 89, 302, 335, 680, 777, 886, 1389, 1562
Bst6I CTCTTC 3 cut(s) 921, 1194, 1320
BstAPI GCANNNNNTGC 1 cut(s) 273
BstAUI TGTACA 1 cut(s) 761
BstC8I GCNNGC 4 cut(s) 269, 700, 727, 1353
BstDEI CTNAG 7 cut(s) 115, 810, 864, 966, 1164, 1266, 1371
BstDSI CCRYGG 1 cut(s) 899
BstF5I GGATG 5 cut(s) 55, 585, 1050, 1294, 1519
BstFNI CGCG 1 cut(s) 772
BstHHI GCGC 1 cut(s) 1095
BstKTI GATC 6 cut(s) 182, 310, 790, 821, 894, 972
BstMAI GTCTC 5 cut(s) 696, 806, 979, 1008, 1160
BstMBI GATC 6 cut(s) 179, 307, 787, 818, 891, 969
BstNI CCWGG 1 cut(s) 1553
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 1302, 1551
BstSFI CTRYAG 4 cut(s) 274, 316, 945, 974
BstSLI GKGCMC 2 cut(s) 533, 1136
BstUI CGCG 1 cut(s) 772
BstV1I GCAGC 8 cut(s) 928, 931, 988, 1041, 1265, 1354, 1376, 1550
BstV2I GAAGAC 2 cut(s) 40, 1078
BstX2I RGATCY 2 cut(s) 818, 969
BstYI RGATCY 2 cut(s) 818, 969
BsuI GTATCC 1 cut(s) 1318
BsuRI GGCC 3 cut(s) 953, 1038, 1184
BtgI CCRYGG 1 cut(s) 899
BtrI CACGTC 1 cut(s) 989
BtsCI GGATG 5 cut(s) 55, 585, 1050, 1294, 1519
BtsI GCAGTG 5 cut(s) 271, 313, 531, 727, 1039
BtsIMutI CAGTG 7 cut(s) 94, 271, 313, 531, 727, 1039, 1385
BveI ACCTGC 1 cut(s) 309
Cac8I GCNNGC 4 cut(s) 269, 700, 727, 1353
CfoI GCGC 1 cut(s) 1095
Cfr13I GGNCC 1 cut(s) 1183
CseI GACGC 2 cut(s) 69, 1427
Csp6I GTAC 4 cut(s) 69, 262, 762, 803
CviAII CATG 4 cut(s) 5, 153, 223, 756
CviQI GTAC 4 cut(s) 69, 262, 762, 803
DdeI CTNAG 7 cut(s) 115, 810, 864, 966, 1164, 1266, 1371
DpnI GATC 6 cut(s) 181, 309, 789, 820, 893, 971
DpnII GATC 6 cut(s) 179, 307, 787, 818, 891, 969
DraIII CACNNNGTG 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 1036
Eam1104I CTCTTC 3 cut(s) 921, 1194, 1320
EarI CTCTTC 3 cut(s) 921, 1194, 1320
Eco24I GRGCYC 1 cut(s) 1505
Eco32I GATATC 1 cut(s) 1291
Eco57I CTGAAG 1 cut(s) 1175
EcoRII CCWGG 1 cut(s) 1551
EcoRV GATATC 1 cut(s) 1291
EcoT22I ATGCAT 2 cut(s) 6, 757
EcoT38I GRGCYC 1 cut(s) 1505
Esp3I CGTCTC 1 cut(s) 979
FaeI CATG 4 cut(s) 8, 156, 226, 759
FaqI GGGAC 1 cut(s) 666
FatI CATG 4 cut(s) 4, 152, 222, 755
FauI CCCGC 1 cut(s) 1080
FauNDI CATATG 1 cut(s) 616
FbaI TGATCA 1 cut(s) 307
FokI GGATG 5 cut(s) 62, 572, 1057, 1281, 1526
FriOI GRGCYC 1 cut(s) 1505
FspBI CTAG 3 cut(s) 1176, 1401, 1548
GlaI GCGC 1 cut(s) 1094
GsaI CCCAGC 1 cut(s) 1103
GsuI CTGGAG 1 cut(s) 1504
HaeIII GGCC 3 cut(s) 953, 1038, 1184
HapII CCGG 3 cut(s) 177, 1042, 1303
HgaI GACGC 2 cut(s) 69, 1427
HhaI GCGC 1 cut(s) 1095
Hin1II CATG 4 cut(s) 8, 156, 226, 759
Hin6I GCGC 1 cut(s) 1093
HinP1I GCGC 1 cut(s) 1093
HincII GTYRAC 4 cut(s) 298, 411, 1398, 1473
HindII GTYRAC 4 cut(s) 298, 411, 1398, 1473
HinfI GANTC 6 cut(s) 191, 417, 606, 904, 1280, 1380
HpaII CCGG 3 cut(s) 177, 1042, 1303
HphI GGTGA 4 cut(s) 141, 358, 737, 1275
Hpy166II GTNNAC 8 cut(s) 298, 411, 531, 762, 764, 903, 1398, 1473
Hpy188I TCNGA 5 cut(s) 118, 1206, 1374, 1507, 1574
Hpy188III TCNNGA 4 cut(s) 41, 177, 1265, 1317
Hpy8I GTNNAC 8 cut(s) 298, 411, 531, 762, 764, 903, 1398, 1473
HpyAV CCTTC 7 cut(s) 97, 212, 595, 1118, 1309, 1369, 1502
HpyCH4III ACNGT 9 cut(s) 25, 89, 302, 335, 680, 777, 886, 1389, 1562
HpyCH4IV ACGT 1 cut(s) 988
HpyF3I CTNAG 7 cut(s) 115, 810, 864, 966, 1164, 1266, 1371
HpySE526I ACGT 1 cut(s) 988
Hsp92II CATG 4 cut(s) 8, 156, 226, 759
HspAI GCGC 1 cut(s) 1093
Kpn2I TCCGGA 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 6 cut(s) 179, 307, 787, 818, 891, 969
LmnI GCTCC 6 cut(s) 179, 640, 646, 734, 1244, 1319
Lsp1109I GCAGC 8 cut(s) 928, 931, 988, 1041, 1265, 1354, 1376, 1550
LweI GCATC 3 cut(s) 40, 1430, 1550
MaeI CTAG 3 cut(s) 1176, 1401, 1548
MaeII ACGT 1 cut(s) 988
MaeIII GTNAC 4 cut(s) 19, 284, 376, 1439
MalI GATC 6 cut(s) 181, 309, 789, 820, 893, 971
MboI GATC 6 cut(s) 179, 307, 787, 818, 891, 969
MflI RGATCY 2 cut(s) 818, 969
MhlI GDGCHC 3 cut(s) 533, 1136, 1505
MluCI AATT 3 cut(s) 121, 349, 359
MlyI GAGTC 2 cut(s) 898, 1274
MmeI TCCRAC 2 cut(s) 7, 108
Mph1103I ATGCAT 2 cut(s) 6, 757
MroI TCCGGA 1 cut(s) 176
MseI TTAA 5 cut(s) 134, 635, 716, 917, 1124
MslI CAYNNNNRTG 4 cut(s) 371, 461, 518, 750
MspA1I CMGCKG 2 cut(s) 1103, 1367
MspI CCGG 3 cut(s) 177, 1042, 1303
MspR9I CCNGG 2 cut(s) 1304, 1553
MvaI CCWGG 1 cut(s) 1553
MvnI CGCG 1 cut(s) 772
NciI CCSGG 1 cut(s) 1304
NdeI CATATG 1 cut(s) 616
NdeII GATC 6 cut(s) 179, 307, 787, 818, 891, 969
NlaIII CATG 4 cut(s) 8, 156, 226, 759
NlaIV GGNNCC 5 cut(s) 504, 858, 1050, 1185, 1449
NmeAIII GCCGAG 1 cut(s) 1250
NmuCI GTSAC 3 cut(s) 19, 284, 1439
NsiI ATGCAT 2 cut(s) 6, 757
NspI RCATGY 1 cut(s) 226
PaqCI CACCTGC 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 516
PfeI GAWTC 4 cut(s) 191, 417, 606, 1380
PleI GAGTC 2 cut(s) 898, 1274
PpsI GAGTC 2 cut(s) 898, 1274
PsiI TTATAA 1 cut(s) 596
Psp6I CCWGG 1 cut(s) 1551
PspFI CCCAGC 1 cut(s) 1099
PspGI CCWGG 1 cut(s) 1551
PspN4I GGNNCC 5 cut(s) 504, 858, 1050, 1185, 1449
PspPI GGNCC 1 cut(s) 1183
PstI CTGCAG 4 cut(s) 278, 320, 949, 978
PsuI RGATCY 2 cut(s) 818, 969
PvuII CAGCTG 2 cut(s) 1103, 1367
RsaI GTAC 4 cut(s) 70, 263, 763, 804
RsaNI GTAC 4 cut(s) 69, 262, 762, 803
RseI CAYNNNNRTG 4 cut(s) 371, 461, 518, 750
SaqAI TTAA 5 cut(s) 134, 635, 716, 917, 1124
Sau3AI GATC 6 cut(s) 179, 307, 787, 818, 891, 969
Sau96I GGNCC 1 cut(s) 1183
SchI GAGTC 2 cut(s) 898, 1274
ScrFI CCNGG 2 cut(s) 1304, 1553
SduI GDGCHC 3 cut(s) 533, 1136, 1505
SfaNI GCATC 3 cut(s) 40, 1430, 1550
SfcI CTRYAG 4 cut(s) 274, 316, 945, 974
SmiMI CAYNNNNRTG 4 cut(s) 371, 461, 518, 750
SpeI ACTAGT 2 cut(s) 1175, 1400
Sse9I AATT 3 cut(s) 121, 349, 359
SsiI CCGC 5 cut(s) 770, 1039, 1087, 1336, 1356
SspMI CTAG 3 cut(s) 1176, 1401, 1548
StyD4I CCNGG 2 cut(s) 1302, 1551
TaaI ACNGT 9 cut(s) 25, 89, 302, 335, 680, 777, 886, 1389, 1562
TaiI ACGT 1 cut(s) 991
TaqI TCGA 3 cut(s) 355, 1003, 1172
TasI AATT 3 cut(s) 121, 349, 359
TatI WGTACW 2 cut(s) 261, 761
TauI GCSGC 3 cut(s) 1041, 1339, 1358
TfiI GAWTC 4 cut(s) 191, 417, 606, 1380
Tru1I TTAA 5 cut(s) 134, 635, 716, 917, 1124
Tru9I TTAA 5 cut(s) 134, 635, 716, 917, 1124
TscAI CASTG 7 cut(s) 94, 278, 320, 531, 727, 1039, 1392
TseFI GTSAC 3 cut(s) 19, 284, 1439
TseI GCWGC 8 cut(s) 941, 944, 976, 1029, 1253, 1364, 1367, 1538
Tsp45I GTSAC 3 cut(s) 19, 284, 1439
TspDTI ATGAA 3 cut(s) 21, 186, 1530
TspGWI ACGGA 1 cut(s) 888
TspRI CASTG 7 cut(s) 94, 278, 320, 531, 727, 1039, 1392
VneI GTGCAC 1 cut(s) 529
XapI RAATTY 1 cut(s) 121
XceI RCATGY 1 cut(s) 226
XspI CTAG 3 cut(s) 1176, 1401, 1548
Zsp2I ATGCAT 2 cut(s) 6, 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.