Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010267

Physical Location & Seq

Genomic Coordinates Forward (+)

49016248 .. 49019922

Gene Structure 3675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0315300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGTAGAGGAACAAGTACTTCAAATTTGAAGTCTAGAATCACTAGGCTGCTTCTGCTTCTGCTATTCCTATTCTGCTCAACTGTTCAGTGCCTAGAAACTGAGCCTCCATCGCCGTCAAACCACCCTCACTCCAAGAACAACGAGCTTGAAAGAATCATTCTTAGTCTTGTGTTGGGAGTATTGACCGGACTCATACTTGCTCTTATCTCTGCTTTCATTGTCCACTGCTTTGTTCGCTACATTAGCAGAACCCCAATTCTCAAGGGCCCTGTAATTTTCTCCCCGAAAATCGCTCCGAAAACGCTCCAATTAGCACTGGCGAGTGAGAATCAGTTGCTTGGTTCGAGCCCAAATGGCAAGTACTACAGGACTGTGCTTGACAATGGGCTCATTATTGCAGTGAAGCAGCTGGAGCCCTTTTCGGAGTGTGGCTCACCCGAGGCTCAGAGCAAGTCTGCCAAGAGAAGGATACAGCAGGAGCTGGAAGTGCTTGCTGGCCTGAGACACAGGCATTTGATGAGTTTGAGGGCTTATGTTCGCGAGCACGATAGGTTCTCTTTGGTTTATGATTTTGTGCCCAATGGGAGCCTGGAGGATGCTATGAATAGAGTTAGGGAGAATCAGTTGCAGCTCAGTTGGGAGGTTCGGCTTCGGATTGCAGTTGGGGTGATTAAGGGGCTTCAGTATCTTCATGCATATGTGCCTCAGATTATGCATAACAACTTGAAGCCGAGAAATGTTATGTTGGATGCTGAGTTTGAACCGAGGTTGGGAGATTATGGGTTGGCTAAGCTCACTCCCCATTTGGATGGGGCATTATCTGGTTACACTGCTCCAGAGTGTTTCCAGAATGACAGGTACACTGATAAGAGCGACATTTTCAGCTTTGGGATGATATTGGGAGTTTTACTAACTGGTAGAGACCCAACTGATCCCTTCTTTGGGGAAACATCCAGCGGAGGAAGTTTAGGACGGTGGCTGCGGCACTTGCAGCATGCAGGGGAGGCACGGGAAGCGTTAGATAAGAGCCTTATTGGGGAAGAAGGAGAGGAAGATGAAATGTTAATGGCGGTGAGAATTGCTGTCGTATGCTTATCAGATGTGCCAGCAGAAAGACCCTCAAGTGATGAACTTGTTCACATGCTAACCCAACTGCACAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

DHHC

Protein Analysis

389

Amino Acids

43.45

Weight (kDa)

6.68

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	111 - 380	2.1e-30	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	114 - 311	9.9e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69420 AT1G69420
fragaria_vesca	FvH4_4g30660 FvH4_4g30660
malus_domestica	MD13G1067800.v1.1
prunus_persica	Prupe.1G280400_v2.0.a1 Prupe.1G280400_v2.0.a1
pyrus_communis	pycom13g05960 pycom16g05810
rosa_chinensis	RchiOBHm_Chr4g0439071
rosa_laevigata	RLG00000006304
rosa_multiflora	Rmu_sc0001338.1_g000001 Rmu_sc0012017.1_g000008
rosa_roxburghii	Rroxscaffold_5G00380060
rosa_rugosa	Rorug04G0315300
rosa_samantha	Rh4AG366100 Rh4BG377500 Rh4CG391600 Rh4DG372200
rosa_wichuraiana	Rw0G007440 Rw0G016990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	543
AciI	CCGC	3 cut(s)	960, 985, 1073
AclWI	GGATC	1 cut(s)	929
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	668
AfaI	GTAC	3 cut(s)	19, 365, 863
AfiI	CCNNNNNNNGG	5 cut(s)	468, 773, 944, 945, 1039
AgsI	TTSAA	5 cut(s)	24, 31, 152, 730, 764
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	6 cut(s)	148, 412, 484, 634, 796, 888
AluI	AGCT	6 cut(s)	148, 412, 484, 634, 796, 888
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	2 cut(s)	499, 918
AlwI	GGATC	1 cut(s)	929
AlwNI	CAGNNNCTG	1 cut(s)	484
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	2 cut(s)	268, 499
ApaI	GGGCCC	1 cut(s)	272
ApeKI	GCWGC	5 cut(s)	49, 409, 631, 982, 994
ApoI	RAATTY	1 cut(s)	25
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
Asp700I	GAANNNNTTC	1 cut(s)	1137
AspS9I	GGNCC	2 cut(s)	268, 269
AsuHPI	GGTGA	3 cut(s)	429, 682, 1087
AvaI	CYCGRG	1 cut(s)	440
BaeGI	GKGCMC	2 cut(s)	272, 582
BanII	GRGCYC	4 cut(s)	272, 353, 393, 420
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	5 cut(s)	36, 421, 643, 969, 1006
BccI	CCATC	2 cut(s)	118, 806
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	593
BciVI	GTATCC	1 cut(s)	465
BcoDI	GTCTC	2 cut(s)	499, 918
BfaI	CTAG	3 cut(s)	36, 45, 95
BfmI	CTRYAG	1 cut(s)	367
BfuI	GTATCC	1 cut(s)	465
BglI	GCCNNNNNGGC	1 cut(s)	357
BisI	GCNGC	6 cut(s)	50, 410, 632, 983, 986, 995
BlpI	GCTNAGC	1 cut(s)	792
BlsI	GCNGC	6 cut(s)	51, 411, 633, 984, 987, 996
BmcAI	AGTACT	2 cut(s)	19, 365
Bme1390I	CCNGG	1 cut(s)	593
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	268, 269
BmiI	GGNNCC	3 cut(s)	270, 417, 590
BmrFI	CCNGG	1 cut(s)	593
BmsI	GCATC	2 cut(s)	589, 742
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpmI	CTGGAG	3 cut(s)	434, 614, 822
Bpu1102I	GCTNAGC	1 cut(s)	792
BpuEI	CTTGAG	2 cut(s)	248, 1108
BsaI	GGTCTC	1 cut(s)	918
BsaJI	CCNNGG	2 cut(s)	441, 767
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	6 cut(s)	91, 116, 121, 146, 611, 641
Bsc4I	CCNNNNNNNGG	5 cut(s)	468, 773, 944, 945, 1039
Bse1I	ACTGG	2 cut(s)	324, 922
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	441, 767
BseGI	GGATG	5 cut(s)	604, 757, 817, 900, 953
BseLI	CCNNNNNNNGG	5 cut(s)	468, 773, 944, 945, 1039
BseMII	CTCAG	6 cut(s)	93, 461, 494, 649, 722, 747
BseNI	ACTGG	2 cut(s)	324, 922
BseSI	GKGCMC	2 cut(s)	272, 582
BseXI	GCAGC	5 cut(s)	36, 421, 643, 969, 1006
BsgI	GTGCAG	1 cut(s)	1142
Bsh1236I	CGCG	1 cut(s)	543
BshFI	GGCC	2 cut(s)	270, 501
BsiHKAI	GWGCWC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	5 cut(s)	468, 773, 944, 945, 1039
BsmAI	GTCTC	2 cut(s)	499, 918
BsnI	GGCC	2 cut(s)	270, 501
Bso31I	GGTCTC	1 cut(s)	918
BsoBI	CYCGRG	1 cut(s)	440
Bsp120I	GGGCCC	1 cut(s)	268
Bsp1286I	GDGCHC	6 cut(s)	272, 353, 393, 420, 549, 582
Bsp143I	GATC	1 cut(s)	934
Bsp1720I	GCTNAGC	1 cut(s)	792
Bsp68I	TCGCGA	1 cut(s)	543
BspACI	CCGC	3 cut(s)	960, 985, 1073
BspANI	GGCC	2 cut(s)	270, 501
BspCNI	CTCAG	6 cut(s)	94, 460, 495, 648, 721, 748
BspFNI	CGCG	1 cut(s)	543
BspLI	GGNNCC	3 cut(s)	270, 417, 590
BspPI	GGATC	1 cut(s)	929
BspTNI	GGTCTC	1 cut(s)	918
BsrI	ACTGG	2 cut(s)	324, 922
BssECI	CCNNGG	2 cut(s)	441, 767
BssMI	GATC	1 cut(s)	934
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	4 cut(s)	85, 376, 978, 1163
BstC8I	GCNNGC	5 cut(s)	495, 499, 545, 999, 1110
BstDEI	CTNAG	8 cut(s)	102, 164, 447, 503, 635, 708, 756, 792
BstF5I	GGATG	5 cut(s)	604, 757, 817, 900, 953
BstFNI	CGCG	1 cut(s)	543
BstKTI	GATC	1 cut(s)	937
BstMAI	GTCTC	2 cut(s)	499, 918
BstMBI	GATC	1 cut(s)	934
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	2 cut(s)	1001, 1147
BstSCI	CCNGG	1 cut(s)	591
BstSFI	CTRYAG	1 cut(s)	367
BstSLI	GKGCMC	2 cut(s)	272, 582
BstUI	CGCG	1 cut(s)	543
BstV1I	GCAGC	5 cut(s)	36, 421, 643, 969, 1006
BstXI	CCANNNNNNTGG	1 cut(s)	812
BsuI	GTATCC	1 cut(s)	465
BsuRI	GGCC	2 cut(s)	270, 501
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	5 cut(s)	604, 757, 817, 900, 953
BtsI	GCAGTG	3 cut(s)	226, 408, 831
BtsIMutI	CAGTG	6 cut(s)	95, 226, 317, 408, 831, 864
BtuMI	TCGCGA	1 cut(s)	543
Cac8I	GCNNGC	5 cut(s)	495, 499, 545, 999, 1110
CaiI	CAGNNNCTG	1 cut(s)	484
Cfr13I	GGNCC	2 cut(s)	268, 269
Csp6I	GTAC	3 cut(s)	18, 364, 862
CviAII	CATG	3 cut(s)	695, 998, 1144
CviQI	GTAC	3 cut(s)	18, 364, 862
DdeI	CTNAG	8 cut(s)	102, 164, 447, 503, 635, 708, 756, 792
DpnI	GATC	1 cut(s)	936
DpnII	GATC	1 cut(s)	934
Eco24I	GRGCYC	4 cut(s)	272, 353, 393, 420
Eco31I	GGTCTC	1 cut(s)	918
Eco57I	CTGAAG	1 cut(s)	668
Eco88I	CYCGRG	1 cut(s)	440
EcoO109I	RGGNCCY	2 cut(s)	268, 269
EcoRII	CCWGG	1 cut(s)	591
EcoT22I	ATGCAT	2 cut(s)	700, 720
EcoT38I	GRGCYC	4 cut(s)	272, 353, 393, 420
FaeI	CATG	3 cut(s)	698, 1001, 1147
FatI	CATG	3 cut(s)	694, 997, 1143
FauNDI	CATATG	1 cut(s)	700
Fnu4HI	GCNGC	6 cut(s)	50, 410, 632, 983, 986, 995
FokI	GGATG	5 cut(s)	611, 764, 824, 907, 940
FriOI	GRGCYC	4 cut(s)	272, 353, 393, 420
Fsp4HI	GCNGC	6 cut(s)	50, 410, 632, 983, 986, 995
FspBI	CTAG	3 cut(s)	36, 45, 95
GluI	GCNGC	6 cut(s)	50, 410, 632, 983, 986, 995
GsuI	CTGGAG	3 cut(s)	434, 614, 822
HaeIII	GGCC	2 cut(s)	270, 501
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	3 cut(s)	698, 1001, 1147
HinfI	GANTC	5 cut(s)	39, 156, 192, 331, 622
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	3 cut(s)	429, 682, 1087
Hpy166II	GTNNAC	3 cut(s)	226, 864, 1141
Hpy188I	TCNGA	6 cut(s)	300, 427, 450, 657, 711, 1102
Hpy188III	TCNNGA	4 cut(s)	36, 542, 839, 850
Hpy8I	GTNNAC	3 cut(s)	226, 864, 1141
HpyAV	CCTTC	3 cut(s)	462, 949, 1040
HpyCH4III	ACNGT	4 cut(s)	85, 376, 978, 1163
HpyCH4V	TGCA	8 cut(s)	401, 631, 662, 698, 718, 994, 1001, 1159
HpyF3I	CTNAG	8 cut(s)	102, 164, 447, 503, 635, 708, 756, 792
Hsp92II	CATG	3 cut(s)	698, 1001, 1147
Kzo9I	GATC	1 cut(s)	934
LmnI	GCTCC	6 cut(s)	301, 312, 415, 481, 588, 841
Lsp1109I	GCAGC	5 cut(s)	36, 421, 643, 969, 1006
LweI	GCATC	2 cut(s)	589, 742
MaeI	CTAG	3 cut(s)	36, 45, 95
MaeIII	GTNAC	1 cut(s)	827
MalI	GATC	1 cut(s)	936
MboI	GATC	1 cut(s)	934
MboII	GAAGA	3 cut(s)	683, 1055, 1067
MhlI	GDGCHC	6 cut(s)	272, 353, 393, 420, 549, 582
MluCI	AATT	5 cut(s)	25, 258, 276, 311, 1080
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	729
Mph1103I	ATGCAT	2 cut(s)	700, 720
MroXI	GAANNNNTTC	1 cut(s)	1137
MseI	TTAA	3 cut(s)	675, 1067, 1168
MslI	CAYNNNNRTG	2 cut(s)	699, 810
MspA1I	CMGCKG	2 cut(s)	412, 960
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	593
MvnI	CGCG	1 cut(s)	543
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	1 cut(s)	934
NlaIII	CATG	3 cut(s)	698, 1001, 1147
NlaIV	GGNNCC	3 cut(s)	270, 417, 590
NmeAIII	GCCGAG	1 cut(s)	759
NruI	TCGCGA	1 cut(s)	543
NsiI	ATGCAT	2 cut(s)	700, 720
NspI	RCATGY	2 cut(s)	1001, 1147
PaeI	GCATGC	1 cut(s)	1001
PdmI	GAANNNNTTC	1 cut(s)	1137
PfeI	GAWTC	4 cut(s)	39, 156, 331, 622
PkrI	GCNGC	6 cut(s)	51, 411, 633, 984, 987, 996
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	3 cut(s)	270, 417, 590
PspOMI	GGGCCC	1 cut(s)	268
PspPI	GGNCC	2 cut(s)	268, 269
PstNI	CAGNNNCTG	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	412
RruI	TCGCGA	1 cut(s)	543
RsaI	GTAC	3 cut(s)	19, 365, 863
RsaNI	GTAC	3 cut(s)	18, 364, 862
RseI	CAYNNNNRTG	2 cut(s)	699, 810
SaqAI	TTAA	3 cut(s)	675, 1067, 1168
SatI	GCNGC	6 cut(s)	50, 410, 632, 983, 986, 995
Sau3AI	GATC	1 cut(s)	934
Sau96I	GGNCC	2 cut(s)	268, 269
ScaI	AGTACT	2 cut(s)	19, 365
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	593
SduI	GDGCHC	6 cut(s)	272, 353, 393, 420, 549, 582
SfaNI	GCATC	2 cut(s)	589, 742
SfcI	CTRYAG	1 cut(s)	367
SmiMI	CAYNNNNRTG	2 cut(s)	699, 810
SmlI	CTYRAG	2 cut(s)	263, 1123
SmoI	CTYRAG	2 cut(s)	263, 1123
SphI	GCATGC	1 cut(s)	1001
Sse9I	AATT	5 cut(s)	25, 258, 276, 311, 1080
SsiI	CCGC	3 cut(s)	960, 985, 1073
SspMI	CTAG	3 cut(s)	36, 45, 95
StyD4I	CCNGG	1 cut(s)	591
TaaI	ACNGT	4 cut(s)	85, 376, 978, 1163
TaqI	TCGA	1 cut(s)	347
TasI	AATT	5 cut(s)	25, 258, 276, 311, 1080
TatI	WGTACW	2 cut(s)	17, 363
TauI	GCSGC	1 cut(s)	988
TfiI	GAWTC	4 cut(s)	39, 156, 331, 622
Tru1I	TTAA	3 cut(s)	675, 1067, 1168
Tru9I	TTAA	3 cut(s)	675, 1067, 1168
TscAI	CASTG	6 cut(s)	95, 233, 324, 408, 838, 871
TseI	GCWGC	5 cut(s)	49, 409, 631, 982, 994
TspDTI	ATGAA	5 cut(s)	208, 620, 683, 1074, 1146
TspRI	CASTG	6 cut(s)	95, 233, 324, 408, 838, 871
XapI	RAATTY	1 cut(s)	25
XbaI	TCTAGA	1 cut(s)	35
XceI	RCATGY	2 cut(s)	1001, 1147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	1137
XspI	CTAG	3 cut(s)	36, 45, 95
ZrmI	AGTACT	2 cut(s)	19, 365
Zsp2I	ATGCAT	2 cut(s)	700, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.