Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012829

Physical Location & Seq

Genomic Coordinates Forward (+)

26258788 .. 26260781

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTCTTGTAATAATGGAATGTCTTTTTTCCCTTCAAATTTCATGATCCAAACCTCTTACGAAGATGATCATCCTCATCAATCTCCATCTCTTGCTCCTCTTCTTCCTTCTTGCTCTCTACCTCAAGATCTCCATGGATTTGCTTCGTTTCTAGGTAAGAGATCTCCAATGGAAGGGTGTTGTGATTTAGAAACAGGGAACAATATGAATGGAGAAGAGGATTATTCAGATGATGGGTCACAAATGGGAGAGAAGAAGAGGAGATTGAACATGGAACAAGTGAAGACACTAGAGAAGAACTTTGAGCTTGGAAACAAACTTGAACCAGAGAGGAAAATGCAGCTAGCTCGTGCCTTAGGTTTGCAACCAAGACAGATCGCGATTTGGTTTCAAAATCGAAGAGCTCGTTGGAAAACAAAGCAGCTAGAGAAAGATTATGATACTCTTAAACGACAGTTTGATACACTTAAAGCTGAAAATGATCTTCTTCAAACTCATAATCAGAAACTCCAAGCTGAGATAATGGGATTAAAAAACAGAGAACAAACAGAATCAATAAATCTAAACAAAGAAACTGAAGGATCTTGCAGTAACAGAAGTGATAACAGTTCAGATAATCTCAGACTAGATATCTCAACTGCGCCGCCATCAAACGACAGTACATTAACCGGTGGCCACCCACCGCCACCACAGACAGTTGGTCGACACTTCTTCCCACCGTCGCCAGCCACCGCAACGACAACTACTACAACAATGCAGTTCTTTCAAAACTCATCTTCAGGACAGAGTATGGTTAAAGAAGAGAATAGTATCAGTAACATGTTCTGTGCAATGGATGACCATTCTGGTTTTTGGCCATGGCTTGATCAGCAACAGTACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0034285 GO:0042221 GO:0043565 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

294

Amino Acids

33.34

Weight (kDa)

5.44

Isoelectric Point (pI)

65.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	85 - 138	1e-15	Homeodomain
HALZ	PF02183	140 - 182	1.3e-16	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69780
fragaria_vesca	FvH4_4g31640
malus_domestica	MD13G1074800.v1.1 MD16G1076000.v1.1
prunus_persica	Prupe.1G271400_v2.0.a1 Prupe.1G271400_v2.0.a1
pyrus_communis	pycom13g06660 pycom16g06590
rosa_chinensis	RchiOBHm_Chr4g0440141
rosa_laevigata	RLG00000006202
rosa_multiflora	Rmu_sc0001685.1_g000019
rosa_roxburghii	Rroxscaffold_5G00381070
rosa_rugosa	Rorug04G0324700
rosa_samantha	Rh4AG375500 Rh4BG387900 Rh4CG402500 Rh4DG382100
rosa_wichuraiana	Rw4G032130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	703
AccII	CGCG	1 cut(s)	380
AciI	CCGC	3 cut(s)	644, 683, 732
AclWI	GGATC	2 cut(s)	40, 589
AcoI	YGGCCR	2 cut(s)	673, 854
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	2 cut(s)	597, 762
AfaI	GTAC	2 cut(s)	661, 878
AfiI	CCNNNNNNNGG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	819
AgeI	ACCGGT	1 cut(s)	668
AgsI	TTSAA	6 cut(s)	36, 268, 323, 392, 491, 767
AhdI	GACNNNNNGTC	1 cut(s)	699
AjuI	GAANNNNNNNTTGG	2 cut(s)	391, 423
AluBI	AGCT	7 cut(s)	307, 343, 347, 404, 424, 473, 515
AluI	AGCT	7 cut(s)	307, 343, 347, 404, 424, 473, 515
Alw21I	GWGCWC	1 cut(s)	406
AlwI	GGATC	2 cut(s)	40, 589
AoxI	GGCC	2 cut(s)	673, 854
ApeKI	GCWGC	2 cut(s)	340, 421
ApoI	RAATTY	1 cut(s)	37
AsiGI	ACCGGT	1 cut(s)	668
AspLEI	GCGC	1 cut(s)	643
AsuNHI	GCTAGC	1 cut(s)	343
AxyI	CCTNAGG	1 cut(s)	355
BalI	TGGCCA	2 cut(s)	675, 856
BanII	GRGCYC	1 cut(s)	406
BauI	CACGAG	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	2 cut(s)	352, 433
BccI	CCATC	3 cut(s)	94, 227, 655
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BclI	TGATCA	2 cut(s)	67, 865
BfaI	CTAG	5 cut(s)	152, 290, 344, 425, 626
BglII	AGATCT	2 cut(s)	127, 161
BisI	GCNGC	3 cut(s)	341, 422, 644
BlsI	GCNGC	3 cut(s)	342, 423, 645
BmeRI	GACNNNNNGTC	1 cut(s)	699
BmtI	GCTAGC	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	133, 857
BsaWI	WCCGGW	1 cut(s)	668
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse118I	RCCGGY	1 cut(s)	668
Bse21I	CCTNAGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	837
Bse8I	GATNNNNATC	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	133, 857
BseGI	GGATG	2 cut(s)	70, 841
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	2 cut(s)	507, 634
BseRI	GAGGAG	2 cut(s)	87, 274
BseXI	GCAGC	2 cut(s)	352, 433
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	2 cut(s)	675, 856
BshTI	ACCGGT	1 cut(s)	668
BsiHKAI	GWGCWC	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	669
BslI	CCNNNNNNNGG	1 cut(s)	173
BsnI	GGCC	2 cut(s)	675, 856
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	8 cut(s)	45, 67, 127, 161, 375, 481, 581, 865
Bsp19I	CCATGG	2 cut(s)	133, 857
Bsp68I	TCGCGA	1 cut(s)	380
BspACI	CCGC	3 cut(s)	644, 683, 732
BspANI	GGCC	2 cut(s)	675, 856
BspCNI	CTCAG	2 cut(s)	508, 633
BspFNI	CGCG	1 cut(s)	380
BspHI	TCATGA	1 cut(s)	42
BspOI	GCTAGC	1 cut(s)	347
BspPI	GGATC	2 cut(s)	40, 589
BspQI	GCTCTTC	1 cut(s)	394
BsrDI	GCAATG	1 cut(s)	837
BsrFI	RCCGGY	1 cut(s)	668
BssAI	RCCGGY	1 cut(s)	668
BssECI	CCNNGG	2 cut(s)	133, 857
BssMI	GATC	8 cut(s)	45, 67, 127, 161, 375, 481, 581, 865
BssSI	CACGAG	1 cut(s)	348
BssT1I	CCWWGG	2 cut(s)	133, 857
Bst2BI	CACGAG	1 cut(s)	348
Bst4CI	ACNGT	6 cut(s)	456, 608, 659, 697, 720, 876
Bst6I	CTCTTC	5 cut(s)	105, 210, 251, 394, 795
BstC8I	GCNNGC	2 cut(s)	345, 726
BstDEI	CTNAG	3 cut(s)	355, 516, 620
BstDSI	CCRYGG	2 cut(s)	133, 857
BstF5I	GGATG	2 cut(s)	70, 841
BstFNI	CGCG	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	8 cut(s)	48, 70, 130, 164, 378, 484, 584, 868
BstMBI	GATC	8 cut(s)	45, 67, 127, 161, 375, 481, 581, 865
BstMWI	GCNNNNNNNGC	1 cut(s)	868
BstNSI	RCATGY	1 cut(s)	823
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	352, 433
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	3 cut(s)	127, 161, 581
BstYI	RGATCY	3 cut(s)	127, 161, 581
Bsu36I	CCTNAGG	1 cut(s)	355
BsuRI	GGCC	2 cut(s)	675, 856
BtgI	CCRYGG	2 cut(s)	133, 857
BtsCI	GGATG	2 cut(s)	70, 841
BtuMI	TCGCGA	1 cut(s)	380
Cac8I	GCNNGC	2 cut(s)	345, 726
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	1 cut(s)	643
Cfr10I	RCCGGY	1 cut(s)	668
Csp6I	GTAC	2 cut(s)	660, 877
CspAI	ACCGGT	1 cut(s)	668
CviAII	CATG	5 cut(s)	43, 134, 271, 820, 858
CviQI	GTAC	2 cut(s)	660, 877
DdeI	CTNAG	3 cut(s)	355, 516, 620
DpnI	GATC	8 cut(s)	47, 69, 129, 163, 377, 483, 583, 867
DpnII	GATC	8 cut(s)	45, 67, 127, 161, 375, 481, 581, 865
DriI	GACNNNNNGTC	1 cut(s)	699
EaeI	YGGCCR	2 cut(s)	673, 854
Eam1104I	CTCTTC	5 cut(s)	105, 210, 251, 394, 795
Eam1105I	GACNNNNNGTC	1 cut(s)	699
EarI	CTCTTC	5 cut(s)	105, 210, 251, 394, 795
Ecl136II	GAGCTC	1 cut(s)	404
Eco130I	CCWWGG	2 cut(s)	133, 857
Eco24I	GRGCYC	1 cut(s)	406
Eco32I	GATATC	1 cut(s)	631
Eco53kI	GAGCTC	1 cut(s)	404
Eco57I	CTGAAG	2 cut(s)	597, 762
Eco81I	CCTNAGG	1 cut(s)	355
EcoICRI	GAGCTC	1 cut(s)	404
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	2 cut(s)	133, 857
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	2 cut(s)	133, 857
FaeI	CATG	5 cut(s)	46, 137, 274, 823, 861
FaiI	YATR	9 cut(s)	44, 135, 206, 272, 438, 498, 791, 821, 859
FatI	CATG	5 cut(s)	42, 133, 270, 819, 857
FbaI	TGATCA	2 cut(s)	67, 865
FblI	GTMKAC	1 cut(s)	703
Fnu4HI	GCNGC	3 cut(s)	341, 422, 644
FokI	GGATG	2 cut(s)	57, 848
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	3 cut(s)	341, 422, 644
FspBI	CTAG	5 cut(s)	152, 290, 344, 425, 626
GlaI	GCGC	1 cut(s)	642
GluI	GCNGC	3 cut(s)	341, 422, 644
HaeIII	GGCC	2 cut(s)	675, 856
HapII	CCGG	1 cut(s)	669
HhaI	GCGC	1 cut(s)	643
Hin1II	CATG	5 cut(s)	46, 137, 274, 823, 861
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HincII	GTYRAC	1 cut(s)	704
HindII	GTYRAC	1 cut(s)	704
HinfI	GANTC	1 cut(s)	551
HpaII	CCGG	1 cut(s)	669
Hpy166II	GTNNAC	1 cut(s)	704
Hpy188I	TCNGA	4 cut(s)	229, 504, 613, 623
Hpy188III	TCNNGA	4 cut(s)	43, 125, 379, 780
Hpy8I	GTNNAC	1 cut(s)	704
Hpy99I	CGWCG	1 cut(s)	724
HpyAV	CCTTC	4 cut(s)	42, 117, 167, 572
HpyCH4III	ACNGT	6 cut(s)	456, 608, 659, 697, 720, 876
HpyCH4V	TGCA	5 cut(s)	340, 364, 588, 757, 830
HpyF10VI	GCNNNNNNNGC	1 cut(s)	868
HpyF3I	CTNAG	3 cut(s)	355, 516, 620
Hsp92II	CATG	5 cut(s)	46, 137, 274, 823, 861
HspAI	GCGC	1 cut(s)	641
Ksp22I	TGATCA	2 cut(s)	67, 865
Kzo9I	GATC	8 cut(s)	45, 67, 127, 161, 375, 481, 581, 865
LguI	GCTCTTC	1 cut(s)	394
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	6 cut(s)	180, 339, 682, 738, 765, 831
Lsp1109I	GCAGC	2 cut(s)	352, 433
MaeI	CTAG	5 cut(s)	152, 290, 344, 425, 626
MaeIII	GTNAC	3 cut(s)	237, 590, 815
MalI	GATC	8 cut(s)	47, 69, 129, 163, 377, 483, 583, 867
MboI	GATC	8 cut(s)	45, 67, 127, 161, 375, 481, 581, 865
MfeI	CAATTG	1 cut(s)	880
MflI	RGATCY	3 cut(s)	127, 161, 581
MhlI	GDGCHC	1 cut(s)	406
MlsI	TGGCCA	2 cut(s)	675, 856
MluCI	AATT	2 cut(s)	37, 880
MluNI	TGGCCA	2 cut(s)	675, 856
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	7 cut(s)	64, 84, 108, 132, 211, 252, 324
Mox20I	TGGCCA	2 cut(s)	675, 856
MscI	TGGCCA	2 cut(s)	675, 856
MseI	TTAA	5 cut(s)	447, 468, 530, 665, 795
Msp20I	TGGCCA	2 cut(s)	675, 856
MspI	CCGG	1 cut(s)	669
MunI	CAATTG	1 cut(s)	880
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	868
NcoI	CCATGG	2 cut(s)	133, 857
NdeII	GATC	8 cut(s)	45, 67, 127, 161, 375, 481, 581, 865
NheI	GCTAGC	1 cut(s)	343
NlaIII	CATG	5 cut(s)	46, 137, 274, 823, 861
NmuCI	GTSAC	1 cut(s)	237
NruI	TCGCGA	1 cut(s)	380
NspI	RCATGY	1 cut(s)	823
PagI	TCATGA	1 cut(s)	42
PciI	ACATGT	1 cut(s)	819
PciSI	GCTCTTC	1 cut(s)	394
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	551
PinAI	ACCGGT	1 cut(s)	668
PkrI	GCNGC	3 cut(s)	342, 423, 645
PscI	ACATGT	1 cut(s)	819
Psp124BI	GAGCTC	1 cut(s)	406
PsuI	RGATCY	3 cut(s)	127, 161, 581
RruI	TCGCGA	1 cut(s)	380
RsaI	GTAC	2 cut(s)	661, 878
RsaNI	GTAC	2 cut(s)	660, 877
SacI	GAGCTC	1 cut(s)	406
SalI	GTCGAC	1 cut(s)	702
SapI	GCTCTTC	1 cut(s)	394
SaqAI	TTAA	5 cut(s)	447, 468, 530, 665, 795
SatI	GCNGC	3 cut(s)	341, 422, 644
Sau3AI	GATC	8 cut(s)	45, 67, 127, 161, 375, 481, 581, 865
SduI	GDGCHC	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	2 cut(s)	37, 880
SsiI	CCGC	3 cut(s)	644, 683, 732
SspMI	CTAG	5 cut(s)	152, 290, 344, 425, 626
SstI	GAGCTC	1 cut(s)	406
StyI	CCWWGG	2 cut(s)	133, 857
TaaI	ACNGT	6 cut(s)	456, 608, 659, 697, 720, 876
TaqI	TCGA	2 cut(s)	397, 703
TasI	AATT	2 cut(s)	37, 880
TatI	WGTACW	2 cut(s)	659, 876
TauI	GCSGC	1 cut(s)	646
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	5 cut(s)	447, 468, 530, 665, 795
Tru9I	TTAA	5 cut(s)	447, 468, 530, 665, 795
TseFI	GTSAC	1 cut(s)	237
TseI	GCWGC	2 cut(s)	340, 421
Tsp45I	GTSAC	1 cut(s)	237
TspDTI	ATGAA	2 cut(s)	31, 221
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	1 cut(s)	823
XmiI	GTMKAC	1 cut(s)	703
XspI	CTAG	5 cut(s)	152, 290, 344, 425, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.