Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0012829

Physical Location & Seq

Genomic Coordinates Forward (+)

5278289 .. 5280536

Gene Structure 2248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1074800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGACTACCAATGGGATGGTCTTCTTCTCTTCAAATTTCATGCTTCAGAACCCCCATGGTCACGATGACCATCAACCTCCCACTTCTCTCAATCCAATGCTGCCTTCCTGCACACCTCAAGATTTCCATGGAGTGGCATCGTTTCTAGGAAAGCGATCGGTGTCGTTTTCGGGGATTGAGTTGGGAGAAGAAGCTCATGGGGAGGATGACTTATCAGATGATGGGTCACAGGTAGGGGAGAAGAAGAGGAGGCTAAACATGGAGCAAGTGAAGACACTTGAAAAGAACTTTGAGTTGGGGAACAAGCTTGAGCCTGAGAGGAAAATGCAGCTGGCCAGGGCTCTTGGTTTGCAGCCAAGACAGATTGCTATATGGTTTCAGAACAGGAGGGCCAGGTGGAAGACAAAGCAGTTGGAGAAAGATTATGATCTCCTCAAGAGACAGTTTGATGCCATCAAAGCTGACAATGATGCTCTCCAATCTCAGAACCAAAAACTTCAAGCTGAGATAATGGCATTAAAAAACAGAGAGCCAGCAGAATCCATCAACCTCAACAAAGACACAGAGGGATCCTGCAGCAACAGAAGTGAAAACAATTCCGATATAAAACTGGACATTTCGAGAACGCCGGCGATCGACAGCCCTCCATCTTCTCACCATCATCACCACCATCAAAATCCAACCCTTTTTTCGTCTTCAATAATAAGGCCTGCCCAGCTCTTCCAAAACACATCAAGGTCTGAAGCAATGCAATGCCAGAAGATCGATCAGATGGTCAAAGAAGAAAGCCTGACCAACATGTTCTGTGGCATCGACGATCAGTCTGCAGCAGGGTTTTGGCCTTGGTTGGAACAACATCAATTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0034285 GO:0042221 GO:0043565 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

290

Amino Acids

32.95

Weight (kDa)

6.06

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	81 - 134	1e-15	Homeodomain
HALZ	PF02183	136 - 177	3.9e-17	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69780
fragaria_vesca	FvH4_4g31640
malus_domestica	MD13G1074800.v1.1 MD16G1076000.v1.1
prunus_persica	Prupe.1G271400_v2.0.a1 Prupe.1G271400_v2.0.a1
pyrus_communis	pycom13g06660 pycom16g06590
rosa_chinensis	RchiOBHm_Chr4g0440141
rosa_laevigata	RLG00000006202
rosa_multiflora	Rmu_sc0001685.1_g000019
rosa_roxburghii	Rroxscaffold_5G00381070
rosa_rugosa	Rorug04G0324700
rosa_samantha	Rh4AG375500 Rh4BG387900 Rh4CG402500 Rh4DG382100
rosa_wichuraiana	Rw4G032130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	133
AclWI	GGATC	2 cut(s)	564, 577
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	2 cut(s)	29, 762
AfiI	CCNNNNNNNGG	1 cut(s)	133
AflIII	ACRYGT	1 cut(s)	798
AgsI	TTSAA	5 cut(s)	33, 281, 500, 699, 865
AhdI	GACNNNNNGTC	1 cut(s)	820
AjnI	CCWGG	2 cut(s)	335, 392
AjuI	GAANNNNNNNTTGG	6 cut(s)	88, 120, 278, 310, 673, 705
AluBI	AGCT	6 cut(s)	194, 307, 331, 461, 503, 718
AluI	AGCT	6 cut(s)	194, 307, 331, 461, 503, 718
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	2 cut(s)	564, 577
AoxI	GGCC	4 cut(s)	333, 390, 707, 839
ApeKI	GCWGC	5 cut(s)	100, 328, 352, 576, 827
ApoI	RAATTY	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	647, 656
BalI	TGGCCA	1 cut(s)	335
BamHI	GGATCC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	343
BbsI	GAAGAC	4 cut(s)	13, 278, 407, 687
BbvI	GCAGC	5 cut(s)	87, 340, 364, 588, 839
BccI	CCATC	9 cut(s)	10, 78, 215, 461, 551, 655, 666, 678, 766
BcgI	CGANNNNNNTGC	2 cut(s)	806, 840
BciT130I	CCWGG	2 cut(s)	337, 394
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	2 cut(s)	574, 825
BisI	GCNGC	5 cut(s)	101, 329, 353, 577, 828
BlsI	GCNGC	5 cut(s)	102, 330, 354, 578, 829
Bme1390I	CCNGG	2 cut(s)	337, 394
BmeRI	GACNNNNNGTC	1 cut(s)	820
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	1 cut(s)	571
BmrFI	CCNGG	2 cut(s)	337, 394
BmsI	GCATC	4 cut(s)	146, 439, 460, 819
BpiI	GAAGAC	4 cut(s)	13, 278, 407, 687
BpuEI	CTTGAG	3 cut(s)	102, 329, 419
Bsa29I	ATCGAT	1 cut(s)	765
BsaBI	GATNNNNATC	2 cut(s)	69, 426
BsaJI	CCNNGG	4 cut(s)	55, 127, 336, 842
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse118I	RCCGGY	1 cut(s)	628
Bse1I	ACTGG	1 cut(s)	615
Bse3DI	GCAATG	2 cut(s)	753, 758
Bse8I	GATNNNNATC	2 cut(s)	69, 426
BseBI	CCWGG	2 cut(s)	337, 394
BseCI	ATCGAT	1 cut(s)	765
BseDI	CCNNGG	4 cut(s)	55, 127, 336, 842
BseGI	GGATG	2 cut(s)	21, 211
BseJI	GATNNNNATC	2 cut(s)	69, 426
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	2 cut(s)	753, 758
BseMII	CTCAG	3 cut(s)	306, 495, 497
BseNI	ACTGG	1 cut(s)	615
BseRI	GAGGAG	2 cut(s)	262, 422
BseXI	GCAGC	5 cut(s)	87, 340, 364, 588, 839
BseYI	CCCAGC	1 cut(s)	714
BsgI	GTGCAG	1 cut(s)	94
Bsh1285I	CGRYCG	2 cut(s)	158, 636
BshFI	GGCC	4 cut(s)	335, 392, 709, 841
BshVI	ATCGAT	1 cut(s)	765
BsiEI	CGRYCG	2 cut(s)	158, 636
BsiSI	CCGG	1 cut(s)	629
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	433
BsnI	GGCC	4 cut(s)	335, 392, 709, 841
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	7 cut(s)	155, 427, 569, 633, 762, 766, 817
Bsp19I	CCATGG	2 cut(s)	55, 127
BspANI	GGCC	4 cut(s)	335, 392, 709, 841
BspCNI	CTCAG	3 cut(s)	307, 496, 496
BspDI	ATCGAT	1 cut(s)	765
BspLI	GGNNCC	1 cut(s)	571
BspMAI	CTGCAG	2 cut(s)	578, 829
BspPI	GGATC	2 cut(s)	564, 577
BspQI	GCTCTTC	1 cut(s)	725
BsrDI	GCAATG	2 cut(s)	753, 758
BsrFI	RCCGGY	1 cut(s)	628
BsrI	ACTGG	1 cut(s)	615
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	4 cut(s)	55, 127, 336, 842
BssMI	GATC	7 cut(s)	155, 427, 569, 633, 762, 766, 817
BssT1I	CCWWGG	3 cut(s)	55, 127, 842
Bst2UI	CCWGG	2 cut(s)	337, 394
Bst4CI	ACNGT	1 cut(s)	444
Bst6I	CTCTTC	3 cut(s)	34, 239, 725
BstC8I	GCNNGC	4 cut(s)	333, 534, 630, 711
BstDEI	CTNAG	3 cut(s)	315, 483, 504
BstDSI	CCRYGG	2 cut(s)	55, 127
BstF5I	GGATG	2 cut(s)	21, 211
BstKTI	GATC	7 cut(s)	158, 430, 572, 636, 765, 769, 820
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	7 cut(s)	155, 427, 569, 633, 762, 766, 817
BstMCI	CGRYCG	2 cut(s)	158, 636
BstMWI	GCNNNNNNNGC	2 cut(s)	458, 715
BstNI	CCWGG	2 cut(s)	337, 394
BstNSI	RCATGY	1 cut(s)	802
BstSCI	CCNGG	2 cut(s)	335, 392
BstSFI	CTRYAG	2 cut(s)	574, 825
BstV1I	GCAGC	5 cut(s)	87, 340, 364, 588, 839
BstV2I	GAAGAC	4 cut(s)	13, 278, 407, 687
BstX2I	RGATCY	1 cut(s)	569
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	569
Bsu15I	ATCGAT	1 cut(s)	765
BsuRI	GGCC	4 cut(s)	335, 392, 709, 841
BsuTUI	ATCGAT	1 cut(s)	765
BtgI	CCRYGG	2 cut(s)	55, 127
BtsCI	GGATG	2 cut(s)	21, 211
Cac8I	GCNNGC	4 cut(s)	333, 534, 630, 711
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	1 cut(s)	390
ClaI	ATCGAT	1 cut(s)	765
CviAII	CATG	6 cut(s)	40, 56, 128, 197, 259, 799
DdeI	CTNAG	3 cut(s)	315, 483, 504
DpnI	GATC	7 cut(s)	157, 429, 571, 635, 764, 768, 819
DpnII	GATC	7 cut(s)	155, 427, 569, 633, 762, 766, 817
DriI	GACNNNNNGTC	1 cut(s)	820
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	3 cut(s)	34, 239, 725
Eam1105I	GACNNNNNGTC	1 cut(s)	820
EarI	CTCTTC	3 cut(s)	34, 239, 725
Eco130I	CCWWGG	3 cut(s)	55, 127, 842
Eco147I	AGGCCT	1 cut(s)	709
Eco24I	GRGCYC	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	29, 762
EcoRII	CCWGG	2 cut(s)	335, 392
EcoT14I	CCWWGG	3 cut(s)	55, 127, 842
EcoT38I	GRGCYC	1 cut(s)	343
ErhI	CCWWGG	3 cut(s)	55, 127, 842
FaeI	CATG	6 cut(s)	43, 59, 131, 200, 262, 802
FatI	CATG	6 cut(s)	39, 55, 127, 196, 258, 798
Fnu4HI	GCNGC	5 cut(s)	101, 329, 353, 577, 828
FokI	GGATG	2 cut(s)	28, 218
FriOI	GRGCYC	1 cut(s)	343
Fsp4HI	GCNGC	5 cut(s)	101, 329, 353, 577, 828
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	5 cut(s)	101, 329, 353, 577, 828
GsaI	CCCAGC	1 cut(s)	718
HaeIII	GGCC	4 cut(s)	335, 392, 709, 841
HapII	CCGG	1 cut(s)	629
Hin1II	CATG	6 cut(s)	43, 59, 131, 200, 262, 802
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	1 cut(s)	539
HpaII	CCGG	1 cut(s)	629
HphI	GGTGA	2 cut(s)	647, 656
Hpy188I	TCNGA	7 cut(s)	48, 217, 381, 486, 601, 742, 771
Hpy188III	TCNNGA	4 cut(s)	62, 119, 436, 621
Hpy99I	CGWCG	1 cut(s)	818
HpyAV	CCTTC	1 cut(s)	114
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4V	TGCA	6 cut(s)	111, 328, 352, 576, 751, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	458, 715
HpyF3I	CTNAG	3 cut(s)	315, 483, 504
Hsp92II	CATG	6 cut(s)	43, 59, 131, 200, 262, 802
KroI	GCCGGC	1 cut(s)	628
KroNI	GCCGGC	1 cut(s)	630
Kzo9I	GATC	7 cut(s)	155, 427, 569, 633, 762, 766, 817
LguI	GCTCTTC	1 cut(s)	725
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	5 cut(s)	87, 340, 364, 588, 839
LweI	GCATC	4 cut(s)	146, 439, 460, 819
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	2 cut(s)	59, 225
MalI	GATC	7 cut(s)	157, 429, 571, 635, 764, 768, 819
MboI	GATC	7 cut(s)	155, 427, 569, 633, 762, 766, 817
MfeI	CAATTG	1 cut(s)	865
MflI	RGATCY	1 cut(s)	569
MhlI	GDGCHC	1 cut(s)	343
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	4 cut(s)	34, 595, 860, 865
MluNI	TGGCCA	1 cut(s)	335
MmeI	TCCRAC	3 cut(s)	393, 704, 828
Mox20I	TGGCCA	1 cut(s)	335
MreI	CGCCGGCG	1 cut(s)	628
MroNI	GCCGGC	1 cut(s)	628
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	1 cut(s)	629
MspR9I	CCNGG	2 cut(s)	337, 394
MunI	CAATTG	1 cut(s)	865
MvaI	CCWGG	2 cut(s)	337, 394
MwoI	GCNNNNNNNGC	2 cut(s)	458, 715
NaeI	GCCGGC	1 cut(s)	630
NcoI	CCATGG	2 cut(s)	55, 127
NdeII	GATC	7 cut(s)	155, 427, 569, 633, 762, 766, 817
NgoMIV	GCCGGC	1 cut(s)	628
NlaIII	CATG	6 cut(s)	43, 59, 131, 200, 262, 802
NlaIV	GGNNCC	1 cut(s)	571
NmuCI	GTSAC	2 cut(s)	59, 225
NspI	RCATGY	1 cut(s)	802
PceI	AGGCCT	1 cut(s)	709
PciI	ACATGT	1 cut(s)	798
PciSI	GCTCTTC	1 cut(s)	725
PdiI	GCCGGC	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	539
PflMI	CCANNNNNTGG	1 cut(s)	133
PkrI	GCNGC	5 cut(s)	102, 330, 354, 578, 829
Ple19I	CGATCG	2 cut(s)	158, 636
PscI	ACATGT	1 cut(s)	798
Psp6I	CCWGG	2 cut(s)	335, 392
PspFI	CCCAGC	1 cut(s)	714
PspGI	CCWGG	2 cut(s)	335, 392
PspN4I	GGNNCC	1 cut(s)	571
PspPI	GGNCC	1 cut(s)	390
PstI	CTGCAG	2 cut(s)	578, 829
PsuI	RGATCY	1 cut(s)	569
PvuI	CGATCG	2 cut(s)	158, 636
PvuII	CAGCTG	1 cut(s)	331
SapI	GCTCTTC	1 cut(s)	725
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	5 cut(s)	101, 329, 353, 577, 828
Sau3AI	GATC	7 cut(s)	155, 427, 569, 633, 762, 766, 817
Sau96I	GGNCC	1 cut(s)	390
ScrFI	CCNGG	2 cut(s)	337, 394
SduI	GDGCHC	1 cut(s)	343
SfaNI	GCATC	4 cut(s)	146, 439, 460, 819
SfcI	CTRYAG	2 cut(s)	574, 825
SgrAI	CRCCGGYG	1 cut(s)	628
SmlI	CTYRAG	3 cut(s)	117, 308, 434
SmoI	CTYRAG	3 cut(s)	117, 308, 434
Sse9I	AATT	4 cut(s)	34, 595, 860, 865
SseBI	AGGCCT	1 cut(s)	709
SspMI	CTAG	1 cut(s)	146
StuI	AGGCCT	1 cut(s)	709
StyD4I	CCNGG	2 cut(s)	335, 392
StyI	CCWWGG	3 cut(s)	55, 127, 842
TaaI	ACNGT	1 cut(s)	444
TaqI	TCGA	4 cut(s)	620, 636, 765, 813
TasI	AATT	4 cut(s)	34, 595, 860, 865
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TseFI	GTSAC	2 cut(s)	59, 225
TseI	GCWGC	5 cut(s)	100, 328, 352, 576, 827
Tsp45I	GTSAC	2 cut(s)	59, 225
TspDTI	ATGAA	1 cut(s)	28
Van91I	CCANNNNNTGG	1 cut(s)	133
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	1 cut(s)	802
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.