Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012829

Physical Location & Seq

Genomic Coordinates Reverse (-)

27837738 .. 27840056

Gene Structure 2319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G271400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGACGGGCAATGGGATGGCCTTCTTCTCAGCAAATTTCATGCTTCAAACCCCTCACGATCATGACGATCATCAACCTCCCACTTCTCTCAATCCAATGTTGCCTTCCTGCACACCTCAAGATTTTCATGGTGTGGCATCATTTCTAGGAAAGCGATCAGTGTCATTTTCAGGGATTGAATTGGGTGAAGAAGCTCATGGGGAAGATGATTTATCAGATGACGGGTCACAGGCAGGAGAGAAGAAGAGGAGGCTTAACATGGAACAAGTGAAAACACTTGAGAAGAACTTTGAGTTGGGGAATAAGCTTGAGCCTGAGAGAAAAATGCAGTTGGCCAGGGCTCTTGGCTTGCAGCCAAGACAGATTGCTATATGGTTCCAGAACAGGAGGGCAAGGTGGAAGACAAAGCAATTGGAGAAAGACTATGATGTCCTTAAGAGACAGTTTGAAGCAATCAAAGCAGATAATGATGCCCTCCAAGCTCAGAACCAAAAACTTCAGGCAGAGATATTGGCATTGAAAAGTAGAGAACCAGCGGAATCTATCAACCTCAACAAAGAGACAGAGGGCTCTTGCAGCAACAGAAGTGAAAACAACTCAGATATCAAGTTGGACATTTCAAGAACGCCAGCTATCGACAGCCCTCAATCTACTCATCCAAATCCAACCAGCAGAACCCTCTTTTCATCCTCTCTAATAAGGCCGCCTTCTGGAGTGGCACAGCTCTTTCAAAACACATCAAGGCCTGAAGTAATCCAATGCCAGAAGATTGATCAGATGGTCAAAGAAGAAAGCTTGACCAACATGTTCTGTGGCATTGATGATCAGTCTGCAGGGTTTTGGCCATGGTTAGAAACACATCAATTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0034285 GO:0042221 GO:0043565 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

291

Amino Acids

32.77

Weight (kDa)

5.72

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69780
fragaria_vesca	FvH4_4g31640
malus_domestica	MD13G1074800.v1.1 MD16G1076000.v1.1
prunus_persica	Prupe.1G271400_v2.0.a1 Prupe.1G271400_v2.0.a1
pyrus_communis	pycom13g06660 pycom16g06590
rosa_chinensis	RchiOBHm_Chr4g0440141
rosa_laevigata	RLG00000006202
rosa_multiflora	Rmu_sc0001685.1_g000019
rosa_roxburghii	Rroxscaffold_5G00381070
rosa_rugosa	Rorug04G0324700
rosa_samantha	Rh4AG375500 Rh4BG387900 Rh4CG402500 Rh4DG382100
rosa_wichuraiana	Rw4G032130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	428
AciI	CCGC	2 cut(s)	536, 704
AcoI	YGGCCR	2 cut(s)	333, 842
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	2 cut(s)	482, 768
AfiI	CCNNNNNNNGG	1 cut(s)	710
AflII	CTTAAG	1 cut(s)	434
AflIII	ACRYGT	1 cut(s)	804
AgsI	TTSAA	7 cut(s)	47, 179, 449, 520, 621, 731, 868
AjnI	CCWGG	1 cut(s)	335
AjuI	GAANNNNNNNTTGG	4 cut(s)	88, 120, 278, 310
AluBI	AGCT	6 cut(s)	194, 307, 482, 632, 724, 795
AluI	AGCT	6 cut(s)	194, 307, 482, 632, 724, 795
Alw26I	GTCTC	2 cut(s)	433, 554
AoxI	GGCC	5 cut(s)	18, 333, 701, 743, 842
ApeKI	GCWGC	2 cut(s)	352, 576
ApoI	RAATTY	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	197
BalI	TGGCCA	2 cut(s)	335, 844
BanII	GRGCYC	2 cut(s)	343, 572
BbsI	GAAGAC	1 cut(s)	407
BbvI	GCAGC	2 cut(s)	364, 588
BccI	CCATC	2 cut(s)	10, 772
BciT130I	CCWGG	1 cut(s)	337
BclI	TGATCA	2 cut(s)	772, 823
BcoDI	GTCTC	2 cut(s)	433, 554
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	831
BfrI	CTTAAG	1 cut(s)	434
BisI	GCNGC	3 cut(s)	353, 577, 704
BlsI	GCNGC	3 cut(s)	354, 578, 705
Bme1390I	CCNGG	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	377
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	2 cut(s)	146, 460
BpiI	GAAGAC	1 cut(s)	407
BpmI	CTGGAG	1 cut(s)	732
BpuEI	CTTGAG	3 cut(s)	102, 299, 329
BsaJI	CCNNGG	2 cut(s)	336, 845
Bsc4I	CCNNNNNNNGG	1 cut(s)	710
Bse3DI	GCAATG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	337
BseDI	CCNNGG	2 cut(s)	336, 845
BseGI	GGATG	3 cut(s)	21, 655, 686
BseLI	CCNNNNNNNGG	1 cut(s)	710
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	4 cut(s)	42, 306, 497, 612
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	364, 588
BsgI	GTGCAG	1 cut(s)	94
BshFI	GGCC	5 cut(s)	20, 335, 703, 745, 844
BslI	CCNNNNNNNGG	1 cut(s)	710
BsmAI	GTCTC	2 cut(s)	433, 554
BsnI	GGCC	5 cut(s)	20, 335, 703, 745, 844
Bsp1286I	GDGCHC	2 cut(s)	343, 572
Bsp143I	GATC	5 cut(s)	58, 67, 155, 772, 823
Bsp19I	CCATGG	1 cut(s)	845
BspACI	CCGC	2 cut(s)	536, 704
BspANI	GGCC	5 cut(s)	20, 335, 703, 745, 844
BspCNI	CTCAG	4 cut(s)	41, 307, 496, 611
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	377
BspMAI	CTGCAG	1 cut(s)	835
BspTI	CTTAAG	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	336, 845
BssMI	GATC	5 cut(s)	58, 67, 155, 772, 823
BssT1I	CCWWGG	1 cut(s)	845
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	444
Bst6I	CTCTTC	1 cut(s)	239
BstAFI	CTTAAG	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	350, 630
BstDEI	CTNAG	4 cut(s)	28, 315, 483, 598
BstDSI	CCRYGG	1 cut(s)	845
BstF5I	GGATG	3 cut(s)	21, 655, 686
BstKTI	GATC	5 cut(s)	61, 70, 158, 775, 826
BstMAI	GTCTC	2 cut(s)	433, 554
BstMBI	GATC	5 cut(s)	58, 67, 155, 772, 823
BstMWI	GCNNNNNNNGC	3 cut(s)	458, 479, 576
BstNI	CCWGG	1 cut(s)	337
BstNSI	RCATGY	1 cut(s)	808
BstSCI	CCNGG	1 cut(s)	335
BstSFI	CTRYAG	1 cut(s)	831
BstV1I	GCAGC	2 cut(s)	364, 588
BstV2I	GAAGAC	1 cut(s)	407
BsuRI	GGCC	5 cut(s)	20, 335, 703, 745, 844
BtgI	CCRYGG	1 cut(s)	845
BtsCI	GGATG	3 cut(s)	21, 655, 686
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	350, 630
CciI	TCATGA	1 cut(s)	61
CviAII	CATG	7 cut(s)	40, 62, 128, 197, 259, 805, 846
DdeI	CTNAG	4 cut(s)	28, 315, 483, 598
DpnI	GATC	5 cut(s)	60, 69, 157, 774, 825
DpnII	GATC	5 cut(s)	58, 67, 155, 772, 823
DrdI	GACNNNNNNGTC	1 cut(s)	428
DseDI	GACNNNNNNGTC	1 cut(s)	428
EaeI	YGGCCR	2 cut(s)	333, 842
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	845
Eco147I	AGGCCT	1 cut(s)	745
Eco24I	GRGCYC	2 cut(s)	343, 572
Eco32I	GATATC	1 cut(s)	604
Eco57I	CTGAAG	2 cut(s)	482, 768
EcoRII	CCWGG	1 cut(s)	335
EcoRV	GATATC	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	845
EcoT38I	GRGCYC	2 cut(s)	343, 572
ErhI	CCWWGG	1 cut(s)	845
FaeI	CATG	7 cut(s)	43, 65, 131, 200, 262, 808, 849
FalI	AAGNNNNNCTT	2 cut(s)	691, 723
FatI	CATG	7 cut(s)	39, 61, 127, 196, 258, 804, 845
FbaI	TGATCA	2 cut(s)	772, 823
Fnu4HI	GCNGC	3 cut(s)	353, 577, 704
FokI	GGATG	3 cut(s)	28, 642, 673
FriOI	GRGCYC	2 cut(s)	343, 572
Fsp4HI	GCNGC	3 cut(s)	353, 577, 704
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	3 cut(s)	353, 577, 704
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	5 cut(s)	20, 335, 703, 745, 844
Hin1II	CATG	7 cut(s)	43, 65, 131, 200, 262, 808, 849
HindIII	AAGCTT	2 cut(s)	305, 793
HinfI	GANTC	1 cut(s)	539
HphI	GGTGA	1 cut(s)	197
Hpy188I	TCNGA	4 cut(s)	217, 486, 601, 777
Hpy188III	TCNNGA	6 cut(s)	56, 62, 119, 379, 621, 711
HpyAV	CCTTC	3 cut(s)	31, 114, 717
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4V	TGCA	5 cut(s)	111, 328, 352, 576, 833
HpyF10VI	GCNNNNNNNGC	3 cut(s)	458, 479, 576
HpyF3I	CTNAG	4 cut(s)	28, 315, 483, 598
Hsp92II	CATG	7 cut(s)	43, 65, 131, 200, 262, 808, 849
Ksp22I	TGATCA	2 cut(s)	772, 823
Kzo9I	GATC	5 cut(s)	58, 67, 155, 772, 823
Lsp1109I	GCAGC	2 cut(s)	364, 588
LweI	GCATC	2 cut(s)	146, 460
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	5 cut(s)	60, 69, 157, 774, 825
MboI	GATC	5 cut(s)	58, 67, 155, 772, 823
MboII	GAAGA	9 cut(s)	16, 200, 215, 253, 256, 295, 412, 778, 800
MfeI	CAATTG	2 cut(s)	410, 868
MhlI	GDGCHC	2 cut(s)	343, 572
MlsI	TGGCCA	2 cut(s)	335, 844
MluCI	AATT	5 cut(s)	34, 179, 410, 863, 868
MluNI	TGGCCA	2 cut(s)	335, 844
MmeI	TCCRAC	2 cut(s)	591, 689
Mox20I	TGGCCA	2 cut(s)	335, 844
MscI	TGGCCA	2 cut(s)	335, 844
MseI	TTAA	2 cut(s)	255, 435
MslI	CAYNNNNRTG	1 cut(s)	60
Msp20I	TGGCCA	2 cut(s)	335, 844
MspA1I	CMGCKG	1 cut(s)	536
MspCI	CTTAAG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	337
MunI	CAATTG	2 cut(s)	410, 868
MvaI	CCWGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	3 cut(s)	458, 479, 576
NcoI	CCATGG	1 cut(s)	845
NdeII	GATC	5 cut(s)	58, 67, 155, 772, 823
NlaIII	CATG	7 cut(s)	43, 65, 131, 200, 262, 808, 849
NlaIV	GGNNCC	1 cut(s)	377
NmuCI	GTSAC	1 cut(s)	225
NspI	RCATGY	1 cut(s)	808
PagI	TCATGA	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	745
PciI	ACATGT	1 cut(s)	804
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	3 cut(s)	354, 578, 705
PscI	ACATGT	1 cut(s)	804
Psp6I	CCWGG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	377
PstI	CTGCAG	1 cut(s)	835
RseI	CAYNNNNRTG	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	255, 435
SatI	GCNGC	3 cut(s)	353, 577, 704
Sau3AI	GATC	5 cut(s)	58, 67, 155, 772, 823
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	2 cut(s)	343, 572
SfaNI	GCATC	2 cut(s)	146, 460
SfcI	CTRYAG	1 cut(s)	831
SmiMI	CAYNNNNRTG	1 cut(s)	60
SmlI	CTYRAG	4 cut(s)	117, 278, 308, 434
SmoI	CTYRAG	4 cut(s)	117, 278, 308, 434
Sse9I	AATT	5 cut(s)	34, 179, 410, 863, 868
SseBI	AGGCCT	1 cut(s)	745
SsiI	CCGC	2 cut(s)	536, 704
SspMI	CTAG	1 cut(s)	146
StuI	AGGCCT	1 cut(s)	745
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	845
TaaI	ACNGT	1 cut(s)	444
TaqI	TCGA	1 cut(s)	636
TasI	AATT	5 cut(s)	34, 179, 410, 863, 868
TauI	GCSGC	1 cut(s)	706
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	2 cut(s)	255, 435
Tru9I	TTAA	2 cut(s)	255, 435
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	2 cut(s)	352, 576
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	3 cut(s)	28, 116, 675
TspRI	CASTG	1 cut(s)	165
Vha464I	CTTAAG	1 cut(s)	434
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	1 cut(s)	808
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.