Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017210

Physical Location & Seq

Genomic Coordinates Reverse (-)

27755454 .. 27757463

Gene Structure 2010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G73820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAGGTTCCGGTACGCAATGGTTTGTTCGTCGAATCAGAACCGGAGCATGGAAGCTCACGCTCTTCTTAAGAGACAAGGACTCGACGTTGCTTCGTACGGGACTGGGTCACATGTAAAACTACCTGGACCATCTCTGAGAGAGCCAAACGTTTACGACTTTGGAACTCCTTACAAGCAGATGTTCGATGAGCTCAGGCGCAAAGATCCTGAACTATACAAGCGGAATGGTATTTTGCAGATGATTAAGAGGAATTTATCCGTGAAACTTGCTCCTCAAAGATGGCAAGATAATGCTGGTGATGGTGTGTTTGATGTGGTTATGACTTTTGAAGAAAAGGTTTTCGATTCAGTCCTTGAAGATCTCAACAACAGAGAACAATCACTTACGAAAACAATACTTGTGATGAACTTGGAGGTTAAAGATAACCACGAAGAAGCAGCTATAGGTGGCCGACTTGCCTTGGAACTCTGTCAAGAGATTGAAGGGAATGAAACATGGGAAGATACGATCGATGACATTGTTGCGGGTTTTGAAAAACAACACAGGCGGAAACTGGTCTACAGCATCTCATTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006464 GO:0006470 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0031123 GO:0031124 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Ssu72

Protein Analysis

193

Amino Acids

22.29

Weight (kDa)

5.65

Isoelectric Point (pI)

53.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ssu72	PF04722	4 - 193	8.7e-81	Ssu72-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73820 AT1G73820
fragaria_vesca	FvH4_5g17750 FvH4_5g17750
malus_domestica	MD14G1240000.v1.1
prunus_persica	Prupe.5G237600_v2.0.a1
pyrus_communis	pycom14g20160
rosa_chinensis	RchiOBHm_Chr7g0177871
rosa_laevigata	RLG00000005495
rosa_roxburghii	Rroxscaffold_3G00275480
rosa_rugosa	Rorug06G0410600
rosa_samantha	Rh7DG009900
rosa_wichuraiana	Rw7G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	561
AciI	CCGC	3 cut(s)	223, 527, 550
AclI	AACGTT	1 cut(s)	150
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	253
AfaI	GTAC	2 cut(s)	14, 98
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflII	CTTAAG	1 cut(s)	68
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	332, 359, 485, 536
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	3 cut(s)	56, 193, 443
AluI	AGCT	3 cut(s)	56, 193, 443
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	3 cut(s)	139, 276, 296
BciT130I	CCWGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	67
BfmI	CTRYAG	2 cut(s)	444, 562
BfrI	CTTAAG	1 cut(s)	68
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	8
BmrFI	CCNGG	1 cut(s)	126
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	576
BmuI	ACTGGG	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	194
Bsa29I	ATCGAT	1 cut(s)	513
BsaJI	CCNNGG	1 cut(s)	462
BsaWI	WCCGGW	2 cut(s)	9, 42
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	109, 561
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	126
BseCI	ATCGAT	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	2 cut(s)	128, 208
BseNI	ACTGG	2 cut(s)	109, 561
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	452
Bsh1285I	CGRYCG	1 cut(s)	513
BshFI	GGCC	1 cut(s)	453
BshVI	ATCGAT	1 cut(s)	513
BsiEI	CGRYCG	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	10, 43
BsiWI	CGTACG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	453
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	3 cut(s)	205, 361, 510
BspACI	CCGC	3 cut(s)	223, 527, 550
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	2 cut(s)	129, 207
BspDI	ATCGAT	1 cut(s)	513
BspLI	GGNNCC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	200
BspQI	GCTCTTC	1 cut(s)	69
BspTI	CTTAAG	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	2 cut(s)	109, 561
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	3 cut(s)	205, 361, 510
BssT1I	CCWWGG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	69
BstAFI	CTTAAG	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	137, 194
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	3 cut(s)	208, 364, 513
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	3 cut(s)	205, 361, 510
BstMCI	CGRYCG	1 cut(s)	513
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	124
BstSFI	CTRYAG	2 cut(s)	444, 562
BstV1I	GCAGC	1 cut(s)	452
BstX2I	RGATCY	2 cut(s)	205, 361
BstYI	RGATCY	2 cut(s)	205, 361
Bsu15I	ATCGAT	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	453
BsuTUI	ATCGAT	1 cut(s)	513
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	128
ClaI	ATCGAT	1 cut(s)	513
Csp6I	GTAC	2 cut(s)	13, 97
CviAII	CATG	3 cut(s)	49, 113, 498
CviJI	RGCY	5 cut(s)	56, 145, 193, 443, 453
CviKI_1	RGCY	5 cut(s)	56, 145, 193, 443, 453
CviQI	GTAC	2 cut(s)	13, 97
DdeI	CTNAG	2 cut(s)	137, 194
DpnI	GATC	3 cut(s)	207, 363, 512
DpnII	GATC	3 cut(s)	205, 361, 510
EaeI	YGGCCR	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	565
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	462
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	128
Eco53kI	GAGCTC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	3 cut(s)	52, 116, 501
FaiI	YATR	6 cut(s)	50, 114, 217, 323, 446, 499
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	3 cut(s)	48, 112, 497
FauI	CCCGC	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	1 cut(s)	441
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	441
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	453
HapII	CCGG	2 cut(s)	10, 43
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	3 cut(s)	52, 116, 501
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	3 cut(s)	34, 81, 347
HpaII	CCGG	2 cut(s)	10, 43
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	154, 562
Hpy188I	TCNGA	2 cut(s)	39, 138
Hpy188III	TCNNGA	2 cut(s)	209, 476
Hpy8I	GTNNAC	2 cut(s)	154, 562
Hpy99I	CGWCG	2 cut(s)	34, 89
HpyAV	CCTTC	1 cut(s)	479
HpyCH4IV	ACGT	2 cut(s)	87, 150
HpyCH4V	TGCA	1 cut(s)	238
HpyF3I	CTNAG	2 cut(s)	137, 194
HpySE526I	ACGT	2 cut(s)	87, 150
Hsp92II	CATG	3 cut(s)	52, 116, 501
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	205, 361, 510
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	45, 277
Lsp1109I	GCAGC	1 cut(s)	452
LweI	GCATC	1 cut(s)	576
MaeII	ACGT	2 cut(s)	87, 150
MaeIII	GTNAC	1 cut(s)	108
MalI	GATC	3 cut(s)	207, 363, 512
MboI	GATC	3 cut(s)	205, 361, 510
MboII	GAAGA	5 cut(s)	56, 344, 371, 446, 515
MflI	RGATCY	2 cut(s)	205, 361
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	1 cut(s)	253
MlyI	GAGTC	1 cut(s)	75
MnlI	CCTC	3 cut(s)	243, 285, 409
MseI	TTAA	3 cut(s)	69, 246, 420
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	2 cut(s)	10, 43
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
NdeII	GATC	3 cut(s)	205, 361, 510
NlaIII	CATG	3 cut(s)	52, 116, 501
NlaIV	GGNNCC	1 cut(s)	8
NmuCI	GTSAC	1 cut(s)	108
NspI	RCATGY	1 cut(s)	116
PciI	ACATGT	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	34, 347
Pfl23II	CGTACG	1 cut(s)	96
PflFI	GACNNNGTC	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	442
Ple19I	CGATCG	1 cut(s)	513
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PscI	ACATGT	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	195
Psp1406I	AACGTT	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	8
PspPI	GGNCC	1 cut(s)	128
PsuI	RGATCY	2 cut(s)	205, 361
PsyI	GACNNNGTC	1 cut(s)	106
PvuI	CGATCG	1 cut(s)	513
RsaI	GTAC	2 cut(s)	14, 98
RsaNI	GTAC	2 cut(s)	13, 97
SacI	GAGCTC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	69, 246, 420
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	3 cut(s)	205, 361, 510
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	195
SfaNI	GCATC	1 cut(s)	576
SfcI	CTRYAG	2 cut(s)	444, 562
SinI	GGWCC	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	253
SsiI	CCGC	3 cut(s)	223, 527, 550
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	1 cut(s)	462
TaiI	ACGT	2 cut(s)	90, 153
TaqI	TCGA	5 cut(s)	32, 84, 186, 345, 513
TasI	AATT	1 cut(s)	253
TfiI	GAWTC	2 cut(s)	34, 347
Tru1I	TTAA	3 cut(s)	69, 246, 420
Tru9I	TTAA	3 cut(s)	69, 246, 420
TseFI	GTSAC	1 cut(s)	108
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	108
TspDTI	ATGAA	2 cut(s)	422, 507
TspGWI	ACGGA	1 cut(s)	250
Tth111I	GACNNNGTC	1 cut(s)	106
Vha464I	CTTAAG	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.