Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0017210

Physical Location & Seq

Genomic Coordinates Reverse (-)

31895653 .. 31898016

Gene Structure 2364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1240000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAAGTTCCGGTACGCCATGGTGTGTTCGTCGAACCAGAACCGGAGCATGGAGGCTCACTCGCTCCTCAAGCGGCAGGGCTTCGACGTCGCGTCGTACGGCACCGGAGCCCACGTCAAGCTCCCTGGTCCCTCTCTCAGAGAACCCAACGTTTACGACTTTGGCACACCTTACAAGCAGATGTTCGACGATCTGCGGCGAAAAGACCCCGAACTGTATAAGCGTAATGGCATCTTGCCTATGCTTAAAAGAAACTTGGGAGTCAAACTGGCACCTCAGCGATGGCAGGACAATGCTGCCGACGGTTCCTTTGATGTGGTGTTAACATTCGAAGAAAAGGTTTTTGACATGGTTATTGAAGATCTCAACAACCGGGACCATGTTCTTAGGAAATGTGTGCTGATAATCAACTTGGAGGTGAAAGATAACCACGAGGAGGCGGCTGTAGGAGCTCGTCTTGCTTTAGATCTTTGCCAAGAGATCGAAGCAGCCGAATCGTGGGAGGAATCAATTGATGATATTGTATCTGGTTTTGAGAAACAGCAGCGACGGAAGTTAGTGTATAGCATCTCATTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006464 GO:0006470 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0031123 GO:0031124 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Ssu72

Protein Analysis

194

Amino Acids

22.25

Weight (kDa)

5.86

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ssu72	PF04722	4 - 193	6.4e-81	Ssu72-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0017210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73820 AT1G73820
fragaria_vesca	FvH4_5g17750 FvH4_5g17750
malus_domestica	MD14G1240000.v1.1
prunus_persica	Prupe.5G237600_v2.0.a1
pyrus_communis	pycom14g20160
rosa_chinensis	RchiOBHm_Chr7g0177871
rosa_laevigata	RLG00000005495
rosa_roxburghii	Rroxscaffold_3G00275480
rosa_rugosa	Rorug06G0410600
rosa_samantha	Rh7DG009900
rosa_wichuraiana	Rw7G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccB1I	GGYRCC	2 cut(s)	101, 271
AccII	CGCG	1 cut(s)	92
AciI	CCGC	3 cut(s)	73, 196, 440
AclI	AACGTT	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	2 cut(s)	14, 98
AfiI	CCNNNNNNNGG	3 cut(s)	49, 436, 498
AgsI	TTSAA	1 cut(s)	359
AhdI	GACNNNNNGTC	1 cut(s)	91
AjiI	CACGTC	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	2 cut(s)	121, 452
AluI	AGCT	2 cut(s)	121, 452
Alw21I	GWGCWC	1 cut(s)	454
ApeKI	GCWGC	3 cut(s)	296, 488, 544
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AspS9I	GGNCC	2 cut(s)	128, 376
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	430
AsuII	TTCGAA	1 cut(s)	330
AvaII	GGWCC	2 cut(s)	128, 376
BanI	GGYRCC	2 cut(s)	101, 271
BanII	GRGCYC	2 cut(s)	112, 454
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	454
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	3 cut(s)	283, 500, 556
BccI	CCATC	1 cut(s)	276
BceAI	ACGGC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	477, 511
BciT130I	CCWGG	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	444
BglII	AGATCT	2 cut(s)	361, 466
BisI	GCNGC	6 cut(s)	74, 197, 297, 441, 489, 545
BlsI	GCNGC	6 cut(s)	75, 198, 298, 442, 490, 546
Bme1390I	CCNGG	2 cut(s)	126, 374
Bme18I	GGWCC	2 cut(s)	128, 376
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	128, 376
BmiI	GGNNCC	6 cut(s)	103, 109, 130, 273, 307, 377
BmrFI	CCNGG	2 cut(s)	126, 374
BmsI	GCATC	2 cut(s)	240, 576
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	18, 124
BsaWI	WCCGGW	3 cut(s)	9, 42, 104
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 436, 498
Bse1I	ACTGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	18, 124
BseLI	CCNNNNNNNGG	3 cut(s)	49, 436, 498
BseMII	CTCAG	2 cut(s)	151, 290
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	2 cut(s)	56, 449
BseXI	GCAGC	3 cut(s)	283, 500, 556
Bsh1236I	CGCG	1 cut(s)	92
BshNI	GGYRCC	2 cut(s)	101, 271
BsiHKAI	GWGCWC	1 cut(s)	454
BsiSI	CCGG	4 cut(s)	10, 43, 105, 373
BsiWI	CGTACG	1 cut(s)	96
BslFI	GGGAC	2 cut(s)	114, 389
BslI	CCNNNNNNNGG	3 cut(s)	49, 436, 498
BsmFI	GGGAC	2 cut(s)	114, 389
Bsp119I	TTCGAA	1 cut(s)	330
Bsp1286I	GDGCHC	2 cut(s)	112, 454
Bsp143I	GATC	4 cut(s)	190, 361, 466, 480
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	3 cut(s)	73, 196, 440
BspCNI	CTCAG	2 cut(s)	150, 289
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	6 cut(s)	103, 109, 130, 273, 307, 377
BspT104I	TTCGAA	1 cut(s)	330
BspT107I	GGYRCC	2 cut(s)	101, 271
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	18, 124
BssMI	GATC	4 cut(s)	190, 361, 466, 480
BssNI	GRCGYC	1 cut(s)	87
BssSI	CACGAG	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	216, 305
BstACI	GRCGYC	1 cut(s)	87
BstBI	TTCGAA	1 cut(s)	330
BstDEI	CTNAG	3 cut(s)	137, 276, 386
BstDSI	CCRYGG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	92
BstKTI	GATC	4 cut(s)	193, 364, 469, 483
BstMBI	GATC	4 cut(s)	190, 361, 466, 480
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 449, 458
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	2 cut(s)	124, 372
BstSFI	CTRYAG	1 cut(s)	444
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	3 cut(s)	283, 500, 556
BstX2I	RGATCY	2 cut(s)	361, 466
BstYI	RGATCY	2 cut(s)	361, 466
BtgI	CCRYGG	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	295
BtrI	CACGTC	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	128, 376
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	13, 97
CviAII	CATG	4 cut(s)	19, 49, 349, 380
CviJI	RGCY	7 cut(s)	56, 81, 110, 121, 443, 452, 491
CviKI_1	RGCY	7 cut(s)	56, 81, 110, 121, 443, 452, 491
CviQI	GTAC	2 cut(s)	13, 97
DdeI	CTNAG	3 cut(s)	137, 276, 386
DpnI	GATC	4 cut(s)	192, 363, 468, 482
DpnII	GATC	4 cut(s)	190, 361, 466, 480
DriI	GACNNNNNGTC	1 cut(s)	91
Eam1105I	GACNNNNNGTC	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	452
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	2 cut(s)	112, 454
Eco47I	GGWCC	2 cut(s)	128, 376
Eco53kI	GAGCTC	1 cut(s)	452
EcoICRI	GAGCTC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	2 cut(s)	112, 454
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	4 cut(s)	22, 52, 352, 383
FaiI	YATR	7 cut(s)	20, 50, 219, 242, 350, 381, 564
FaqI	GGGAC	2 cut(s)	114, 389
FatI	CATG	4 cut(s)	18, 48, 348, 379
Fnu4HI	GCNGC	6 cut(s)	74, 197, 297, 441, 489, 545
FriOI	GRGCYC	2 cut(s)	112, 454
Fsp4HI	GCNGC	6 cut(s)	74, 197, 297, 441, 489, 545
GluI	GCNGC	6 cut(s)	74, 197, 297, 441, 489, 545
HapII	CCGG	4 cut(s)	10, 43, 105, 373
HgaI	GACGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	22, 52, 352, 383
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HinfI	GANTC	3 cut(s)	261, 494, 506
HpaI	GTTAAC	1 cut(s)	324
HpaII	CCGG	4 cut(s)	10, 43, 105, 373
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	2 cut(s)	154, 324
Hpy188I	TCNGA	1 cut(s)	140
Hpy8I	GTNNAC	2 cut(s)	154, 324
Hpy99I	CGWCG	7 cut(s)	34, 89, 92, 97, 191, 305, 552
HpyCH4III	ACNGT	2 cut(s)	216, 305
HpyCH4IV	ACGT	3 cut(s)	87, 114, 150
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 449, 458
HpyF3I	CTNAG	3 cut(s)	137, 276, 386
HpySE526I	ACGT	3 cut(s)	87, 114, 150
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	22, 52, 352, 383
KspAI	GTTAAC	1 cut(s)	324
Kzo9I	GATC	4 cut(s)	190, 361, 466, 480
LmnI	GCTCC	5 cut(s)	45, 69, 107, 126, 449
Lsp1109I	GCAGC	3 cut(s)	283, 500, 556
LweI	GCATC	2 cut(s)	240, 576
MaeII	ACGT	3 cut(s)	87, 114, 150
MalI	GATC	4 cut(s)	192, 363, 468, 482
MboI	GATC	4 cut(s)	190, 361, 466, 480
MboII	GAAGA	2 cut(s)	344, 371
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	2 cut(s)	361, 466
MhlI	GDGCHC	2 cut(s)	112, 454
MluCI	AATT	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	270
MnlI	CCTC	8 cut(s)	46, 77, 142, 285, 409, 427, 430, 496
MseI	TTAA	2 cut(s)	246, 323
MspI	CCGG	4 cut(s)	10, 43, 105, 373
MspR9I	CCNGG	2 cut(s)	126, 374
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	70, 449, 458
NciI	CCSGG	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	4 cut(s)	190, 361, 466, 480
NlaIII	CATG	4 cut(s)	22, 52, 352, 383
NlaIV	GGNNCC	6 cut(s)	103, 109, 130, 273, 307, 377
NspV	TTCGAA	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PfeI	GAWTC	2 cut(s)	494, 506
Pfl23II	CGTACG	1 cut(s)	96
PkrI	GCNGC	6 cut(s)	75, 198, 298, 442, 490, 546
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
Psp124BI	GAGCTC	1 cut(s)	454
Psp1406I	AACGTT	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	6 cut(s)	103, 109, 130, 273, 307, 377
PspPI	GGNCC	2 cut(s)	128, 376
PsuI	RGATCY	2 cut(s)	361, 466
RsaI	GTAC	2 cut(s)	14, 98
RsaNI	GTAC	2 cut(s)	13, 97
SacI	GAGCTC	1 cut(s)	454
SaqAI	TTAA	2 cut(s)	246, 323
SatI	GCNGC	6 cut(s)	74, 197, 297, 441, 489, 545
Sau3AI	GATC	4 cut(s)	190, 361, 466, 480
Sau96I	GGNCC	2 cut(s)	128, 376
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	2 cut(s)	126, 374
SduI	GDGCHC	2 cut(s)	112, 454
SetI	ASST	9 cut(s)	90, 117, 123, 153, 172, 277, 342, 420, 454
SfaNI	GCATC	2 cut(s)	240, 576
SfcI	CTRYAG	1 cut(s)	444
SfuI	TTCGAA	1 cut(s)	330
SinI	GGWCC	2 cut(s)	128, 376
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	510
SsiI	CCGC	3 cut(s)	73, 196, 440
SstI	GAGCTC	1 cut(s)	454
StyD4I	CCNGG	2 cut(s)	124, 372
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	216, 305
TaiI	ACGT	3 cut(s)	90, 117, 153
TaqI	TCGA	5 cut(s)	32, 84, 186, 330, 483
TasI	AATT	1 cut(s)	510
TauI	GCSGC	3 cut(s)	76, 199, 443
TfiI	GAWTC	2 cut(s)	494, 506
Tru1I	TTAA	2 cut(s)	246, 323
Tru9I	TTAA	2 cut(s)	246, 323
TseI	GCWGC	3 cut(s)	296, 488, 544
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	565
VpaK11BI	GGWCC	2 cut(s)	128, 376
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.