Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0017210

Physical Location & Seq

Genomic Coordinates Reverse (-)

10164249 .. 10166767

Gene Structure 2519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAAGTTCCGGTACGCCATGGTGTGCTCCTCCAACCAGAACCGGAGCATGGAGGCTCACGCGCTCCTCAAGCGTCAAGGCTTCGACGTCTCGTCGTACGGCACTGGATCCCACGTTAAGCTCCCTGGACCTTCCCTCAGAGAACCCAACGTCTACGAGTTTGGAACTCCTTATAAGCAGATGCTTGACGAGCTGAGGCGAAAAGACCCTGAATTGTACAAGCGGAATGGCATTTTGCCTATGCTCAAGAGAAACGTGGCAGTTAAACTGGCACCTCAGCGGTGGCAAGACAATGCCGCTGATGGTTCCTTTGACGTGGTGATTACTTTTGAAGAAAAGGTTTTTGATATGGTGGTTGAAGATCTTCACAATCGGGACCAAGTGCTTAAGAAGTGTGTACTGATAATCAACTTGGAAGTAAAAGATAACCACGAGGAAGCAGCTGCGGGAGCTCGTCTTGCTTTAGATCTTTGCCAAGAGCTTGATGCGACTGAGTCATGGGAGGATTCAATTGACGACATTCTGAATGGTTTTGAGAAACAACATCGGCGGAAGTTACTGTATAGCATCTCATATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006464 GO:0006470 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0031123 GO:0031124 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Ssu72

Protein Analysis

194

Amino Acids

22.29

Weight (kDa)

5.98

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ssu72	PF04722	4 - 193	2.9e-82	Ssu72-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73820 AT1G73820
fragaria_vesca	FvH4_5g17750 FvH4_5g17750
malus_domestica	MD14G1240000.v1.1
prunus_persica	Prupe.5G237600_v2.0.a1
pyrus_communis	pycom14g20160
rosa_chinensis	RchiOBHm_Chr7g0177871
rosa_laevigata	RLG00000005495
rosa_roxburghii	Rroxscaffold_3G00275480
rosa_rugosa	Rorug06G0410600
rosa_samantha	Rh7DG009900
rosa_wichuraiana	Rw7G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
AatII	GACGTC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	271
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	62
AciI	CCGC	5 cut(s)	223, 280, 297, 446, 550
AclWI	GGATC	2 cut(s)	102, 115
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	4 cut(s)	14, 98, 218, 399
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	3 cut(s)	332, 359, 510
AhdI	GACNNNNNGTC	1 cut(s)	91
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	5 cut(s)	121, 193, 443, 452, 481
AluI	AGCT	5 cut(s)	121, 193, 443, 452, 481
Alw21I	GWGCWC	2 cut(s)	29, 454
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	2 cut(s)	102, 115
ApeKI	GCWGC	2 cut(s)	440, 443
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	128, 376
AsuHPI	GGTGA	1 cut(s)	331
AvaII	GGWCC	2 cut(s)	128, 376
BamHI	GGATCC	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	454
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	431
Bbv12I	GWGCWC	2 cut(s)	29, 454
BbvCI	CCTCAGC	2 cut(s)	194, 276
BbvI	GCAGC	2 cut(s)	430, 452
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	94
BfrI	CTTAAG	1 cut(s)	386
BglII	AGATCT	2 cut(s)	361, 466
BisI	GCNGC	3 cut(s)	297, 441, 444
BlsI	GCNGC	3 cut(s)	298, 442, 445
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	2 cut(s)	128, 376
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	2 cut(s)	128, 376
BmiI	GGNNCC	4 cut(s)	109, 273, 307, 377
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	3 cut(s)	171, 475, 576
Bpu10I	CCTNAGC	2 cut(s)	194, 276
BpuEI	CTTGAG	2 cut(s)	53, 230
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	18, 124
BsaWI	WCCGGW	2 cut(s)	9, 42
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	109, 273
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	18, 124
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	4 cut(s)	151, 185, 290, 483
BseNI	ACTGG	2 cut(s)	109, 273
BseRI	GAGGAG	2 cut(s)	19, 56
BseXI	GCAGC	2 cut(s)	430, 452
Bsh1236I	CGCG	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	271
BsiHKAI	GWGCWC	2 cut(s)	29, 454
BsiSI	CCGG	2 cut(s)	10, 43
BsiWI	CGTACG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	389
Bsp1286I	GDGCHC	2 cut(s)	29, 454
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	107, 361, 466
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	5 cut(s)	223, 280, 297, 446, 550
BspCNI	CTCAG	4 cut(s)	150, 186, 289, 484
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	4 cut(s)	109, 273, 307, 377
BspPI	GGATC	2 cut(s)	102, 115
BspT107I	GGYRCC	1 cut(s)	271
BspTI	CTTAAG	1 cut(s)	386
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	109, 273
BssECI	CCNNGG	2 cut(s)	18, 124
BssMI	GATC	3 cut(s)	107, 361, 466
BssNI	GRCGYC	1 cut(s)	87
BssSI	CACGAG	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	561
BstACI	GRCGYC	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	386
BstAUI	TGTACA	1 cut(s)	216
BstDEI	CTNAG	4 cut(s)	137, 194, 276, 492
BstDSI	CCRYGG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	3 cut(s)	110, 364, 469
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	3 cut(s)	107, 361, 466
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 190, 449, 458
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	430, 452
BstX2I	RGATCY	3 cut(s)	107, 361, 466
BstYI	RGATCY	3 cut(s)	107, 361, 466
BtgI	CCRYGG	1 cut(s)	18
BtrI	CACGTC	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	102
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	128, 376
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	4 cut(s)	13, 97, 217, 398
CviAII	CATG	3 cut(s)	19, 49, 498
CviJI	RGCY	7 cut(s)	56, 81, 121, 193, 443, 452, 481
CviKI_1	RGCY	7 cut(s)	56, 81, 121, 193, 443, 452, 481
CviQI	GTAC	4 cut(s)	13, 97, 217, 398
DdeI	CTNAG	4 cut(s)	137, 194, 276, 492
DpnI	GATC	3 cut(s)	109, 363, 468
DpnII	GATC	3 cut(s)	107, 361, 466
DriI	GACNNNNNGTC	1 cut(s)	91
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EciI	GGCGGA	1 cut(s)	565
Ecl136II	GAGCTC	1 cut(s)	452
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	454
Eco47I	GGWCC	2 cut(s)	128, 376
Eco53kI	GAGCTC	1 cut(s)	452
EcoICRI	GAGCTC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	3 cut(s)	22, 52, 501
FaiI	YATR	8 cut(s)	20, 50, 174, 242, 350, 499, 564, 574
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	3 cut(s)	18, 48, 497
FauI	CCCGC	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	297, 441, 444
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	3 cut(s)	297, 441, 444
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	3 cut(s)	297, 441, 444
HapII	CCGG	2 cut(s)	10, 43
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	3 cut(s)	22, 52, 501
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	2 cut(s)	494, 506
HpaII	CCGG	2 cut(s)	10, 43
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	2 cut(s)	154, 398
Hpy188I	TCNGA	2 cut(s)	140, 525
Hpy188III	TCNNGA	2 cut(s)	247, 374
Hpy8I	GTNNAC	2 cut(s)	154, 398
Hpy99I	CGWCG	2 cut(s)	89, 97
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4IV	ACGT	5 cut(s)	87, 114, 150, 255, 315
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 190, 449, 458
HpyF3I	CTNAG	4 cut(s)	137, 194, 276, 492
HpySE526I	ACGT	5 cut(s)	87, 114, 150, 255, 315
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	22, 52, 501
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	3 cut(s)	107, 361, 466
LmnI	GCTCC	5 cut(s)	32, 45, 69, 126, 449
LpnPI	CCDG	8 cut(s)	23, 50, 56, 90, 111, 138, 222, 254
Lsp1109I	GCAGC	2 cut(s)	430, 452
LweI	GCATC	3 cut(s)	171, 475, 576
MaeII	ACGT	5 cut(s)	87, 114, 150, 255, 315
MaeIII	GTNAC	1 cut(s)	555
MalI	GATC	3 cut(s)	109, 363, 468
MboI	GATC	3 cut(s)	107, 361, 466
MboII	GAAGA	3 cut(s)	344, 356, 371
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	3 cut(s)	107, 361, 466
MhlI	GDGCHC	2 cut(s)	29, 454
MluCI	AATT	2 cut(s)	212, 510
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	8 cut(s)	40, 46, 77, 146, 189, 285, 427, 496
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	3 cut(s)	117, 264, 387
MspA1I	CMGCKG	3 cut(s)	280, 299, 443
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	2 cut(s)	10, 43
MspR9I	CCNGG	1 cut(s)	126
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	4 cut(s)	70, 190, 449, 458
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	3 cut(s)	107, 361, 466
NlaIII	CATG	3 cut(s)	22, 52, 501
NlaIV	GGNNCC	4 cut(s)	109, 273, 307, 377
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	506
Pfl23II	CGTACG	1 cut(s)	96
PflFI	GACNNNGTC	1 cut(s)	493
PkrI	GCNGC	3 cut(s)	298, 442, 445
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PsiI	TTATAA	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	454
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	4 cut(s)	109, 273, 307, 377
PspPI	GGNCC	2 cut(s)	128, 376
PsuI	RGATCY	3 cut(s)	107, 361, 466
PsyI	GACNNNGTC	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	4 cut(s)	14, 98, 218, 399
RsaNI	GTAC	4 cut(s)	13, 97, 217, 398
SacI	GAGCTC	1 cut(s)	454
SaqAI	TTAA	3 cut(s)	117, 264, 387
SatI	GCNGC	3 cut(s)	297, 441, 444
Sau3AI	GATC	3 cut(s)	107, 361, 466
Sau96I	GGNCC	2 cut(s)	128, 376
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	2 cut(s)	29, 454
SfaNI	GCATC	3 cut(s)	171, 475, 576
SinI	GGWCC	2 cut(s)	128, 376
SmlI	CTYRAG	3 cut(s)	68, 245, 386
SmoI	CTYRAG	3 cut(s)	68, 245, 386
Sse9I	AATT	2 cut(s)	212, 510
SsiI	CCGC	5 cut(s)	223, 280, 297, 446, 550
SstI	GAGCTC	1 cut(s)	454
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	561
TaiI	ACGT	5 cut(s)	90, 117, 153, 258, 318
TaqI	TCGA	1 cut(s)	84
TasI	AATT	2 cut(s)	212, 510
TatI	WGTACW	2 cut(s)	216, 397
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	3 cut(s)	117, 264, 387
Tru9I	TTAA	3 cut(s)	117, 264, 387
TscAI	CASTG	1 cut(s)	109
TseI	GCWGC	2 cut(s)	440, 443
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	109
Tth111I	GACNNNGTC	1 cut(s)	493
Vha464I	CTTAAG	1 cut(s)	386
VpaK11BI	GGWCC	2 cut(s)	128, 376
XmiI	GTMKAC	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	363
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.