AT1G75760

ER lumen protein retaining receptor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017884
Physical Location & Seq
Reverse (-)
28446632 .. 28448735
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75760.1

Sequence Viewer

Length: 819 bp
ATGAAGGCGGCAACAAGGCCGATCCACGCCGTGACGACATGGGTTCGTCGGCAACCACCAAAGGTTAAAGGTTTTCTCGGTGTTGTCTCCGCCATGACTGCCCTCGTTTTGTTGAGAGTGATTGTTCATGACCACGACAATCTTTTTGTCGCTGCTGAAGCTGTTCATTCCCTTGGAATCTCCGTCCTTATCTATAAACTCACCAAGGAGAGGACTTGTGCTGGATTATCTCTCAAGTCACAAGAGCTAACAGCTCTGTTTTTGGCGGTGAGACTGTATTGTAGTTTTGTGATGGAGTTTGATATTCACACGTTACTTGACTCGGCTACATTGGTGACTACACTTTTTGTTATCTATATGATCCGTTTTAAGCTCAAAGCTAGTTATATGGACGACAAAGACAATTTTGCTATCTACTACGTCGTTATTCCATGTGTTGTTCTATCAGTACTCATTCACCCATCAACACATCATCATATAATCAATAAGATTTCTTGGGCCTTCTGTGTTTACCTTGAAGCTGTTTCAGTCCTTCCTCAACTTAGAGTCATGCAAAACACTAAGATCGTGGAGCCATTTACAGCACATTACGTATTCGCTTTGGGGATCGCTAGGTTCTTGAGTTGTGCACACTGGGTCCTTCAGGTTTTGGACACTCGAGGGCGGTTATTGACTGCTTTAGGATATGGTTTCTGGCCTATAATGGTTCTTCTCTCTGAAATCGTCCAAACCTTCATTCTAGCCGACTTCTGCTACTACTATGTCAAGAGTTTAATGGGTGGTCAGCTTGTTCTTCGTCTCCCGTCAGGTGTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05110 map05110
Pfam Domains
Protein Families
ER_lumen_recept

Protein Analysis

272

Amino Acids

30.7

Weight (kDa)

9.2

Isoelectric Point (pI)

26.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ER_lumen_recept PF00810 72 - 214 1.4e-43 ER lumen protein retaining receptor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017884)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75760 AT1G75760 AT1G75760
fragaria_vesca FvH4_2g38470
rosa_chinensis RchiOBHm_Chr6g0302831
rosa_laevigata RLG00000011134
rosa_multiflora Rmu_ssc0000460.1_g000007
rosa_rugosa Rorug06G0317600
rosa_samantha Rh6AG430800 Rh6BG471900
rosa_wichuraiana Rw6G037320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 8, 90, 266, 664
AclWI GGATC 3 cut(s) 16, 355, 614
AcuI CTGAAG 2 cut(s) 177, 626
AdeI CACNNNGTG 1 cut(s) 31
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 1 cut(s) 518
AjuI GAANNNNNNNTTGG 2 cut(s) 720, 752
AluBI AGCT 7 cut(s) 161, 247, 254, 373, 380, 521, 787
AluI AGCT 7 cut(s) 161, 247, 254, 373, 380, 521, 787
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 3 cut(s) 91, 265, 803
Alw44I GTGCAC 1 cut(s) 627
AlwI GGATC 3 cut(s) 16, 355, 614
Ama87I CYCGRG 1 cut(s) 657
AoxI GGCC 3 cut(s) 17, 498, 695
ApaLI GTGCAC 1 cut(s) 627
ApeKI GCWGC 1 cut(s) 152
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
Asp700I GAANNNNTTC 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 498, 637
AsuHPI GGTGA 4 cut(s) 193, 280, 346, 449
AvaI CYCGRG 1 cut(s) 657
AvaII GGWCC 1 cut(s) 637
BaeGI GKGCMC 1 cut(s) 631
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 286, 469
BceAI ACGGC 1 cut(s) 14
BcoDI GTCTC 3 cut(s) 91, 265, 803
BfaI CTAG 3 cut(s) 381, 612, 740
BisI GCNGC 2 cut(s) 9, 153
BlsI GCNGC 2 cut(s) 10, 154
BmcAI AGTACT 1 cut(s) 450
Bme18I GGWCC 1 cut(s) 637
BmeT110I CYCGRG 1 cut(s) 657
BmgT120I GGNCC 2 cut(s) 498, 637
BmiI GGNNCC 2 cut(s) 573, 638
BmrI ACTGGG 1 cut(s) 643
BmuI ACTGGG 1 cut(s) 643
BpuEI CTTGAG 2 cut(s) 218, 640
BsaAI YACGTR 1 cut(s) 592
BsaJI CCNNGG 2 cut(s) 172, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 638
BseDI CCNNGG 2 cut(s) 172, 204
BseLI CCNNNNNNNGG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 638
BseSI GKGCMC 1 cut(s) 631
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 3 cut(s) 19, 500, 697
BsiHKAI GWGCWC 1 cut(s) 631
BsiHKCI CYCGRG 1 cut(s) 657
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 3 cut(s) 91, 265, 803
BsmBI CGTCTC 1 cut(s) 803
BsnI GGCC 3 cut(s) 19, 500, 697
BsoBI CYCGRG 1 cut(s) 657
Bsp1286I GDGCHC 1 cut(s) 631
Bsp143I GATC 4 cut(s) 21, 360, 564, 606
BspACI CCGC 4 cut(s) 8, 90, 266, 664
BspANI GGCC 3 cut(s) 19, 500, 697
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 573, 638
BspPI GGATC 3 cut(s) 16, 355, 614
BsrI ACTGG 1 cut(s) 638
BssECI CCNNGG 2 cut(s) 172, 204
BssMI GATC 4 cut(s) 21, 360, 564, 606
BssT1I CCWWGG 2 cut(s) 172, 204
Bst4CI ACNGT 1 cut(s) 276
BstBAI YACGTR 1 cut(s) 592
BstDEI CTNAG 2 cut(s) 542, 561
BstKTI GATC 4 cut(s) 24, 363, 567, 609
BstMAI GTCTC 3 cut(s) 91, 265, 803
BstMBI GATC 4 cut(s) 21, 360, 564, 606
BstMWI GCNNNNNNNGC 2 cut(s) 98, 158
BstSLI GKGCMC 1 cut(s) 631
BstSNI TACGTA 1 cut(s) 592
BstV1I GCAGC 1 cut(s) 139
BsuRI GGCC 3 cut(s) 19, 500, 697
BtsIMutI CAGTG 1 cut(s) 631
CciI TCATGA 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 498, 637
Csp6I GTAC 1 cut(s) 449
CviAII CATG 5 cut(s) 39, 94, 128, 432, 550
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 2 cut(s) 542, 561
DpnI GATC 4 cut(s) 23, 362, 566, 608
DpnII GATC 4 cut(s) 21, 360, 564, 606
DraIII CACNNNGTG 1 cut(s) 31
EciI GGCGGA 1 cut(s) 79
Eco105I TACGTA 1 cut(s) 592
Eco130I CCWWGG 2 cut(s) 172, 204
Eco47I GGWCC 1 cut(s) 637
Eco57I CTGAAG 2 cut(s) 177, 626
Eco88I CYCGRG 1 cut(s) 657
EcoO109I RGGNCCY 1 cut(s) 637
EcoT14I CCWWGG 2 cut(s) 172, 204
ErhI CCWWGG 2 cut(s) 172, 204
Esp3I CGTCTC 1 cut(s) 803
FaeI CATG 5 cut(s) 42, 97, 131, 435, 553
FatI CATG 5 cut(s) 38, 93, 127, 431, 549
Fnu4HI GCNGC 2 cut(s) 9, 153
Fsp4HI GCNGC 2 cut(s) 9, 153
FspBI CTAG 3 cut(s) 381, 612, 740
GluI GCNGC 2 cut(s) 9, 153
HaeIII GGCC 3 cut(s) 19, 500, 697
Hin1II CATG 5 cut(s) 42, 97, 131, 435, 553
HinfI GANTC 3 cut(s) 177, 320, 546
HphI GGTGA 4 cut(s) 193, 280, 346, 449
Hpy166II GTNNAC 2 cut(s) 511, 629
Hpy188I TCNGA 1 cut(s) 718
Hpy188III TCNNGA 3 cut(s) 128, 619, 766
Hpy8I GTNNAC 2 cut(s) 511, 629
Hpy99I CGWCG 2 cut(s) 51, 425
HpyAV CCTTC 4 cut(s) 511, 542, 650, 742
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4IV ACGT 3 cut(s) 311, 420, 591
HpyCH4V TGCA 2 cut(s) 553, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 158
HpyF3I CTNAG 2 cut(s) 542, 561
HpySE526I ACGT 3 cut(s) 311, 420, 591
Hsp92II CATG 5 cut(s) 42, 97, 131, 435, 553
Kzo9I GATC 4 cut(s) 21, 360, 564, 606
LmnI GCTCC 1 cut(s) 571
LpnPI CCDG 5 cut(s) 207, 619, 629, 679, 792
Lsp1109I GCAGC 1 cut(s) 139
MaeI CTAG 3 cut(s) 381, 612, 740
MaeII ACGT 3 cut(s) 311, 420, 591
MaeIII GTNAC 4 cut(s) 31, 237, 312, 334
MalI GATC 4 cut(s) 23, 362, 566, 608
MboI GATC 4 cut(s) 21, 360, 564, 606
MboII GAAGA 2 cut(s) 701, 785
MhlI GDGCHC 1 cut(s) 631
MluCI AATT 1 cut(s) 403
MlyI GAGTC 2 cut(s) 314, 555
MnlI CCTC 4 cut(s) 113, 204, 546, 653
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 3 cut(s) 66, 369, 773
MwoI GCNNNNNNNGC 2 cut(s) 98, 158
NdeII GATC 4 cut(s) 21, 360, 564, 606
NlaIII CATG 5 cut(s) 42, 97, 131, 435, 553
NlaIV GGNNCC 2 cut(s) 573, 638
NmeAIII GCCGAG 1 cut(s) 302
NmuCI GTSAC 3 cut(s) 31, 237, 334
PaeR7I CTCGAG 1 cut(s) 657
PagI TCATGA 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 2 cut(s) 10, 154
PleI GAGTC 2 cut(s) 314, 554
PpsI GAGTC 2 cut(s) 314, 554
Ppu21I YACGTR 1 cut(s) 592
PpuMI RGGWCCY 1 cut(s) 637
Psp5II RGGWCCY 1 cut(s) 637
PspN4I GGNNCC 2 cut(s) 573, 638
PspPI GGNCC 2 cut(s) 498, 637
PspPPI RGGWCCY 1 cut(s) 637
PspXI VCTCGAGB 1 cut(s) 657
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
SaqAI TTAA 3 cut(s) 66, 369, 773
SatI GCNGC 2 cut(s) 9, 153
Sau3AI GATC 4 cut(s) 21, 360, 564, 606
Sau96I GGNCC 2 cut(s) 498, 637
ScaI AGTACT 1 cut(s) 450
SchI GAGTC 2 cut(s) 314, 555
SduI GDGCHC 1 cut(s) 631
Sfr274I CTCGAG 1 cut(s) 657
SinI GGWCC 1 cut(s) 637
SlaI CTCGAG 1 cut(s) 657
SmlI CTYRAG 3 cut(s) 233, 619, 657
SmoI CTYRAG 3 cut(s) 233, 619, 657
SnaBI TACGTA 1 cut(s) 592
Sse9I AATT 1 cut(s) 403
SsiI CCGC 4 cut(s) 8, 90, 266, 664
SspMI CTAG 3 cut(s) 381, 612, 740
StyI CCWWGG 2 cut(s) 172, 204
TaaI ACNGT 1 cut(s) 276
TaiI ACGT 3 cut(s) 314, 423, 594
TaqI TCGA 1 cut(s) 658
TasI AATT 1 cut(s) 403
TatI WGTACW 1 cut(s) 448
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 3 cut(s) 66, 369, 773
Tru9I TTAA 3 cut(s) 66, 369, 773
TscAI CASTG 1 cut(s) 638
TseFI GTSAC 3 cut(s) 31, 237, 334
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 3 cut(s) 31, 237, 334
TspDTI ATGAA 4 cut(s) 17, 116, 155, 724
TspGWI ACGGA 2 cut(s) 172, 353
TspRI CASTG 1 cut(s) 638
VneI GTGCAC 1 cut(s) 627
VpaK11BI GGWCC 1 cut(s) 637
XhoI CTCGAG 1 cut(s) 657
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 3 cut(s) 381, 612, 740
ZrmI AGTACT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.