proton gradient regulation 5
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G05620 AT2G05620 |
| fragaria_vesca | FvH4_4g04430 FvH4_4g04430 |
| malus_domestica | MD13G1219800.v1.1 MD16G1225200.v1.1 |
| prunus_persica | Prupe.1G046500_v2.0.a1 |
| pyrus_communis | pycom16g18810 |
| rosa_chinensis | RchiOBHm_Chr4g0394991 |
| rosa_laevigata | RLG00000009652 |
| rosa_multiflora | Rmu_sc0005802.1_g000032 |
| rosa_roxburghii | Rroxscaffold_5G00339970 |
| rosa_rugosa | Rorug03G0360200.1 |
| rosa_samantha | Rh4AG056300 Rh4BG055000 Rh4CG060900 Rh4DG052500 |
| rosa_wichuraiana | Rw4G004510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 86 |
| AciI | CCGC | 1 cut(s) | 131 |
| AluBI | AGCT | 1 cut(s) | 265 |
| AluI | AGCT | 1 cut(s) | 265 |
| Alw26I | GTCTC | 2 cut(s) | 151, 337 |
| Aor13HI | TCCGGA | 1 cut(s) | 86 |
| ApeKI | GCWGC | 2 cut(s) | 5, 8 |
| AspLEI | GCGC | 1 cut(s) | 127 |
| AsuHPI | GGTGA | 1 cut(s) | 310 |
| BccI | CCATC | 2 cut(s) | 63, 89 |
| BclI | TGATCA | 1 cut(s) | 300 |
| BcoDI | GTCTC | 2 cut(s) | 151, 337 |
| BfaI | CTAG | 2 cut(s) | 218, 239 |
| BisI | GCNGC | 2 cut(s) | 6, 9 |
| BlsI | GCNGC | 2 cut(s) | 7, 10 |
| BmsI | GCATC | 1 cut(s) | 322 |
| BpuEI | CTTGAG | 1 cut(s) | 133 |
| Bsa29I | ATCGAT | 1 cut(s) | 320 |
| BsaWI | WCCGGW | 1 cut(s) | 86 |
| Bse3DI | GCAATG | 1 cut(s) | 279 |
| BseAI | TCCGGA | 1 cut(s) | 86 |
| BseCI | ATCGAT | 1 cut(s) | 320 |
| BseGI | GGATG | 2 cut(s) | 35, 74 |
| BseMI | GCAATG | 1 cut(s) | 279 |
| BseMII | CTCAG | 3 cut(s) | 280, 297, 308 |
| BshVI | ATCGAT | 1 cut(s) | 320 |
| BsiSI | CCGG | 1 cut(s) | 87 |
| BsmAI | GTCTC | 2 cut(s) | 151, 337 |
| Bsp13I | TCCGGA | 1 cut(s) | 86 |
| Bsp143I | GATC | 1 cut(s) | 300 |
| BspACI | CCGC | 1 cut(s) | 131 |
| BspCNI | CTCAG | 3 cut(s) | 279, 298, 307 |
| BspDI | ATCGAT | 1 cut(s) | 320 |
| BspEI | TCCGGA | 1 cut(s) | 86 |
| BsrDI | GCAATG | 1 cut(s) | 279 |
| BssMI | GATC | 1 cut(s) | 300 |
| Bst4CI | ACNGT | 1 cut(s) | 121 |
| Bst6I | CTCTTC | 1 cut(s) | 245 |
| BstC8I | GCNNGC | 1 cut(s) | 363 |
| BstDEI | CTNAG | 5 cut(s) | 266, 294, 306, 366, 399 |
| BstF5I | GGATG | 2 cut(s) | 35, 74 |
| BstHHI | GCGC | 1 cut(s) | 127 |
| BstKTI | GATC | 1 cut(s) | 303 |
| BstMAI | GTCTC | 2 cut(s) | 151, 337 |
| BstMBI | GATC | 1 cut(s) | 300 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 164, 358 |
| Bsu15I | ATCGAT | 1 cut(s) | 320 |
| BsuTUI | ATCGAT | 1 cut(s) | 320 |
| BtsCI | GGATG | 2 cut(s) | 35, 74 |
| BtsIMutI | CAGTG | 1 cut(s) | 303 |
| Cac8I | GCNNGC | 1 cut(s) | 363 |
| CfoI | GCGC | 1 cut(s) | 127 |
| ClaI | ATCGAT | 1 cut(s) | 320 |
| CviAII | CATG | 1 cut(s) | 106 |
| CviJI | RGCY | 8 cut(s) | 5, 140, 204, 265, 278, 352, 361, 385 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 140, 204, 265, 278, 352, 361, 385 |
| DdeI | CTNAG | 5 cut(s) | 266, 294, 306, 366, 399 |
| DpnI | GATC | 1 cut(s) | 302 |
| DpnII | GATC | 1 cut(s) | 300 |
| Eam1104I | CTCTTC | 1 cut(s) | 245 |
| EarI | CTCTTC | 1 cut(s) | 245 |
| FaeI | CATG | 1 cut(s) | 109 |
| FaiI | YATR | 2 cut(s) | 63, 107 |
| FatI | CATG | 1 cut(s) | 105 |
| FbaI | TGATCA | 1 cut(s) | 300 |
| Fnu4HI | GCNGC | 2 cut(s) | 6, 9 |
| FokI | GGATG | 2 cut(s) | 42, 81 |
| Fsp4HI | GCNGC | 2 cut(s) | 6, 9 |
| FspBI | CTAG | 2 cut(s) | 218, 239 |
| GlaI | GCGC | 1 cut(s) | 126 |
| GluI | GCNGC | 2 cut(s) | 6, 9 |
| HapII | CCGG | 1 cut(s) | 87 |
| HhaI | GCGC | 1 cut(s) | 127 |
| Hin1II | CATG | 1 cut(s) | 109 |
| Hin6I | GCGC | 1 cut(s) | 125 |
| HinP1I | GCGC | 1 cut(s) | 125 |
| HinfI | GANTC | 1 cut(s) | 144 |
| HpaII | CCGG | 1 cut(s) | 87 |
| HphI | GGTGA | 1 cut(s) | 310 |
| Hpy188I | TCNGA | 2 cut(s) | 164, 269 |
| Hpy188III | TCNNGA | 1 cut(s) | 87 |
| HpyAV | CCTTC | 2 cut(s) | 67, 188 |
| HpyCH4III | ACNGT | 1 cut(s) | 121 |
| HpyCH4V | TGCA | 4 cut(s) | 23, 212, 315, 335 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 164, 358 |
| HpyF3I | CTNAG | 5 cut(s) | 266, 294, 306, 366, 399 |
| Hsp92II | CATG | 1 cut(s) | 109 |
| HspAI | GCGC | 1 cut(s) | 125 |
| Kpn2I | TCCGGA | 1 cut(s) | 86 |
| Ksp22I | TGATCA | 1 cut(s) | 300 |
| Kzo9I | GATC | 1 cut(s) | 300 |
| LmnI | GCTCC | 1 cut(s) | 326 |
| LpnPI | CCDG | 4 cut(s) | 100, 154, 281, 343 |
| LweI | GCATC | 1 cut(s) | 322 |
| MaeI | CTAG | 2 cut(s) | 218, 239 |
| MaeIII | GTNAC | 1 cut(s) | 226 |
| MalI | GATC | 1 cut(s) | 302 |
| MboI | GATC | 1 cut(s) | 300 |
| MboII | GAAGA | 4 cut(s) | 104, 193, 262, 382 |
| MlyI | GAGTC | 1 cut(s) | 153 |
| MnlI | CCTC | 5 cut(s) | 59, 225, 246, 263, 375 |
| MroI | TCCGGA | 1 cut(s) | 86 |
| MseI | TTAA | 1 cut(s) | 258 |
| MspI | CCGG | 1 cut(s) | 87 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 164, 358 |
| NdeII | GATC | 1 cut(s) | 300 |
| NlaIII | CATG | 1 cut(s) | 109 |
| NmuCI | GTSAC | 1 cut(s) | 226 |
| PkrI | GCNGC | 2 cut(s) | 7, 10 |
| PleI | GAGTC | 1 cut(s) | 152 |
| PpsI | GAGTC | 1 cut(s) | 152 |
| SaqAI | TTAA | 1 cut(s) | 258 |
| SatI | GCNGC | 2 cut(s) | 6, 9 |
| Sau3AI | GATC | 1 cut(s) | 300 |
| SchI | GAGTC | 1 cut(s) | 153 |
| SetI | ASST | 5 cut(s) | 217, 240, 257, 267, 300 |
| SfaNI | GCATC | 1 cut(s) | 322 |
| SmlI | CTYRAG | 1 cut(s) | 148 |
| SmoI | CTYRAG | 1 cut(s) | 148 |
| SsiI | CCGC | 1 cut(s) | 131 |
| SspMI | CTAG | 2 cut(s) | 218, 239 |
| TaaI | ACNGT | 1 cut(s) | 121 |
| TaqI | TCGA | 2 cut(s) | 14, 320 |
| Tru1I | TTAA | 1 cut(s) | 258 |
| Tru9I | TTAA | 1 cut(s) | 258 |
| TscAI | CASTG | 1 cut(s) | 310 |
| TseFI | GTSAC | 1 cut(s) | 226 |
| TseI | GCWGC | 2 cut(s) | 5, 8 |
| Tsp45I | GTSAC | 1 cut(s) | 226 |
| TspDTI | ATGAA | 2 cut(s) | 194, 207 |
| TspRI | CASTG | 1 cut(s) | 310 |
| XspI | CTAG | 2 cut(s) | 218, 239 |