Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013524

Physical Location & Seq

Genomic Coordinates Forward (+)

21293170 .. 21294456

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1219800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCAACCTCAGTTTCTGCAAATTTGAATTCGTCGTTCCATGGAAGTTGGGGGAGTTCGGTTGTCGGAGAAGATTATGGGACGTTGGTGAAGGCGGTCCCGAACCAAGTGAGAGTTGGGAAGGCGGTGAGAGCGCAGCCGATGATGAAGAACATCAATGAAGGCAAAGGTGTCTTTGCACCTCTTGTTGTTGTCACGCGTAACATTGTTGGCAAGAAGAGGTTCAATCAGATTAGAGGCAAAGCTATTGCTTTGCACTCGCAGGTAATTACCGAGTTCTGCAAATCGATAGGAGCAGACGCGAAACAAAGGCAAGGACTGATTCGTCTGGCGAAGAAGAACGGAGAGAGGCTGGGGTTCCTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009055 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009767 GO:0009773 GO:0009987 GO:0010035 GO:0010117 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0104004 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.12

Weight (kDa)

10.84

Isoelectric Point (pI)

19.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05620 AT2G05620
fragaria_vesca	FvH4_4g04430 FvH4_4g04430
malus_domestica	MD13G1219800.v1.1 MD16G1225200.v1.1
prunus_persica	Prupe.1G046500_v2.0.a1
pyrus_communis	pycom16g18810
rosa_chinensis	RchiOBHm_Chr4g0394991
rosa_laevigata	RLG00000009652
rosa_multiflora	Rmu_sc0005802.1_g000032
rosa_roxburghii	Rroxscaffold_5G00339970
rosa_rugosa	Rorug03G0360200.1
rosa_samantha	Rh4AG056300 Rh4BG055000 Rh4CG060900 Rh4DG052500
rosa_wichuraiana	Rw4G004510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	324
Acc36I	ACCTGC	1 cut(s)	253
AccII	CGCG	2 cut(s)	199, 302
AciI	CCGC	2 cut(s)	95, 125
AcsI	RAATTY	2 cut(s)	22, 28
AflIII	ACRYGT	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	28, 226
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	2 cut(s)	22, 28
Asp700I	GAANNNNTTC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	2 cut(s)	100, 139
AvaII	GGWCC	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	362
BfuAI	ACCTGC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
Bme1390I	CCNGG	1 cut(s)	362
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	2 cut(s)	99, 359
BmrFI	CCNGG	1 cut(s)	362
Bsa29I	ATCGAT	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	362
BseCI	ATCGAT	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	352
Bsh1236I	CGCG	2 cut(s)	199, 302
BshVI	ATCGAT	1 cut(s)	287
BslFI	GGGAC	2 cut(s)	83, 94
BsmFI	GGGAC	2 cut(s)	83, 94
Bsp19I	CCATGG	1 cut(s)	40
BspACI	CCGC	2 cut(s)	95, 125
BspCNI	CTCAG	1 cut(s)	23
BspDI	ATCGAT	1 cut(s)	287
BspFNI	CGCG	2 cut(s)	199, 302
BspLI	GGNNCC	2 cut(s)	99, 359
BspMI	ACCTGC	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	10
BstDSI	CCRYGG	1 cut(s)	40
BstFNI	CGCG	2 cut(s)	199, 302
BstHHI	GCGC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	360
BstUI	CGCG	2 cut(s)	199, 302
BstV1I	GCAGC	1 cut(s)	148
Bsu15I	ATCGAT	1 cut(s)	287
BsuTUI	ATCGAT	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	40
BveI	ACCTGC	1 cut(s)	253
CaiI	CAGNNNCTG	1 cut(s)	17
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	97
ClaI	ATCGAT	1 cut(s)	287
CseI	GACGC	1 cut(s)	308
CviAII	CATG	1 cut(s)	41
CviJI	RGCY	3 cut(s)	139, 245, 352
CviKI_1	RGCY	3 cut(s)	139, 245, 352
DdeI	CTNAG	1 cut(s)	10
DrdI	GACNNNNNNGTC	1 cut(s)	324
DseDI	GACNNNNNNGTC	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	1 cut(s)	44
FaiI	YATR	2 cut(s)	42, 78
FaqI	GGGAC	2 cut(s)	83, 94
FatI	CATG	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	137
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	137
GsaI	CCCAGC	1 cut(s)	356
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	44
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	1 cut(s)	322
HphI	GGTGA	2 cut(s)	100, 139
Hpy188I	TCNGA	2 cut(s)	68, 231
Hpy188III	TCNNGA	1 cut(s)	100
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	3 cut(s)	85, 115, 155
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	4 cut(s)	20, 179, 256, 282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	10
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	44
HspAI	GCGC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	4 cut(s)	248, 314, 338, 347
Lsp1109I	GCAGC	1 cut(s)	148
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	193, 200
MboII	GAAGA	5 cut(s)	83, 160, 229, 346, 349
MluCI	AATT	3 cut(s)	22, 28, 267
MluI	ACGCGT	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	5 cut(s)	19, 192, 213, 230, 342
MroXI	GAANNNNTTC	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MvnI	CGCG	2 cut(s)	199, 302
MwoI	GCNNNNNNNGC	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	40
NlaIII	CATG	1 cut(s)	44
NlaIV	GGNNCC	2 cut(s)	99, 359
NmuCI	GTSAC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	99, 359
PspPI	GGNCC	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	17
SatI	GCNGC	1 cut(s)	137
Sau96I	GGNCC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	362
SetI	ASST	7 cut(s)	11, 86, 172, 184, 224, 247, 267
SinI	GGWCC	1 cut(s)	97
Sse9I	AATT	3 cut(s)	22, 28, 267
SsiI	CCGC	2 cut(s)	95, 125
StyD4I	CCNGG	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	40
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	287
TasI	AATT	3 cut(s)	22, 28, 267
TfiI	GAWTC	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	161, 174
TspGWI	ACGGA	1 cut(s)	357
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	2 cut(s)	22, 28
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.