FvH4_4g04430

Protein PROTON GRADIENT REGULATION 5

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
3790663 .. 3791947
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g04430.t2

Sequence Viewer

Length: 384 bp
ATGGCAACTTCAATTTCTGCAACTGGGTTCCAAGGAAACTTGAGCTCCTCCTTCCATGGAAGTTGGGGAAGTTCAATTGCAGGTGAAGATTATAGCATGCTAGCCAAGTCAGTAAAAACCCAAGTGAGAGTTGCAAAGCCAAGCAGAGCACAACCCATGATGAAGAACATCAATGAAGGAAAGGGACTCTTTGCACCAATTGTAGTTGTTGCAAGAGACGTTATTGGGAAGAAGCGGTTCAATCAACTTAGGGGGAAGGCAATTGCTTTGCACTCTCAGGTAATCACCGAGTTCTGCAAATCCATAGGAGCTGATGCAAAGCAAAGGCAAGGGCTGATTCGGCTGGCAAAGAAGAATGGAGAAAAGCTAGGATTCCTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.64

Weight (kDa)

10.53

Isoelectric Point (pI)

21.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013524)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 71
AciI CCGC 1 cut(s) 235
AgsI TTSAA 3 cut(s) 12, 75, 241
AluBI AGCT 3 cut(s) 45, 311, 367
AluI AGCT 3 cut(s) 45, 311, 367
Alw21I GWGCWC 2 cut(s) 47, 151
Alw26I GTCTC 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 95, 277
AsuNHI GCTAGC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 47
Bbv12I GWGCWC 2 cut(s) 47, 151
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 2 cut(s) 101, 368
BfuAI ACCTGC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 29
BmrI ACTGGG 1 cut(s) 33
BmsI GCATC 1 cut(s) 304
BmtI GCTAGC 1 cut(s) 104
BmuI ACTGGG 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 31, 55
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bse1I ACTGG 1 cut(s) 28
BseDI CCNNGG 2 cut(s) 31, 55
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 37
BsiHKAI GWGCWC 2 cut(s) 47, 151
BslFI GGGAC 1 cut(s) 198
BsmAI GTCTC 1 cut(s) 210
BsmBI CGTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 198
Bsp1286I GDGCHC 2 cut(s) 47, 151
Bsp19I CCATGG 1 cut(s) 55
BspACI CCGC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 71
BspOI GCTAGC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 31, 55
BssT1I CCWWGG 2 cut(s) 31, 55
BstC8I GCNNGC 3 cut(s) 98, 102, 345
BstDEI CTNAG 2 cut(s) 248, 276
BstDSI CCRYGG 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 340
BstNSI RCATGY 1 cut(s) 100
BtgI CCRYGG 1 cut(s) 55
BveI ACCTGC 1 cut(s) 71
Cac8I GCNNGC 3 cut(s) 98, 102, 345
CviAII CATG 4 cut(s) 56, 97, 157, 381
CviJI RGCY 7 cut(s) 45, 104, 139, 311, 334, 343, 367
CviKI_1 RGCY 7 cut(s) 45, 104, 139, 311, 334, 343, 367
DdeI CTNAG 2 cut(s) 248, 276
Ecl136II GAGCTC 1 cut(s) 45
Eco130I CCWWGG 2 cut(s) 31, 55
Eco24I GRGCYC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 45
EcoICRI GAGCTC 1 cut(s) 45
EcoT14I CCWWGG 2 cut(s) 31, 55
EcoT38I GRGCYC 1 cut(s) 47
ErhI CCWWGG 2 cut(s) 31, 55
Esp3I CGTCTC 1 cut(s) 210
FaeI CATG 4 cut(s) 59, 100, 160, 384
FaiI YATR 6 cut(s) 57, 93, 98, 158, 305, 382
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FaqI GGGAC 1 cut(s) 198
FatI CATG 4 cut(s) 55, 96, 156, 380
FriOI GRGCYC 1 cut(s) 47
FspBI CTAG 2 cut(s) 101, 368
Hin1II CATG 4 cut(s) 59, 100, 160, 384
HinfI GANTC 3 cut(s) 186, 337, 372
HphI GGTGA 2 cut(s) 95, 277
HpyAV CCTTC 3 cut(s) 61, 170, 250
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 9 cut(s) 20, 80, 134, 194, 212, 271, 297, 317, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 340
HpyF3I CTNAG 2 cut(s) 248, 276
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 4 cut(s) 59, 100, 160, 384
LmnI GCTCC 2 cut(s) 50, 308
LpnPI CCDG 4 cut(s) 9, 66, 263, 329
LweI GCATC 1 cut(s) 304
MaeI CTAG 2 cut(s) 101, 368
MaeII ACGT 1 cut(s) 219
MboII GAAGA 4 cut(s) 98, 175, 241, 364
MfeI CAATTG 3 cut(s) 75, 198, 261
MhlI GDGCHC 2 cut(s) 47, 151
MluCI AATT 4 cut(s) 12, 75, 198, 261
MlyI GAGTC 1 cut(s) 180
MnlI CCTC 1 cut(s) 58
MroXI GAANNNNTTC 1 cut(s) 236
MunI CAATTG 3 cut(s) 75, 198, 261
MwoI GCNNNNNNNGC 1 cut(s) 340
NcoI CCATGG 1 cut(s) 55
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 4 cut(s) 59, 100, 160, 384
NlaIV GGNNCC 1 cut(s) 29
NspI RCATGY 1 cut(s) 100
PaeI GCATGC 1 cut(s) 100
PaqCI CACCTGC 1 cut(s) 71
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 2 cut(s) 337, 372
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 29
SacI GAGCTC 1 cut(s) 47
SchI GAGTC 1 cut(s) 180
SduI GDGCHC 2 cut(s) 47, 151
SetI ASST 6 cut(s) 47, 85, 222, 282, 313, 369
SfaNI GCATC 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
SphI GCATGC 1 cut(s) 100
Sse9I AATT 4 cut(s) 12, 75, 198, 261
SsiI CCGC 1 cut(s) 235
SspMI CTAG 2 cut(s) 101, 368
SstI GAGCTC 1 cut(s) 47
StyI CCWWGG 2 cut(s) 31, 55
TaiI ACGT 1 cut(s) 222
TasI AATT 4 cut(s) 12, 75, 198, 261
TfiI GAWTC 2 cut(s) 337, 372
TspDTI ATGAA 2 cut(s) 176, 189
XceI RCATGY 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 2 cut(s) 101, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.