AT2G07599

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0019171
Physical Location & Seq
Reverse (-)
3348796 .. 3351212
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G07599.1

Sequence Viewer

Length: 786 bp
ATGAATGAAGAAGTTGGGCCTTTCACCCTCTTTCTAGTTACTCTGGGAGCTGATCTGATAAATGCACTTCAAAGGGAGGGAAGGCTAGGAATCTCATCTGCAGAGACAACTGGAACAGAAGCTTCACTGGAAGAGGTAAAGACTACGTCACTGAAGAGTGGTTTGAAGAACAATACAACGATCCCAGCTCGGACAGTAACTGGTCGAAAAGCCTCTGCTAAAGATCGCGTAGATCACACTGGAACTGGAGTAGTGGAACTAGCACGACGAACAATGCTCGGCACTCTGGTCAAATCAGATCCACCAGACGAGAAACTCAATTCCGCACTGCTGCTGAGTCGTCGGACTTATCCACCAAGGGATTCGTGGAATTTCTCGCCTCCTTTTGAGTATGCCGATACTAAGAGTCCTCTCACTACCAACCAGCAGACATCATCTGGCTGGGTCTTGCCGGGTAGATCGGAGCAAGAGGGAACGCCTAGACGACGTTTTTATTCCTGGGCTGCTGTAAGTAGATCGAGAGGTCGTTCCGCCCCTTGTCCCCGAAGATGGGTAATATGTTCTCAAAAAATGTTGCTTCAATCTGACCTAGCTGGCGAGCGATCCCAGTTCGCGGCAGAGAACAAGACAGCAAGCGAGCGTACCTTTGTTCGCTTCTTCTCCACCAAGCACGGAAGTTTAAGGATAACTGTAGGTCGGTGGCTACCTAAGGAAACTGCGATTCGATCCGCCCCCCGAAAAGGAGGCATTTACCTCATCCCGATCACAAGGAGAGGTTCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

28.88

Weight (kDa)

10.53

Isoelectric Point (pI)

58.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019171)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07599 AT2G07599 ATMG01040
rosa_chinensis RchiOBHm_Chr6g0256741 RchiOBHm_MTg0498811
rosa_laevigata RLG00000000148 RLG00000000432 RLG00000000493

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 228, 614
AciI CCGC 4 cut(s) 324, 531, 614, 729
AclWI GGATC 4 cut(s) 175, 293, 597, 720
AcsI RAATTY 1 cut(s) 370
AcuI CTGAAG 1 cut(s) 173
AfaI GTAC 1 cut(s) 643
AfiI CCNNNNNNNGG 4 cut(s) 549, 550, 613, 740
AgsI TTSAA 3 cut(s) 71, 166, 581
AjnI CCWGG 1 cut(s) 497
AluBI AGCT 4 cut(s) 50, 122, 188, 593
AluI AGCT 4 cut(s) 50, 122, 188, 593
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 4 cut(s) 175, 293, 597, 720
AlwNI CAGNNNCTG 1 cut(s) 200
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 331, 503
ApoI RAATTY 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 2 cut(s) 16, 771
AxyI CCTNAGG 1 cut(s) 708
BbvI GCAGC 2 cut(s) 318, 490
BccI CCATC 1 cut(s) 543
BciT130I CCWGG 1 cut(s) 499
BcnI CCSGG 1 cut(s) 453
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 5 cut(s) 35, 86, 260, 480, 590
BfmI CTRYAG 2 cut(s) 99, 690
BisI GCNGC 3 cut(s) 332, 504, 615
BlsI GCNGC 3 cut(s) 333, 505, 616
Bme1390I CCNGG 2 cut(s) 453, 499
BmgT120I GGNCC 1 cut(s) 17
BmrFI CCNGG 2 cut(s) 453, 499
BmrI ACTGGG 1 cut(s) 601
BmuI ACTGGG 1 cut(s) 601
BpmI CTGGAG 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 453
BsaJI CCNNGG 2 cut(s) 356, 498
Bsc4I CCNNNNNNNGG 4 cut(s) 549, 550, 613, 740
Bse1I ACTGG 6 cut(s) 115, 132, 205, 244, 250, 607
Bse21I CCTNAGG 1 cut(s) 708
BseBI CCWGG 1 cut(s) 499
BseDI CCNNGG 2 cut(s) 356, 498
BseGI GGATG 1 cut(s) 756
BseLI CCNNNNNNNGG 4 cut(s) 549, 550, 613, 740
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 6 cut(s) 115, 132, 205, 244, 250, 607
BseXI GCAGC 2 cut(s) 318, 490
BseYI CCCAGC 2 cut(s) 184, 441
Bsh1236I CGCG 2 cut(s) 228, 614
BshFI GGCC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 525
BslI CCNNNNNNNGG 4 cut(s) 549, 550, 613, 740
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 525
BsnI GGCC 1 cut(s) 19
BspACI CCGC 4 cut(s) 324, 531, 614, 729
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 327
BspFNI CGCG 2 cut(s) 228, 614
BspMAI CTGCAG 1 cut(s) 103
BspPI GGATC 4 cut(s) 175, 293, 597, 720
BsrI ACTGG 6 cut(s) 115, 132, 205, 244, 250, 607
BssECI CCNNGG 2 cut(s) 356, 498
BssT1I CCWWGG 1 cut(s) 356
Bst2UI CCWGG 1 cut(s) 499
Bst4CI ACNGT 2 cut(s) 196, 691
Bst6I CTCTTC 2 cut(s) 126, 149
BstC8I GCNNGC 4 cut(s) 595, 599, 634, 638
BstDEI CTNAG 3 cut(s) 335, 402, 708
BstF5I GGATG 1 cut(s) 756
BstFNI CGCG 2 cut(s) 228, 614
BstMAI GTCTC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 499
BstSCI CCNGG 2 cut(s) 451, 497
BstSFI CTRYAG 2 cut(s) 99, 690
BstUI CGCG 2 cut(s) 228, 614
BstV1I GCAGC 2 cut(s) 318, 490
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
Bsu36I CCTNAGG 1 cut(s) 708
BsuRI GGCC 1 cut(s) 19
BtsCI GGATG 1 cut(s) 756
BtsI GCAGTG 1 cut(s) 326
BtsIMutI CAGTG 4 cut(s) 125, 149, 237, 326
Cac8I GCNNGC 4 cut(s) 595, 599, 634, 638
CaiI CAGNNNCTG 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 642
CviAII CATG 1 cut(s) 783
CviQI GTAC 1 cut(s) 642
DdeI CTNAG 3 cut(s) 335, 402, 708
Eam1104I CTCTTC 2 cut(s) 126, 149
EarI CTCTTC 2 cut(s) 126, 149
EciI GGCGGA 2 cut(s) 520, 718
Eco130I CCWWGG 1 cut(s) 356
Eco57I CTGAAG 1 cut(s) 173
Eco81I CCTNAGG 1 cut(s) 708
EcoRII CCWGG 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 1 cut(s) 786
FaiI YATR 3 cut(s) 393, 559, 784
FaqI GGGAC 1 cut(s) 525
FatI CATG 1 cut(s) 782
Fnu4HI GCNGC 3 cut(s) 332, 504, 615
FokI GGATG 1 cut(s) 743
Fsp4HI GCNGC 3 cut(s) 332, 504, 615
FspBI CTAG 5 cut(s) 35, 86, 260, 480, 590
GluI GCNGC 3 cut(s) 332, 504, 615
GsaI CCCAGC 2 cut(s) 188, 445
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 1 cut(s) 19
HapII CCGG 1 cut(s) 452
Hin1II CATG 1 cut(s) 786
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 5 cut(s) 90, 337, 362, 406, 721
HpaII CCGG 1 cut(s) 452
HphI GGTGA 2 cut(s) 16, 771
Hpy166II GTNNAC 1 cut(s) 779
Hpy188I TCNGA 6 cut(s) 57, 192, 298, 345, 463, 586
Hpy188III TCNNGA 2 cut(s) 519, 760
Hpy8I GTNNAC 1 cut(s) 779
Hpy99I CGWCG 3 cut(s) 270, 345, 489
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 2 cut(s) 196, 691
HpyCH4IV ACGT 2 cut(s) 146, 487
HpyCH4V TGCA 2 cut(s) 65, 101
HpyF3I CTNAG 3 cut(s) 335, 402, 708
HpySE526I ACGT 2 cut(s) 146, 487
Hsp92II CATG 1 cut(s) 786
LmnI GCTCC 2 cut(s) 47, 463
Lsp1109I GCAGC 2 cut(s) 318, 490
MaeI CTAG 5 cut(s) 35, 86, 260, 480, 590
MaeII ACGT 2 cut(s) 146, 487
MaeIII GTNAC 3 cut(s) 37, 147, 196
MboII GAAGA 6 cut(s) 20, 143, 166, 178, 558, 649
MflI RGATCY 1 cut(s) 298
MluCI AATT 2 cut(s) 319, 370
MlyI GAGTC 2 cut(s) 346, 415
MmeI TCCRAC 1 cut(s) 323
MseI TTAA 1 cut(s) 680
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 2 cut(s) 453, 499
MvaI CCWGG 1 cut(s) 499
MvnI CGCG 2 cut(s) 228, 614
NciI CCSGG 1 cut(s) 453
NlaIII CATG 1 cut(s) 786
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 147
PfeI GAWTC 3 cut(s) 90, 362, 721
PflFI GACNNNGTC 1 cut(s) 145
PkrI GCNGC 3 cut(s) 333, 505, 616
PleI GAGTC 2 cut(s) 345, 414
PpsI GAGTC 2 cut(s) 345, 414
Psp6I CCWGG 1 cut(s) 497
PspFI CCCAGC 2 cut(s) 184, 441
PspGI CCWGG 1 cut(s) 497
PspPI GGNCC 1 cut(s) 17
PstI CTGCAG 1 cut(s) 103
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 1 cut(s) 298
PsyI GACNNNGTC 1 cut(s) 145
RsaI GTAC 1 cut(s) 643
RsaNI GTAC 1 cut(s) 642
SaqAI TTAA 1 cut(s) 680
SatI GCNGC 3 cut(s) 332, 504, 615
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 2 cut(s) 346, 415
ScrFI CCNGG 2 cut(s) 453, 499
SfcI CTRYAG 2 cut(s) 99, 690
Sse9I AATT 2 cut(s) 319, 370
SsiI CCGC 4 cut(s) 324, 531, 614, 729
SspMI CTAG 5 cut(s) 35, 86, 260, 480, 590
StyD4I CCNGG 2 cut(s) 451, 497
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 2 cut(s) 196, 691
TaiI ACGT 2 cut(s) 149, 490
TaqI TCGA 3 cut(s) 205, 518, 724
TasI AATT 2 cut(s) 319, 370
TauI GCSGC 1 cut(s) 617
TfiI GAWTC 3 cut(s) 90, 362, 721
Tru1I TTAA 1 cut(s) 680
Tru9I TTAA 1 cut(s) 680
TscAI CASTG 4 cut(s) 132, 156, 244, 333
TseFI GTSAC 1 cut(s) 147
TseI GCWGC 2 cut(s) 331, 503
Tsp45I GTSAC 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 17, 21
TspGWI ACGGA 1 cut(s) 687
TspRI CASTG 4 cut(s) 132, 156, 244, 333
Tth111I GACNNNGTC 1 cut(s) 145
XapI RAATTY 1 cut(s) 370
XcmI CCANNNNNNNNNTGG 1 cut(s) 363
XspI CTAG 5 cut(s) 35, 86, 260, 480, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.