AT2G07641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0022054
Physical Location & Seq
Reverse (-)
3389612 .. 3390726
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G07641.1

Sequence Viewer

Length: 801 bp
ATGAGCGTGTTCTTGGGCCATCATAGAAACATAGATAGGGTCGAAAACGGAACGAAAAACGAAACTTTACGACAGCTTTTTCGTACACGTTCACTTGCATCACATACACAAGTGCTCTCTGAACCGTGCAATAAGCTTTTTAGGTTATGCAATAGAAGGGAGGCAACGCTCTGGGCTTGCAGAAATGAATGGATCAGAAAGAAGGGGGCTGGATTCAATTTCCAGGCCGGGCGGGAGGTGAAGACCATAAGAGAAGATTGCCCTCCCGGCAAGGAAGAGAGGAAAAAGGCGCTTTCTCAAAGCAGAGGAGGAAGGGTGGGCAGAAGGTACCACGAGCCCTCTGTCCCACACATCTATCCAGAAGCAAGTGTAGTTCACCGGTTCCACCGAATGCTCCTATCTCTCGGCAAAGATCGTGTGAGTGTGCAGTTATGCTTCGGATGCTTCGCAATAGATCGACCCAGTTCCCGTTCTTTTCCGGTGCACTCGCTTTATATCTCCGATACACAAGGAAGGACGCGGTGGGAAGGAAGCAGCCCTAGCCTCTGTCCGGCCGATCATTCCGCTGGCATCTTGCATTCACGCCTCCGTTTGACTGCCGCTCGGGGATGTAGTTGTAGATACGTTAGTCAACGTGGGTCGTTAGCTCCACCTGTTCTCTCCTTCTACGACATGCTGTTGTTGTCGTCATATTCCATATGTCACTTAGTCATCTCTGCCTCGCTGCGGGTCAGCACCTCCGAAAGAAACGGAGGACTTCATTCAGTGACTCCGCGATCGCCCTCTGAACGATCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

30.05

Weight (kDa)

10.19

Isoelectric Point (pI)

60.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07641
rosa_chinensis RchiOBHm_MTg0498271
rosa_laevigata RLG00000000356 RLG00000000393

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 327
AccB1I GGYRCC 1 cut(s) 327
AccBSI CCGCTC 1 cut(s) 602
AccII CGCG 2 cut(s) 520, 775
AciI CCGC 6 cut(s) 232, 520, 564, 600, 727, 773
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 1 cut(s) 552
AfaI GTAC 2 cut(s) 85, 329
AfiI CCNNNNNNNGG 2 cut(s) 550, 726
AflIII ACRYGT 1 cut(s) 86
AgeI ACCGGT 1 cut(s) 378
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 3 cut(s) 76, 136, 647
AluI AGCT 3 cut(s) 76, 136, 647
Alw21I GWGCWC 2 cut(s) 117, 486
Alw44I GTGCAC 1 cut(s) 482
AlwI GGATC 1 cut(s) 200
Ama87I CYCGRG 1 cut(s) 603
AoxI GGCC 3 cut(s) 16, 225, 552
ApaLI GTGCAC 1 cut(s) 482
ApeKI GCWGC 2 cut(s) 534, 724
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
AsiGI ACCGGT 1 cut(s) 378
AsiSI GCGATCGC 1 cut(s) 779
Asp718I GGTACC 1 cut(s) 327
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 16
AsuC2I CCSGG 2 cut(s) 229, 267
AsuHPI GGTGA 2 cut(s) 250, 368
AvaI CYCGRG 1 cut(s) 603
BaeGI GKGCMC 1 cut(s) 486
BaeI ACNNNNGTAYC 2 cut(s) 613, 646
BanI GGYRCC 1 cut(s) 327
BanII GRGCYC 1 cut(s) 339
BauI CACGAG 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 2 cut(s) 117, 486
BbvI GCAGC 2 cut(s) 546, 711
BccI CCATC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 224
BcnI CCSGG 2 cut(s) 229, 267
BfaI CTAG 1 cut(s) 540
BfoI RGCGCY 1 cut(s) 293
BglI GCCNNNNNGGC 1 cut(s) 267
BisI GCNGC 3 cut(s) 535, 600, 725
BlsI GCNGC 3 cut(s) 536, 601, 726
Bme1390I CCNGG 3 cut(s) 224, 229, 267
BmeT110I CYCGRG 1 cut(s) 603
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 2 cut(s) 329, 383
BmrFI CCNGG 3 cut(s) 224, 229, 267
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 3 cut(s) 107, 431, 579
BmuI ACTGGG 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 248
BpuMI CCSGG 2 cut(s) 229, 267
BsaWI WCCGGW 2 cut(s) 378, 478
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 2 cut(s) 550, 726
Bse118I RCCGGY 1 cut(s) 378
Bse1I ACTGG 1 cut(s) 462
BseBI CCWGG 1 cut(s) 224
BseGI GGATG 2 cut(s) 446, 614
BseLI CCNNNNNNNGG 2 cut(s) 550, 726
BseNI ACTGG 1 cut(s) 462
BseRI GAGGAG 1 cut(s) 321
BseSI GKGCMC 1 cut(s) 486
BseX3I CGGCCG 1 cut(s) 552
BseXI GCAGC 2 cut(s) 546, 711
BsgI GTGCAG 1 cut(s) 446
Bsh1236I CGCG 2 cut(s) 520, 775
Bsh1285I CGRYCG 2 cut(s) 555, 779
BshFI GGCC 3 cut(s) 18, 227, 554
BshNI GGYRCC 1 cut(s) 327
BshTI ACCGGT 1 cut(s) 378
BsiEI CGRYCG 2 cut(s) 555, 779
BsiHKAI GWGCWC 2 cut(s) 117, 486
BsiHKCI CYCGRG 1 cut(s) 603
BsiSI CCGG 5 cut(s) 228, 267, 379, 479, 551
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 2 cut(s) 550, 726
BsmFI GGGAC 1 cut(s) 329
BsmI GAATGC 2 cut(s) 396, 577
BsnI GGCC 3 cut(s) 18, 227, 554
BsoBI CYCGRG 1 cut(s) 603
Bsp1286I GDGCHC 3 cut(s) 117, 339, 486
Bsp143I GATC 6 cut(s) 192, 412, 454, 556, 776, 791
BspACI CCGC 6 cut(s) 232, 520, 564, 600, 727, 773
BspANI GGCC 3 cut(s) 18, 227, 554
BspFNI CGCG 2 cut(s) 520, 775
BspLI GGNNCC 2 cut(s) 329, 383
BspPI GGATC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 327
BsrBI CCGCTC 1 cut(s) 602
BsrFI RCCGGY 1 cut(s) 378
BsrI ACTGG 1 cut(s) 462
BssAI RCCGGY 1 cut(s) 378
BssMI GATC 6 cut(s) 192, 412, 454, 556, 776, 791
BssSI CACGAG 1 cut(s) 332
Bst2BI CACGAG 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 178, 568
BstDEI CTNAG 1 cut(s) 706
BstF5I GGATG 2 cut(s) 446, 614
BstFNI CGCG 2 cut(s) 520, 775
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 6 cut(s) 195, 415, 457, 559, 779, 794
BstMBI GATC 6 cut(s) 192, 412, 454, 556, 776, 791
BstMCI CGRYCG 2 cut(s) 555, 779
BstMWI GCNNNNNNNGC 3 cut(s) 267, 441, 540
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 676
BstSCI CCNGG 3 cut(s) 222, 227, 265
BstSLI GKGCMC 1 cut(s) 486
BstUI CGCG 2 cut(s) 520, 775
BstV1I GCAGC 2 cut(s) 546, 711
BstV2I GAAGAC 1 cut(s) 248
BstZI CGGCCG 1 cut(s) 552
BsuRI GGCC 3 cut(s) 18, 227, 554
BtsCI GGATG 2 cut(s) 446, 614
BtsIMutI CAGTG 1 cut(s) 771
Cac8I GCNNGC 2 cut(s) 178, 568
CfoI GCGC 1 cut(s) 292
Cfr10I RCCGGY 1 cut(s) 378
Cfr13I GGNCC 1 cut(s) 16
CseI GACGC 1 cut(s) 526
Csp6I GTAC 2 cut(s) 84, 328
CspAI ACCGGT 1 cut(s) 378
CviAII CATG 1 cut(s) 673
CviQI GTAC 2 cut(s) 84, 328
DdeI CTNAG 1 cut(s) 706
DpnI GATC 6 cut(s) 194, 414, 456, 558, 778, 793
DpnII GATC 6 cut(s) 192, 412, 454, 556, 776, 791
EaeI YGGCCR 1 cut(s) 552
EagI CGGCCG 1 cut(s) 552
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EclXI CGGCCG 1 cut(s) 552
Eco24I GRGCYC 1 cut(s) 339
Eco52I CGGCCG 1 cut(s) 552
Eco88I CYCGRG 1 cut(s) 603
EcoRII CCWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 339
FaeI CATG 1 cut(s) 676
FaqI GGGAC 1 cut(s) 329
FatI CATG 1 cut(s) 672
FauI CCCGC 2 cut(s) 225, 720
FauNDI CATATG 1 cut(s) 698
Fnu4HI GCNGC 3 cut(s) 535, 600, 725
FokI GGATG 2 cut(s) 453, 621
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 3 cut(s) 535, 600, 725
FspBI CTAG 1 cut(s) 540
GlaI GCGC 1 cut(s) 291
GluI GCNGC 3 cut(s) 535, 600, 725
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 3 cut(s) 18, 227, 554
HapII CCGG 5 cut(s) 228, 267, 379, 479, 551
HgaI GACGC 1 cut(s) 526
HhaI GCGC 1 cut(s) 292
Hin1II CATG 1 cut(s) 676
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HincII GTYRAC 1 cut(s) 632
HindII GTYRAC 1 cut(s) 632
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 2 cut(s) 213, 769
HpaII CCGG 5 cut(s) 228, 267, 379, 479, 551
HphI GGTGA 2 cut(s) 250, 368
Hpy166II GTNNAC 5 cut(s) 86, 92, 376, 484, 632
Hpy188I TCNGA 7 cut(s) 121, 197, 440, 502, 742, 787, 796
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 5 cut(s) 86, 92, 376, 484, 632
HpyAV CCTTC 7 cut(s) 150, 196, 306, 318, 507, 521, 673
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 3 cut(s) 88, 624, 634
HpyCH4V TGCA 7 cut(s) 98, 129, 150, 180, 427, 484, 577
HpyF10VI GCNNNNNNNGC 3 cut(s) 267, 441, 540
HpyF3I CTNAG 1 cut(s) 706
HpySE526I ACGT 3 cut(s) 88, 624, 634
Hsp92II CATG 1 cut(s) 676
HspAI GCGC 1 cut(s) 290
KpnI GGTACC 1 cut(s) 331
Kzo9I GATC 6 cut(s) 192, 412, 454, 556, 776, 791
LmnI GCTCC 2 cut(s) 399, 652
Lsp1109I GCAGC 2 cut(s) 546, 711
LweI GCATC 3 cut(s) 107, 431, 579
MaeI CTAG 1 cut(s) 540
MaeII ACGT 3 cut(s) 88, 624, 634
MaeIII GTNAC 2 cut(s) 701, 766
MalI GATC 6 cut(s) 194, 414, 456, 558, 778, 793
MbiI CCGCTC 1 cut(s) 602
MboI GATC 6 cut(s) 192, 412, 454, 556, 776, 791
MboII GAAGA 3 cut(s) 253, 266, 287
MhlI GDGCHC 3 cut(s) 117, 339, 486
MluCI AATT 1 cut(s) 217
MlyI GAGTC 1 cut(s) 763
MspA1I CMGCKG 1 cut(s) 566
MspI CCGG 5 cut(s) 228, 267, 379, 479, 551
MspR9I CCNGG 3 cut(s) 224, 229, 267
Mva1269I GAATGC 2 cut(s) 396, 577
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 2 cut(s) 520, 775
MwoI GCNNNNNNNGC 3 cut(s) 267, 441, 540
NciI CCSGG 2 cut(s) 229, 267
NdeI CATATG 1 cut(s) 698
NdeII GATC 6 cut(s) 192, 412, 454, 556, 776, 791
NlaIII CATG 1 cut(s) 676
NlaIV GGNNCC 2 cut(s) 329, 383
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 701, 766
NspI RCATGY 1 cut(s) 676
PctI GAATGC 2 cut(s) 396, 577
PfeI GAWTC 1 cut(s) 213
PinAI ACCGGT 1 cut(s) 378
PkrI GCNGC 3 cut(s) 536, 601, 726
Ple19I CGATCG 1 cut(s) 779
PleI GAGTC 1 cut(s) 763
PpsI GAGTC 1 cut(s) 763
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 329, 383
PspPI GGNCC 1 cut(s) 16
PvuI CGATCG 1 cut(s) 779
RgaI GCGATCGC 1 cut(s) 779
RsaI GTAC 2 cut(s) 85, 329
RsaNI GTAC 2 cut(s) 84, 328
SatI GCNGC 3 cut(s) 535, 600, 725
Sau3AI GATC 6 cut(s) 192, 412, 454, 556, 776, 791
Sau96I GGNCC 1 cut(s) 16
SchI GAGTC 1 cut(s) 763
ScrFI CCNGG 3 cut(s) 224, 229, 267
SduI GDGCHC 3 cut(s) 117, 339, 486
SfaAI GCGATCGC 1 cut(s) 779
SfaNI GCATC 3 cut(s) 107, 431, 579
SgfI GCGATCGC 1 cut(s) 779
Sse9I AATT 1 cut(s) 217
SsiI CCGC 6 cut(s) 232, 520, 564, 600, 727, 773
SspMI CTAG 1 cut(s) 540
StyD4I CCNGG 3 cut(s) 222, 227, 265
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 3 cut(s) 91, 627, 637
TaqI TCGA 2 cut(s) 42, 457
TasI AATT 1 cut(s) 217
TauI GCSGC 1 cut(s) 602
TfiI GAWTC 1 cut(s) 213
TscAI CASTG 1 cut(s) 771
TseFI GTSAC 2 cut(s) 701, 766
TseI GCWGC 2 cut(s) 534, 724
Tsp45I GTSAC 2 cut(s) 701, 766
TspDTI ATGAA 2 cut(s) 201, 749
TspGWI ACGGA 3 cut(s) 63, 578, 765
TspRI CASTG 1 cut(s) 771
VneI GTGCAC 1 cut(s) 482
XceI RCATGY 1 cut(s) 676
XspI CTAG 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.