RLG00000000393

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0022054
Physical Location & Seq
Forward (+)
807849 .. 809084
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000393

Sequence Viewer

Length: 762 bp
ATGGTACCTCGCAATTCAAAAGTCTCTCTACGGCTGAAGAATGAGCGTGTTCTTGGGCATGATGGCCAAGAACACGCTCATTCTTCAGCCTTTCCCGAGGCGTTGGAAATCCAGACCGGCTCAGAGAATCACAGGTCCTTTGGACCCTTCGTTTCGCCAACAAAGAAGTCATCCTTGATGATATCCCATTCCTTCCCTGCCGAGCCGCCTCTCTTCGCCATTCGAAGTACTACCTCTGCCTTCCCTTTCTATAACACACCCAGGCGCCCTCACTGCTCAAGTAAGTGCGCGACTCCGTATGAGGACCTCCTTCCCTTCTGCCCACTCTCCGTTCACGCGGTTCTCAAAGCAGAGGAGGAAGGGTGGGCAGCAGGTACCACGAGCCCTCTGTCCCACACATCTATCCAGAAGCAAATCGACCCAGTTCCCGTTCTTTTCCGGTGCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGGTGGGAAGGAAGCAGCCCTAGCCTCTGTCCGGCCGATCATTCCGCTGGCATCTTGCATTCACGCCTTCCGTTTGACTGCCACTCGGGGATGTAGTTGTAGATACGTTAGTCTTAGTGGGTCGTTGGCTCCACCTGTTATCTCCTTCTACGACATGCTGTTGTCGTCGCCATATTCCATATGTCACTTAGTCATCTCTGCCTCGCTGCGGGGCAGCACCTCCGAAAGAAACGGAGGACTTCATTCAGTGACTCCGCGATCGCCCTCTGAACGATCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

27.54

Weight (kDa)

9.22

Isoelectric Point (pI)

63.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07641
rosa_chinensis RchiOBHm_MTg0498271
rosa_laevigata RLG00000000356 RLG00000000393

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 362
Acc65I GGTACC 2 cut(s) 4, 374
AccB1I GGYRCC 3 cut(s) 4, 264, 374
AccII CGCG 4 cut(s) 290, 338, 480, 736
AciI CCGC 6 cut(s) 206, 338, 480, 524, 688, 734
AcoI YGGCCR 2 cut(s) 64, 512
AcuI CTGAAG 2 cut(s) 56, 69
AcyI GRCGYC 1 cut(s) 265
AfaI GTAC 3 cut(s) 6, 229, 376
AfiI CCNNNNNNNGG 2 cut(s) 510, 687
AgsI TTSAA 1 cut(s) 18
AjnI CCWGG 1 cut(s) 260
Alw21I GWGCWC 1 cut(s) 446
Alw26I GTCTC 1 cut(s) 28
Alw44I GTGCAC 1 cut(s) 442
Ama87I CYCGRG 2 cut(s) 95, 564
AoxI GGCC 2 cut(s) 64, 512
ApaLI GTGCAC 1 cut(s) 442
ApeKI GCWGC 4 cut(s) 368, 494, 685, 693
AsiSI GCGATCGC 1 cut(s) 740
Asp718I GGTACC 2 cut(s) 4, 374
AspLEI GCGC 2 cut(s) 267, 290
AspS9I GGNCC 3 cut(s) 135, 143, 304
AsuII TTCGAA 1 cut(s) 223
AvaI CYCGRG 2 cut(s) 95, 564
AvaII GGWCC 3 cut(s) 135, 143, 304
BaeGI GKGCMC 1 cut(s) 446
BaeI ACNNNNGTAYC 2 cut(s) 574, 607
BalI TGGCCA 1 cut(s) 66
BanI GGYRCC 3 cut(s) 4, 264, 374
BanII GRGCYC 1 cut(s) 386
BauI CACGAG 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 446
BbvI GCAGC 4 cut(s) 380, 506, 672, 705
BccI CCATC 1 cut(s) 56
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 1 cut(s) 500
BfoI RGCGCY 1 cut(s) 268
BfuAI ACCTGC 1 cut(s) 362
BisI GCNGC 5 cut(s) 206, 369, 495, 686, 694
BlsI GCNGC 5 cut(s) 207, 370, 496, 687, 695
BmcAI AGTACT 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 3 cut(s) 135, 143, 304
BmeT110I CYCGRG 2 cut(s) 95, 564
BmgT120I GGNCC 3 cut(s) 135, 143, 304
BmiI GGNNCC 5 cut(s) 6, 145, 266, 376, 609
BmrFI CCNGG 1 cut(s) 262
BmrI ACTGGG 1 cut(s) 416
BmsI GCATC 1 cut(s) 539
BmuI ACTGGG 1 cut(s) 416
Bpu14I TTCGAA 1 cut(s) 223
BpuEI CTTGAG 1 cut(s) 262
BsaHI GRCGYC 1 cut(s) 265
BsaJI CCNNGG 2 cut(s) 96, 260
BsaWI WCCGGW 1 cut(s) 438
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 2 cut(s) 510, 687
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 422
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 2 cut(s) 96, 260
BseGI GGATG 2 cut(s) 170, 575
BseLI CCNNNNNNNGG 2 cut(s) 510, 687
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 1 cut(s) 446
BseX3I CGGCCG 1 cut(s) 512
BseXI GCAGC 4 cut(s) 380, 506, 672, 705
Bsh1236I CGCG 4 cut(s) 290, 338, 480, 736
Bsh1285I CGRYCG 2 cut(s) 515, 740
BshFI GGCC 2 cut(s) 66, 514
BshNI GGYRCC 3 cut(s) 4, 264, 374
BsiEI CGRYCG 2 cut(s) 515, 740
BsiHKAI GWGCWC 1 cut(s) 446
BsiHKCI CYCGRG 2 cut(s) 95, 564
BsiSI CCGG 3 cut(s) 117, 439, 511
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 2 cut(s) 510, 687
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 537
BsnI GGCC 2 cut(s) 66, 514
BsoBI CYCGRG 2 cut(s) 95, 564
Bsp119I TTCGAA 1 cut(s) 223
Bsp1286I GDGCHC 2 cut(s) 386, 446
Bsp143I GATC 3 cut(s) 516, 737, 752
BspACI CCGC 6 cut(s) 206, 338, 480, 524, 688, 734
BspANI GGCC 2 cut(s) 66, 514
BspCNI CTCAG 1 cut(s) 134
BspFNI CGCG 4 cut(s) 290, 338, 480, 736
BspLI GGNNCC 5 cut(s) 6, 145, 266, 376, 609
BspMI ACCTGC 1 cut(s) 362
BspT104I TTCGAA 1 cut(s) 223
BspT107I GGYRCC 3 cut(s) 4, 264, 374
BsrFI RCCGGY 1 cut(s) 116
BsrI ACTGG 1 cut(s) 422
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 96, 260
BssMI GATC 3 cut(s) 516, 737, 752
BssNI GRCGYC 1 cut(s) 265
BssSI CACGAG 1 cut(s) 379
Bst2BI CACGAG 1 cut(s) 379
Bst2UI CCWGG 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 265
BstBI TTCGAA 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 528
BstDEI CTNAG 3 cut(s) 121, 593, 667
BstF5I GGATG 2 cut(s) 170, 575
BstFNI CGCG 4 cut(s) 290, 338, 480, 736
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 2 cut(s) 267, 290
BstKTI GATC 3 cut(s) 519, 740, 755
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 3 cut(s) 516, 737, 752
BstMCI CGRYCG 2 cut(s) 515, 740
BstMWI GCNNNNNNNGC 2 cut(s) 273, 500
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 637
BstSCI CCNGG 1 cut(s) 260
BstSLI GKGCMC 1 cut(s) 446
BstUI CGCG 4 cut(s) 290, 338, 480, 736
BstV1I GCAGC 4 cut(s) 380, 506, 672, 705
BstZI CGGCCG 1 cut(s) 512
BsuRI GGCC 2 cut(s) 66, 514
BtsCI GGATG 2 cut(s) 170, 575
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 271, 732
BveI ACCTGC 1 cut(s) 362
Cac8I GCNNGC 1 cut(s) 528
CfoI GCGC 2 cut(s) 267, 290
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 3 cut(s) 135, 143, 304
CseI GACGC 1 cut(s) 486
Csp6I GTAC 3 cut(s) 5, 228, 375
CviAII CATG 2 cut(s) 59, 634
CviQI GTAC 3 cut(s) 5, 228, 375
DdeI CTNAG 3 cut(s) 121, 593, 667
DinI GGCGCC 1 cut(s) 266
DpnI GATC 3 cut(s) 518, 739, 754
DpnII GATC 3 cut(s) 516, 737, 752
EaeI YGGCCR 2 cut(s) 64, 512
EagI CGGCCG 1 cut(s) 512
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
EclXI CGGCCG 1 cut(s) 512
Eco24I GRGCYC 1 cut(s) 386
Eco32I GATATC 1 cut(s) 183
Eco47I GGWCC 3 cut(s) 135, 143, 304
Eco52I CGGCCG 1 cut(s) 512
Eco57I CTGAAG 2 cut(s) 56, 69
Eco88I CYCGRG 2 cut(s) 95, 564
EcoO109I RGGNCCY 2 cut(s) 135, 304
EcoRII CCWGG 1 cut(s) 260
EcoRV GATATC 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 386
EgeI GGCGCC 1 cut(s) 266
EheI GGCGCC 1 cut(s) 266
FaeI CATG 2 cut(s) 62, 637
FaiI YATR 8 cut(s) 60, 252, 300, 455, 635, 652, 659, 661
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FaqI GGGAC 1 cut(s) 376
FatI CATG 2 cut(s) 58, 633
FauI CCCGC 1 cut(s) 681
FauNDI CATATG 1 cut(s) 659
Fnu4HI GCNGC 5 cut(s) 206, 369, 495, 686, 694
FokI GGATG 2 cut(s) 157, 582
FriOI GRGCYC 1 cut(s) 386
Fsp4HI GCNGC 5 cut(s) 206, 369, 495, 686, 694
FspBI CTAG 1 cut(s) 500
GlaI GCGC 2 cut(s) 266, 289
GluI GCNGC 5 cut(s) 206, 369, 495, 686, 694
HaeII RGCGCY 1 cut(s) 268
HaeIII GGCC 2 cut(s) 66, 514
HapII CCGG 3 cut(s) 117, 439, 511
HgaI GACGC 1 cut(s) 486
HhaI GCGC 2 cut(s) 267, 290
Hin1I GRCGYC 1 cut(s) 265
Hin1II CATG 2 cut(s) 62, 637
Hin6I GCGC 2 cut(s) 265, 288
HinP1I GCGC 2 cut(s) 265, 288
HinfI GANTC 3 cut(s) 127, 292, 730
HpaII CCGG 3 cut(s) 117, 439, 511
Hpy166II GTNNAC 2 cut(s) 334, 444
Hpy188I TCNGA 5 cut(s) 124, 462, 703, 748, 757
Hpy188III TCNNGA 3 cut(s) 95, 112, 406
Hpy8I GTNNAC 2 cut(s) 334, 444
Hpy99I CGWCG 1 cut(s) 649
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 2 cut(s) 444, 537
HpyF10VI GCNNNNNNNGC 2 cut(s) 273, 500
HpyF3I CTNAG 3 cut(s) 121, 593, 667
HpySE526I ACGT 1 cut(s) 585
Hsp92I GRCGYC 1 cut(s) 265
Hsp92II CATG 2 cut(s) 62, 637
HspAI GCGC 2 cut(s) 265, 288
KasI GGCGCC 1 cut(s) 264
KpnI GGTACC 2 cut(s) 8, 378
Kzo9I GATC 3 cut(s) 516, 737, 752
LmnI GCTCC 1 cut(s) 613
Lsp1109I GCAGC 4 cut(s) 380, 506, 672, 705
LweI GCATC 1 cut(s) 539
MaeI CTAG 1 cut(s) 500
MaeII ACGT 1 cut(s) 585
MaeIII GTNAC 2 cut(s) 662, 727
MalI GATC 3 cut(s) 518, 739, 754
MboI GATC 3 cut(s) 516, 737, 752
MboII GAAGA 3 cut(s) 49, 75, 205
MhlI GDGCHC 2 cut(s) 386, 446
MlsI TGGCCA 1 cut(s) 66
MluCI AATT 1 cut(s) 13
MluNI TGGCCA 1 cut(s) 66
Mly113I GGCGCC 1 cut(s) 265
MlyI GAGTC 2 cut(s) 286, 724
MmeI TCCRAC 2 cut(s) 84, 485
Mox20I TGGCCA 1 cut(s) 66
MscI TGGCCA 1 cut(s) 66
Msp20I TGGCCA 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 526
MspI CCGG 3 cut(s) 117, 439, 511
MspR9I CCNGG 1 cut(s) 262
Mva1269I GAATGC 1 cut(s) 537
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 4 cut(s) 290, 338, 480, 736
MwoI GCNNNNNNNGC 2 cut(s) 273, 500
NarI GGCGCC 1 cut(s) 265
NdeI CATATG 1 cut(s) 659
NdeII GATC 3 cut(s) 516, 737, 752
NlaIII CATG 2 cut(s) 62, 637
NlaIV GGNNCC 5 cut(s) 6, 145, 266, 376, 609
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 2 cut(s) 662, 727
NspI RCATGY 1 cut(s) 637
NspV TTCGAA 1 cut(s) 223
PctI GAATGC 1 cut(s) 537
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 5 cut(s) 207, 370, 496, 687, 695
Ple19I CGATCG 1 cut(s) 740
PleI GAGTC 2 cut(s) 286, 724
PluTI GGCGCC 1 cut(s) 268
PpsI GAGTC 2 cut(s) 286, 724
PpuMI RGGWCCY 2 cut(s) 135, 304
Psp5II RGGWCCY 2 cut(s) 135, 304
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 5 cut(s) 6, 145, 266, 376, 609
PspPI GGNCC 3 cut(s) 135, 143, 304
PspPPI RGGWCCY 2 cut(s) 135, 304
PvuI CGATCG 1 cut(s) 740
RgaI GCGATCGC 1 cut(s) 740
RsaI GTAC 3 cut(s) 6, 229, 376
RsaNI GTAC 3 cut(s) 5, 228, 375
SatI GCNGC 5 cut(s) 206, 369, 495, 686, 694
Sau3AI GATC 3 cut(s) 516, 737, 752
Sau96I GGNCC 3 cut(s) 135, 143, 304
ScaI AGTACT 1 cut(s) 229
SchI GAGTC 2 cut(s) 286, 724
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 2 cut(s) 386, 446
SetI ASST 8 cut(s) 10, 137, 236, 309, 376, 588, 616, 701
SfaAI GCGATCGC 1 cut(s) 740
SfaNI GCATC 1 cut(s) 539
SfoI GGCGCC 1 cut(s) 266
SfuI TTCGAA 1 cut(s) 223
SgfI GCGATCGC 1 cut(s) 740
SinI GGWCC 3 cut(s) 135, 143, 304
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 1 cut(s) 13
SsiI CCGC 6 cut(s) 206, 338, 480, 524, 688, 734
SspDI GGCGCC 1 cut(s) 264
SspMI CTAG 1 cut(s) 500
StyD4I CCNGG 1 cut(s) 260
TaiI ACGT 1 cut(s) 588
TaqI TCGA 2 cut(s) 223, 417
TasI AATT 1 cut(s) 13
TatI WGTACW 1 cut(s) 227
TauI GCSGC 1 cut(s) 208
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 2 cut(s) 278, 732
TseFI GTSAC 2 cut(s) 662, 727
TseI GCWGC 4 cut(s) 368, 494, 685, 693
Tsp45I GTSAC 2 cut(s) 662, 727
TspDTI ATGAA 1 cut(s) 710
TspGWI ACGGA 4 cut(s) 285, 319, 539, 726
TspRI CASTG 2 cut(s) 278, 732
VneI GTGCAC 1 cut(s) 442
VpaK11BI GGWCC 3 cut(s) 135, 143, 304
XceI RCATGY 1 cut(s) 637
XspI CTAG 1 cut(s) 500
ZrmI AGTACT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.