RLG00000000356

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0022054
Physical Location & Seq
Reverse (-)
695099 .. 696294
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000356

Sequence Viewer

Length: 987 bp
ATGAGCGTGTTCTTGGGCCATCATAGAAACATAGATAGGGTCGACGACGGAACGAACAACGAAACTTTACGACAGCTTTTTCGTACACGTTCACTTGCATCACATACACAAGTGCTCTCTGAACCGTGCAATAAGCGTAACGTATTGAAAGGGATGGAAAGCGTTTCCATAGGAGCCCAACCTCCCTTTTTGCTTTGCGACCTCATCACTTCAATTCAAGCGCAAACAAATTTCTTTCTTAGTGGAGGTGAAGGCCATAAGAGAAGATTGCCCTCCCGAGTTGGGAATAAAATAAAAAGGTGCTGTCATCTATCTCGACCAGTTTCCCGAGGCGTTGGAAATCCAGACCGGCTCAGAGAATCACAGGTCCTTTGGACCCTTCGTTTCGCCAACAAAGAAGTCATCCTTGATGATATCCCATTCCTTCCCTGCCGAGCCGCCTCTCTTCGCCATTCGAATGCGCGACTCCGTATGAGGACCTCCTTCCCTTCTGCCCACTCTCCGTTCACGCGGTTCTCAAAGCAGAGGAGGAAGGGTGGGCAGCAGGTACCACGAGCCCTCTGTCCCACACATCTATCCAGAAGCAAGTGTAGTTCACCGGTTCCACCGAATGCTCCTATCTCTCGGCAAAGATATCGTATCGACCCAGTTCCCGTTCTTTTCCGGTGCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGGTGGGAAGGAAGCAGCCCTAGCCTCTGTCCGGCCGATCATTCCGCTGGCATCTTGCATTCACGCCTTCCGTTTGACTGCCACTCGGGGATGTAGTTGTAGATACGTTAGTCTTAGTGGGTCGTTGGCTCCACCTGTTATCTCCTTCTACGACATGCTGTTGTCGTCGCCATATTCCATATGTCACTTAGTCATCTCTGCCTCGCTGCGGGGCAGCACCTCCGAAAGAAACGGAGGACTTCATTCAGTGACTCCGCGATCGCCCTCTGAACGATCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

36.47

Weight (kDa)

10.99

Isoelectric Point (pI)

65.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07641
rosa_chinensis RchiOBHm_MTg0498271
rosa_laevigata RLG00000000356 RLG00000000393

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 535
Acc65I GGTACC 1 cut(s) 547
AccB1I GGYRCC 1 cut(s) 547
AccI GTMKAC 1 cut(s) 42
AccII CGCG 4 cut(s) 463, 511, 705, 961
AciI CCGC 6 cut(s) 438, 511, 705, 749, 913, 959
AcoI YGGCCR 1 cut(s) 737
AcsI RAATTY 1 cut(s) 229
AfaI GTAC 2 cut(s) 85, 549
AfiI CCNNNNNNNGG 3 cut(s) 282, 735, 912
AflIII ACRYGT 1 cut(s) 86
AgeI ACCGGT 1 cut(s) 598
AgsI TTSAA 3 cut(s) 148, 213, 218
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw21I GWGCWC 2 cut(s) 117, 671
Alw44I GTGCAC 1 cut(s) 667
Ama87I CYCGRG 3 cut(s) 276, 327, 789
AoxI GGCC 3 cut(s) 16, 253, 737
ApaLI GTGCAC 1 cut(s) 667
ApeKI GCWGC 4 cut(s) 541, 719, 910, 918
ApoI RAATTY 1 cut(s) 229
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
AsiGI ACCGGT 1 cut(s) 598
AsiSI GCGATCGC 1 cut(s) 965
Asp718I GGTACC 1 cut(s) 547
AspLEI GCGC 2 cut(s) 223, 463
AspS9I GGNCC 4 cut(s) 16, 367, 375, 477
AsuHPI GGTGA 2 cut(s) 260, 588
AsuII TTCGAA 1 cut(s) 455
AvaI CYCGRG 3 cut(s) 276, 327, 789
AvaII GGWCC 3 cut(s) 367, 375, 477
BaeGI GKGCMC 1 cut(s) 671
BaeI ACNNNNGTAYC 2 cut(s) 799, 832
BanI GGYRCC 1 cut(s) 547
BanII GRGCYC 2 cut(s) 178, 559
BauI CACGAG 1 cut(s) 552
Bbv12I GWGCWC 2 cut(s) 117, 671
BbvI GCAGC 4 cut(s) 553, 731, 897, 930
BccI CCATC 2 cut(s) 27, 148
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BfaI CTAG 1 cut(s) 725
BfuAI ACCTGC 1 cut(s) 535
BisI GCNGC 5 cut(s) 438, 542, 720, 911, 919
BlsI GCNGC 5 cut(s) 439, 543, 721, 912, 920
Bme18I GGWCC 3 cut(s) 367, 375, 477
BmeT110I CYCGRG 3 cut(s) 276, 327, 789
BmgT120I GGNCC 4 cut(s) 16, 367, 375, 477
BmiI GGNNCC 5 cut(s) 175, 377, 549, 603, 834
BmrI ACTGGG 1 cut(s) 641
BmsI GCATC 2 cut(s) 107, 764
BmuI ACTGGG 1 cut(s) 641
Bpu14I TTCGAA 1 cut(s) 455
BsaJI CCNNGG 1 cut(s) 328
BsaWI WCCGGW 2 cut(s) 598, 663
BsaXI ACNNNNNCTCC 2 cut(s) 520, 550
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 735, 912
Bse118I RCCGGY 2 cut(s) 348, 598
Bse1I ACTGG 2 cut(s) 320, 647
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 3 cut(s) 159, 402, 800
BseLI CCNNNNNNNGG 3 cut(s) 282, 735, 912
BseMII CTCAG 1 cut(s) 367
BseNI ACTGG 2 cut(s) 320, 647
BseRI GAGGAG 1 cut(s) 541
BseSI GKGCMC 1 cut(s) 671
BseX3I CGGCCG 1 cut(s) 737
BseXI GCAGC 4 cut(s) 553, 731, 897, 930
Bsh1236I CGCG 4 cut(s) 463, 511, 705, 961
Bsh1285I CGRYCG 2 cut(s) 740, 965
BshFI GGCC 3 cut(s) 18, 255, 739
BshNI GGYRCC 1 cut(s) 547
BshTI ACCGGT 1 cut(s) 598
BsiEI CGRYCG 2 cut(s) 740, 965
BsiHKAI GWGCWC 2 cut(s) 117, 671
BsiHKCI CYCGRG 3 cut(s) 276, 327, 789
BsiSI CCGG 4 cut(s) 349, 599, 664, 736
BslFI GGGAC 1 cut(s) 549
BslI CCNNNNNNNGG 3 cut(s) 282, 735, 912
BsmFI GGGAC 1 cut(s) 549
BsmI GAATGC 3 cut(s) 463, 616, 762
BsnI GGCC 3 cut(s) 18, 255, 739
BsoBI CYCGRG 3 cut(s) 276, 327, 789
Bsp119I TTCGAA 1 cut(s) 455
Bsp1286I GDGCHC 4 cut(s) 117, 178, 559, 671
Bsp143I GATC 3 cut(s) 741, 962, 977
BspACI CCGC 6 cut(s) 438, 511, 705, 749, 913, 959
BspANI GGCC 3 cut(s) 18, 255, 739
BspCNI CTCAG 1 cut(s) 366
BspFNI CGCG 4 cut(s) 463, 511, 705, 961
BspLI GGNNCC 5 cut(s) 175, 377, 549, 603, 834
BspMI ACCTGC 1 cut(s) 535
BspT104I TTCGAA 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 547
BsrFI RCCGGY 2 cut(s) 348, 598
BsrI ACTGG 2 cut(s) 320, 647
BssAI RCCGGY 2 cut(s) 348, 598
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 3 cut(s) 741, 962, 977
BssSI CACGAG 1 cut(s) 552
Bst2BI CACGAG 1 cut(s) 552
Bst4CI ACNGT 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 450
BstBI TTCGAA 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 753
BstDEI CTNAG 4 cut(s) 239, 353, 818, 892
BstF5I GGATG 3 cut(s) 159, 402, 800
BstFNI CGCG 4 cut(s) 463, 511, 705, 961
BstHHI GCGC 2 cut(s) 223, 463
BstKTI GATC 3 cut(s) 744, 965, 980
BstMBI GATC 3 cut(s) 741, 962, 977
BstMCI CGRYCG 2 cut(s) 740, 965
BstMWI GCNNNNNNNGC 1 cut(s) 725
BstNSI RCATGY 1 cut(s) 862
BstSLI GKGCMC 1 cut(s) 671
BstUI CGCG 4 cut(s) 463, 511, 705, 961
BstV1I GCAGC 4 cut(s) 553, 731, 897, 930
BstZI CGGCCG 1 cut(s) 737
BsuRI GGCC 3 cut(s) 18, 255, 739
BtsCI GGATG 3 cut(s) 159, 402, 800
BtsIMutI CAGTG 1 cut(s) 957
BveI ACCTGC 1 cut(s) 535
Cac8I GCNNGC 1 cut(s) 753
CfoI GCGC 2 cut(s) 223, 463
Cfr10I RCCGGY 2 cut(s) 348, 598
Cfr13I GGNCC 4 cut(s) 16, 367, 375, 477
CseI GACGC 1 cut(s) 711
Csp6I GTAC 2 cut(s) 84, 548
CspAI ACCGGT 1 cut(s) 598
CviAII CATG 1 cut(s) 859
CviQI GTAC 2 cut(s) 84, 548
DdeI CTNAG 4 cut(s) 239, 353, 818, 892
DpnI GATC 3 cut(s) 743, 964, 979
DpnII GATC 3 cut(s) 741, 962, 977
EaeI YGGCCR 1 cut(s) 737
EagI CGGCCG 1 cut(s) 737
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
EclXI CGGCCG 1 cut(s) 737
Eco24I GRGCYC 2 cut(s) 178, 559
Eco32I GATATC 2 cut(s) 415, 635
Eco47I GGWCC 3 cut(s) 367, 375, 477
Eco52I CGGCCG 1 cut(s) 737
Eco88I CYCGRG 3 cut(s) 276, 327, 789
EcoO109I RGGNCCY 2 cut(s) 367, 477
EcoRV GATATC 2 cut(s) 415, 635
EcoT38I GRGCYC 2 cut(s) 178, 559
FaeI CATG 1 cut(s) 862
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 1 cut(s) 549
FatI CATG 1 cut(s) 858
FauI CCCGC 1 cut(s) 906
FauNDI CATATG 1 cut(s) 884
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 5 cut(s) 438, 542, 720, 911, 919
FokI GGATG 3 cut(s) 166, 389, 807
FriOI GRGCYC 2 cut(s) 178, 559
Fsp4HI GCNGC 5 cut(s) 438, 542, 720, 911, 919
FspBI CTAG 1 cut(s) 725
GlaI GCGC 2 cut(s) 222, 462
GluI GCNGC 5 cut(s) 438, 542, 720, 911, 919
HaeIII GGCC 3 cut(s) 18, 255, 739
HapII CCGG 4 cut(s) 349, 599, 664, 736
HgaI GACGC 1 cut(s) 711
HhaI GCGC 2 cut(s) 223, 463
Hin1II CATG 1 cut(s) 862
Hin6I GCGC 2 cut(s) 221, 461
HinP1I GCGC 2 cut(s) 221, 461
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 3 cut(s) 359, 465, 955
HpaII CCGG 4 cut(s) 349, 599, 664, 736
HphI GGTGA 2 cut(s) 260, 588
Hpy166II GTNNAC 6 cut(s) 43, 86, 92, 507, 596, 669
Hpy188I TCNGA 6 cut(s) 121, 356, 687, 928, 973, 982
Hpy188III TCNNGA 5 cut(s) 276, 315, 327, 344, 579
Hpy8I GTNNAC 6 cut(s) 43, 86, 92, 507, 596, 669
Hpy99I CGWCG 3 cut(s) 47, 50, 874
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 3 cut(s) 88, 141, 810
HpyCH4V TGCA 4 cut(s) 98, 129, 669, 762
HpyF10VI GCNNNNNNNGC 1 cut(s) 725
HpyF3I CTNAG 4 cut(s) 239, 353, 818, 892
HpySE526I ACGT 3 cut(s) 88, 141, 810
Hsp92II CATG 1 cut(s) 862
HspAI GCGC 2 cut(s) 221, 461
KpnI GGTACC 1 cut(s) 551
Kzo9I GATC 3 cut(s) 741, 962, 977
LmnI GCTCC 3 cut(s) 173, 619, 838
Lsp1109I GCAGC 4 cut(s) 553, 731, 897, 930
LweI GCATC 2 cut(s) 107, 764
MaeI CTAG 1 cut(s) 725
MaeII ACGT 3 cut(s) 88, 141, 810
MaeIII GTNAC 3 cut(s) 137, 887, 952
MalI GATC 3 cut(s) 743, 964, 979
MboI GATC 3 cut(s) 741, 962, 977
MboII GAAGA 2 cut(s) 276, 437
MhlI GDGCHC 4 cut(s) 117, 178, 559, 671
MluCI AATT 2 cut(s) 213, 229
MlyI GAGTC 2 cut(s) 459, 949
MmeI TCCRAC 2 cut(s) 316, 710
MslI CAYNNNNRTG 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 751
MspI CCGG 4 cut(s) 349, 599, 664, 736
Mva1269I GAATGC 3 cut(s) 463, 616, 762
MvnI CGCG 4 cut(s) 463, 511, 705, 961
MwoI GCNNNNNNNGC 1 cut(s) 725
NdeI CATATG 1 cut(s) 884
NdeII GATC 3 cut(s) 741, 962, 977
NlaIII CATG 1 cut(s) 862
NlaIV GGNNCC 5 cut(s) 175, 377, 549, 603, 834
NmeAIII GCCGAG 2 cut(s) 458, 604
NmuCI GTSAC 2 cut(s) 887, 952
NspI RCATGY 1 cut(s) 862
NspV TTCGAA 1 cut(s) 455
PctI GAATGC 3 cut(s) 463, 616, 762
PfeI GAWTC 1 cut(s) 359
PinAI ACCGGT 1 cut(s) 598
PkrI GCNGC 5 cut(s) 439, 543, 721, 912, 920
Ple19I CGATCG 1 cut(s) 965
PleI GAGTC 2 cut(s) 459, 949
PpsI GAGTC 2 cut(s) 459, 949
PpuMI RGGWCCY 2 cut(s) 367, 477
Psp5II RGGWCCY 2 cut(s) 367, 477
PspN4I GGNNCC 5 cut(s) 175, 377, 549, 603, 834
PspPI GGNCC 4 cut(s) 16, 367, 375, 477
PspPPI RGGWCCY 2 cut(s) 367, 477
PvuI CGATCG 1 cut(s) 965
RgaI GCGATCGC 1 cut(s) 965
RsaI GTAC 2 cut(s) 85, 549
RsaNI GTAC 2 cut(s) 84, 548
RseI CAYNNNNRTG 1 cut(s) 456
SalI GTCGAC 1 cut(s) 41
SatI GCNGC 5 cut(s) 438, 542, 720, 911, 919
Sau3AI GATC 3 cut(s) 741, 962, 977
Sau96I GGNCC 4 cut(s) 16, 367, 375, 477
SchI GAGTC 2 cut(s) 459, 949
SduI GDGCHC 4 cut(s) 117, 178, 559, 671
SfaAI GCGATCGC 1 cut(s) 965
SfaNI GCATC 2 cut(s) 107, 764
SfuI TTCGAA 1 cut(s) 455
SgfI GCGATCGC 1 cut(s) 965
SinI GGWCC 3 cut(s) 367, 375, 477
SmiMI CAYNNNNRTG 1 cut(s) 456
Sse9I AATT 2 cut(s) 213, 229
SsiI CCGC 6 cut(s) 438, 511, 705, 749, 913, 959
SspMI CTAG 1 cut(s) 725
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 3 cut(s) 91, 144, 813
TaqI TCGA 4 cut(s) 42, 316, 455, 642
TasI AATT 2 cut(s) 213, 229
TauI GCSGC 1 cut(s) 440
TfiI GAWTC 1 cut(s) 359
TscAI CASTG 1 cut(s) 957
TseFI GTSAC 2 cut(s) 887, 952
TseI GCWGC 4 cut(s) 541, 719, 910, 918
Tsp45I GTSAC 2 cut(s) 887, 952
TspDTI ATGAA 1 cut(s) 935
TspGWI ACGGA 5 cut(s) 63, 458, 492, 764, 951
TspRI CASTG 1 cut(s) 957
VneI GTGCAC 1 cut(s) 667
VpaK11BI GGWCC 3 cut(s) 367, 375, 477
XapI RAATTY 1 cut(s) 229
XceI RCATGY 1 cut(s) 862
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.