AT2G07785

NADH dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0020171
Physical Location & Seq
Forward (+)
3348003 .. 3348904
902 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G07785.1

Sequence Viewer

Length: 300 bp
ATGGCTTTTGTGCAACGTAGAAAGGGTCCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTCGAAATTGATTCTAAAAGAACCTATTTCACCAAGTAGTGCTAATTTTTTCCTTTTTAGAATGGCTCCAGTGGCTACATTTATGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAACATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCGGGTCGGTCTAGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012
Pfam Domains
Protein Families
NADHdh

Protein Analysis

99

Amino Acids

10.61

Weight (kDa)

9.69

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NADHdh PF00146 1 - 99 3.4e-31 NADH dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020171)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07785 ATMG01275
rosa_chinensis RchiOBHm_Chr6g0256751 RchiOBHm_MTg0498831
rosa_roxburghii Rroxscaffold_2G00119320
rosa_samantha Rh6CG178200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 281
AclWI GGATC 2 cut(s) 49, 209
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 224
AlwI GGATC 2 cut(s) 49, 209
Ama87I CYCGRG 1 cut(s) 174
AoxI GGCC 1 cut(s) 177
AspS9I GGNCC 2 cut(s) 26, 177
AsuHPI GGTGA 1 cut(s) 96
AsuII TTCGAA 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 174
AvaII GGWCC 1 cut(s) 26
BccI CCATC 1 cut(s) 65
BceAI ACGGC 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BfaI CTAG 3 cut(s) 65, 257, 291
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 174
BmgT120I GGNCC 2 cut(s) 26, 177
BmiI GGNNCC 2 cut(s) 27, 141
BpmI CTGGAG 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 143
BseLI CCNNNNNNNGG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 143
BshFI GGCC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 224
BsnI GGCC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 174
Bsp119I TTCGAA 1 cut(s) 77
Bsp143I GATC 2 cut(s) 41, 214
BspACI CCGC 1 cut(s) 281
BspANI GGCC 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 27, 141
BspPI GGATC 2 cut(s) 49, 209
BspT104I TTCGAA 1 cut(s) 77
BsrI ACTGG 1 cut(s) 143
BssMI GATC 2 cut(s) 41, 214
BstBI TTCGAA 1 cut(s) 77
BstKTI GATC 2 cut(s) 44, 217
BstMBI GATC 2 cut(s) 41, 214
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 26, 177
Csp6I GTAC 1 cut(s) 185
CviJI RGCY 5 cut(s) 5, 140, 149, 179, 229
CviKI_1 RGCY 5 cut(s) 5, 140, 149, 179, 229
CviQI GTAC 1 cut(s) 185
DpnI GATC 2 cut(s) 43, 216
DpnII GATC 2 cut(s) 41, 214
Eco47I GGWCC 1 cut(s) 26
Eco88I CYCGRG 1 cut(s) 174
EcoO109I RGGNCCY 1 cut(s) 26
FaiI YATR 7 cut(s) 158, 198, 203, 224, 248, 267, 278
FauI CCCGC 1 cut(s) 274
FspBI CTAG 3 cut(s) 65, 257, 291
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 179
HinfI GANTC 1 cut(s) 85
HphI GGTGA 1 cut(s) 96
Hpy188I TCNGA 3 cut(s) 50, 214, 219
Hpy188III TCNNGA 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 16
Kzo9I GATC 2 cut(s) 41, 214
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 3 cut(s) 42, 152, 156
MaeI CTAG 3 cut(s) 65, 257, 291
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 54
MalI GATC 2 cut(s) 43, 216
MboI GATC 2 cut(s) 41, 214
MboII GAAGA 1 cut(s) 243
MflI RGATCY 1 cut(s) 214
MluCI AATT 4 cut(s) 80, 118, 270, 295
MnlI CCTC 1 cut(s) 72
MseI TTAA 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 2 cut(s) 41, 214
NlaIV GGNNCC 2 cut(s) 27, 141
NspV TTCGAA 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 1 cut(s) 85
PpuMI RGGWCCY 1 cut(s) 26
Psp5II RGGWCCY 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 27, 141
PspPI GGNCC 2 cut(s) 26, 177
PspPPI RGGWCCY 1 cut(s) 26
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SaqAI TTAA 1 cut(s) 161
Sau3AI GATC 2 cut(s) 41, 214
Sau96I GGNCC 2 cut(s) 26, 177
SetI ASST 5 cut(s) 19, 64, 100, 190, 262
SfuI TTCGAA 1 cut(s) 77
SgeI CNNG 9 cut(s) 41, 77, 120, 155, 179, 186, 188, 269, 294
SinI GGWCC 1 cut(s) 26
Sse9I AATT 4 cut(s) 80, 118, 270, 295
SsiI CCGC 1 cut(s) 281
SspMI CTAG 3 cut(s) 65, 257, 291
TaiI ACGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 77
TaqII GACCGA 1 cut(s) 276
TasI AATT 4 cut(s) 80, 118, 270, 295
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 1 cut(s) 150
TspRI CASTG 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 26
XspI CTAG 3 cut(s) 65, 257, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.