AT2G07798

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0021952
Physical Location & Seq
Forward (+)
3357619 .. 3361102
3484 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G07798.1

Sequence Viewer

Length: 936 bp
ATGGATTCCTCAGTAGGAAATGCAAAAGAAGAAAGAAAGAGCAGTGCTTTCTTAATAGTCGTGGGAGTCCGGTTCCATGGATGGATAGGAACTAAGCTAAGTCTGCTAATTGGTTGGTTGAGCACACTCCTGGGAAGGGGTAAACCGACTCTTAGGGTCTTTCGCCCGCGTTTATACTATAGTGGCACCCAATTGATTTTAGCACGAGATAGGGACCAATCTTCATCCACGGAGAAAGCAGAGGAATACCGAGAAGTAGAGAGAACTTGCTTCGCTAGGAAAGGAAAAGGGAGAGTTGGTTTCACCTTCCCTATAAGAACTAAGGCGTACCCGCGTAGAAGAAGCTACCTTCCTCAAACTCCTCTGCGCAACCCAGCCATACCAGAGAGTGCTATCACAAGGAAATTGAAATCGGCTGACCTATCGGATGAAGCAGACTGCTGCGAAAGTGGTGCCACGAGTCGAGAACTCTTAGAATTGTGCTCGTTCAGGCTCTTTAGTGCACCTAAGTGCGAAGCTGGTGCTGCAAGGGAGGATGTGGGCGGGAGAGCGCTATCTCTTCTTCCCTTGCAACTGCTGGGCACTGAAACTCAGTCGGCCGACATCGATAAGGGAGATTTTCTTCCAACCCCTTGGAAGAGAGGAAGAGAAAGGAGTGCTTCCTATGAAGCTAGGCTGGCACTTAGGAAGATTGGACGAGTACAAGATCGAAAAGAACCCTATAGGCAGGCTAAAAGCGCTGTCCGTCTTCATGGCCTCAATAATACTCAGTATTGTACTGGCCGAATCCGTTTCGCAGCACGGAGTATACCTCAATCTCCGTTAGTTCCGTTTCGGCTTTTTCCCCAATTTCCCACTCCTTCTGTGAGGCAAAACCTCACCACACTACACTTCGACACAAGAGAAGAGGACCGGGCGCTTGTATCTTCGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

34.98

Weight (kDa)

10.14

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07798 AT5G06043 ATMG01220
prunus_persica Prupe.6G021900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 368
AccB1I GGYRCC 2 cut(s) 185, 452
AccI GTMKAC 1 cut(s) 808
AccII CGCG 2 cut(s) 169, 334
AciI CCGC 3 cut(s) 167, 332, 543
AcoI YGGCCR 2 cut(s) 597, 781
AfaI GTAC 3 cut(s) 329, 702, 778
AfeI AGCGCT 2 cut(s) 552, 739
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 1 cut(s) 409
AjnI CCWGG 1 cut(s) 129
AleI CACNNNNGTG 1 cut(s) 508
AluBI AGCT 4 cut(s) 97, 345, 518, 671
AluI AGCT 4 cut(s) 97, 345, 518, 671
Alw21I GWGCWC 3 cut(s) 125, 485, 505
Alw44I GTGCAC 1 cut(s) 501
Aor51HI AGCGCT 2 cut(s) 552, 739
AoxI GGCC 3 cut(s) 597, 754, 781
ApaLI GTGCAC 1 cut(s) 501
ApeKI GCWGC 3 cut(s) 441, 524, 797
AspLEI GCGC 4 cut(s) 369, 553, 740, 919
AspS9I GGNCC 2 cut(s) 214, 910
AsuC2I CCSGG 1 cut(s) 914
AsuHPI GGTGA 2 cut(s) 295, 871
AvaII GGWCC 2 cut(s) 214, 910
BaeGI GKGCMC 2 cut(s) 505, 584
BanI GGYRCC 2 cut(s) 185, 452
BauI CACGAG 2 cut(s) 204, 457
BbsI GAAGAC 1 cut(s) 740
Bbv12I GWGCWC 3 cut(s) 125, 485, 505
BbvI GCAGC 3 cut(s) 428, 511, 809
BccI CCATC 1 cut(s) 75
BcgI CGANNNNNNTGC 4 cut(s) 434, 468, 503, 537
BciT130I CCWGG 1 cut(s) 131
BcnI CCSGG 1 cut(s) 914
BfaI CTAG 2 cut(s) 276, 672
BfmI CTRYAG 2 cut(s) 178, 721
BfoI RGCGCY 3 cut(s) 554, 741, 920
BisI GCNGC 3 cut(s) 442, 525, 798
BlsI GCNGC 3 cut(s) 443, 526, 799
Bme1390I CCNGG 2 cut(s) 131, 914
Bme18I GGWCC 2 cut(s) 214, 910
BmgT120I GGNCC 2 cut(s) 214, 910
BmiI GGNNCC 4 cut(s) 74, 187, 215, 454
BmrFI CCNGG 2 cut(s) 131, 914
BpiI GAAGAC 1 cut(s) 740
BplI GAGNNNNNCTC 2 cut(s) 796, 828
BpuMI CCSGG 1 cut(s) 914
Bsa29I ATCGAT 1 cut(s) 606
BsaJI CCNNGG 4 cut(s) 76, 130, 228, 632
BsaWI WCCGGW 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 784
BseBI CCWGG 1 cut(s) 131
BseCI ATCGAT 1 cut(s) 606
BseDI CCNNGG 4 cut(s) 76, 130, 228, 632
BseGI GGATG 4 cut(s) 86, 224, 433, 541
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 3 cut(s) 24, 605, 782
BseNI ACTGG 1 cut(s) 784
BseRI GAGGAG 1 cut(s) 351
BseSI GKGCMC 2 cut(s) 505, 584
BseX3I CGGCCG 1 cut(s) 597
BseXI GCAGC 3 cut(s) 428, 511, 809
BseYI CCCAGC 2 cut(s) 373, 577
Bsh1236I CGCG 2 cut(s) 169, 334
Bsh1285I CGRYCG 1 cut(s) 600
BshFI GGCC 3 cut(s) 599, 756, 783
BshNI GGYRCC 2 cut(s) 185, 452
BshVI ATCGAT 1 cut(s) 606
BsiEI CGRYCG 1 cut(s) 600
BsiHKAI GWGCWC 3 cut(s) 125, 485, 505
BsiSI CCGG 2 cut(s) 70, 913
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 3 cut(s) 599, 756, 783
Bsp1286I GDGCHC 4 cut(s) 125, 485, 505, 584
Bsp143I GATC 1 cut(s) 706
Bsp19I CCATGG 1 cut(s) 76
BspACI CCGC 3 cut(s) 167, 332, 543
BspANI GGCC 3 cut(s) 599, 756, 783
BspCNI CTCAG 3 cut(s) 23, 604, 781
BspDI ATCGAT 1 cut(s) 606
BspFNI CGCG 2 cut(s) 169, 334
BspLI GGNNCC 4 cut(s) 74, 187, 215, 454
BspT107I GGYRCC 2 cut(s) 185, 452
BsrI ACTGG 1 cut(s) 784
BssECI CCNNGG 4 cut(s) 76, 130, 228, 632
BssMI GATC 1 cut(s) 706
BssNAI GTATAC 1 cut(s) 809
BssSI CACGAG 2 cut(s) 204, 457
BssT1I CCWWGG 2 cut(s) 76, 632
Bst1107I GTATAC 1 cut(s) 809
Bst2BI CACGAG 2 cut(s) 204, 457
Bst2UI CCWGG 1 cut(s) 131
Bst6I CTCTTC 4 cut(s) 564, 632, 640, 900
BstC8I GCNNGC 3 cut(s) 167, 678, 729
BstDSI CCRYGG 2 cut(s) 76, 228
BstF5I GGATG 4 cut(s) 86, 224, 433, 541
BstFNI CGCG 2 cut(s) 169, 334
BstH2I RGCGCY 3 cut(s) 554, 741, 920
BstHHI GCGC 4 cut(s) 369, 553, 740, 919
BstKTI GATC 1 cut(s) 709
BstMBI GATC 1 cut(s) 706
BstMCI CGRYCG 1 cut(s) 600
BstMWI GCNNNNNNNGC 4 cut(s) 103, 524, 677, 737
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 129, 912
BstSFI CTRYAG 2 cut(s) 178, 721
BstSLI GKGCMC 2 cut(s) 505, 584
BstUI CGCG 2 cut(s) 169, 334
BstV1I GCAGC 3 cut(s) 428, 511, 809
BstV2I GAAGAC 1 cut(s) 740
BstXI CCANNNNNNTGG 1 cut(s) 633
BstZ17I GTATAC 1 cut(s) 809
BstZI CGGCCG 1 cut(s) 597
Bsu15I ATCGAT 1 cut(s) 606
BsuRI GGCC 3 cut(s) 599, 756, 783
BsuTUI ATCGAT 1 cut(s) 606
BtgI CCRYGG 2 cut(s) 76, 228
BtsCI GGATG 4 cut(s) 86, 224, 433, 541
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 2 cut(s) 49, 582
Cac8I GCNNGC 3 cut(s) 167, 678, 729
CfoI GCGC 4 cut(s) 369, 553, 740, 919
Cfr13I GGNCC 2 cut(s) 214, 910
ClaI ATCGAT 1 cut(s) 606
Csp6I GTAC 3 cut(s) 328, 701, 777
CviAII CATG 2 cut(s) 77, 752
CviQI GTAC 3 cut(s) 328, 701, 777
DpnI GATC 1 cut(s) 708
DpnII GATC 1 cut(s) 706
EaeI YGGCCR 2 cut(s) 597, 781
EagI CGGCCG 1 cut(s) 597
Eam1104I CTCTTC 4 cut(s) 564, 632, 640, 900
EarI CTCTTC 4 cut(s) 564, 632, 640, 900
EclXI CGGCCG 1 cut(s) 597
Eco130I CCWWGG 2 cut(s) 76, 632
Eco47I GGWCC 2 cut(s) 214, 910
Eco47III AGCGCT 2 cut(s) 552, 739
Eco52I CGGCCG 1 cut(s) 597
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 2 cut(s) 76, 632
ErhI CCWWGG 2 cut(s) 76, 632
FaeI CATG 2 cut(s) 80, 755
FaiI YATR 9 cut(s) 78, 175, 180, 314, 380, 666, 723, 753, 809
FalI AAGNNNNNCTT 2 cut(s) 643, 675
FaqI GGGAC 1 cut(s) 227
FatI CATG 2 cut(s) 76, 751
FauI CCCGC 3 cut(s) 174, 339, 536
FblI GTMKAC 1 cut(s) 808
Fnu4HI GCNGC 3 cut(s) 442, 525, 798
FokI GGATG 4 cut(s) 93, 211, 440, 548
Fsp4HI GCNGC 3 cut(s) 442, 525, 798
FspBI CTAG 2 cut(s) 276, 672
FspI TGCGCA 1 cut(s) 368
GlaI GCGC 4 cut(s) 368, 552, 739, 918
GluI GCNGC 3 cut(s) 442, 525, 798
GsaI CCCAGC 2 cut(s) 377, 581
HaeII RGCGCY 3 cut(s) 554, 741, 920
HaeIII GGCC 3 cut(s) 599, 756, 783
HapII CCGG 2 cut(s) 70, 913
HhaI GCGC 4 cut(s) 369, 553, 740, 919
Hin1II CATG 2 cut(s) 80, 755
Hin6I GCGC 4 cut(s) 367, 551, 738, 917
HinP1I GCGC 4 cut(s) 367, 551, 738, 917
HinfI GANTC 5 cut(s) 5, 66, 148, 460, 786
HpaII CCGG 2 cut(s) 70, 913
HphI GGTGA 2 cut(s) 295, 871
Hpy166II GTNNAC 3 cut(s) 143, 503, 809
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 2 cut(s) 464, 930
Hpy8I GTNNAC 3 cut(s) 143, 503, 809
HpyAV CCTTC 4 cut(s) 129, 316, 359, 870
HpyCH4V TGCA 4 cut(s) 23, 503, 527, 571
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 524, 677, 737
Hsp92II CATG 2 cut(s) 80, 755
HspAI GCGC 4 cut(s) 367, 551, 738, 917
Kzo9I GATC 1 cut(s) 706
Lsp1109I GCAGC 3 cut(s) 428, 511, 809
MaeI CTAG 2 cut(s) 276, 672
MalI GATC 1 cut(s) 708
MboI GATC 1 cut(s) 706
MfeI CAATTG 1 cut(s) 191
MhlI GDGCHC 4 cut(s) 125, 485, 505, 584
MluCI AATT 5 cut(s) 108, 191, 404, 476, 848
MlyI GAGTC 3 cut(s) 75, 142, 469
MmeI TCCRAC 1 cut(s) 650
MseI TTAA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 508
MspI CCGG 2 cut(s) 70, 913
MspR9I CCNGG 2 cut(s) 131, 914
MunI CAATTG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 131
MvnI CGCG 2 cut(s) 169, 334
MwoI GCNNNNNNNGC 4 cut(s) 103, 524, 677, 737
NciI CCSGG 1 cut(s) 914
NcoI CCATGG 1 cut(s) 76
NdeII GATC 1 cut(s) 706
NlaIII CATG 2 cut(s) 80, 755
NlaIV GGNNCC 4 cut(s) 74, 187, 215, 454
NsbI TGCGCA 1 cut(s) 368
OliI CACNNNNGTG 1 cut(s) 508
PfeI GAWTC 2 cut(s) 5, 786
PkrI GCNGC 3 cut(s) 443, 526, 799
PleI GAGTC 3 cut(s) 74, 142, 468
PpsI GAGTC 3 cut(s) 74, 142, 468
Psp6I CCWGG 1 cut(s) 129
PspFI CCCAGC 2 cut(s) 373, 577
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 4 cut(s) 74, 187, 215, 454
PspPI GGNCC 2 cut(s) 214, 910
RsaI GTAC 3 cut(s) 329, 702, 778
RsaNI GTAC 3 cut(s) 328, 701, 777
RseI CAYNNNNRTG 1 cut(s) 508
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 3 cut(s) 442, 525, 798
Sau3AI GATC 1 cut(s) 706
Sau96I GGNCC 2 cut(s) 214, 910
SchI GAGTC 3 cut(s) 75, 142, 469
ScrFI CCNGG 2 cut(s) 131, 914
SduI GDGCHC 4 cut(s) 125, 485, 505, 584
SfcI CTRYAG 2 cut(s) 178, 721
SinI GGWCC 2 cut(s) 214, 910
SmiMI CAYNNNNRTG 1 cut(s) 508
Sse9I AATT 5 cut(s) 108, 191, 404, 476, 848
SsiI CCGC 3 cut(s) 167, 332, 543
SspMI CTAG 2 cut(s) 276, 672
StyD4I CCNGG 2 cut(s) 129, 912
StyI CCWWGG 2 cut(s) 76, 632
TaqI TCGA 4 cut(s) 463, 606, 709, 894
TasI AATT 5 cut(s) 108, 191, 404, 476, 848
TatI WGTACW 2 cut(s) 700, 776
TfiI GAWTC 2 cut(s) 5, 786
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 2 cut(s) 49, 589
TseI GCWGC 3 cut(s) 441, 524, 797
TspDTI ATGAA 4 cut(s) 213, 444, 681, 740
TspGWI ACGGA 6 cut(s) 245, 734, 779, 810, 817, 819
TspRI CASTG 2 cut(s) 49, 589
VneI GTGCAC 1 cut(s) 501
VpaK11BI GGWCC 2 cut(s) 214, 910
XmiI GTMKAC 1 cut(s) 808
XspI CTAG 2 cut(s) 276, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.