AT5G06043

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0021952
Physical Location & Seq
Reverse (-)
1817137 .. 1817505
369 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06043.1

Sequence Viewer

Length: 369 bp
ATGCGAGGCGCCGTCTTAGCCTTCCCTGACCAGGATCGCTCCCACACCTGTAGCGTTCGTGATTGGCCTCGTCGAGTCATGACTTCGCCCTCACGTGGGAGGAGATCATCCGCGCCCTCTAAGACAGATCATCCGCGCCGGAATCCCCTAACTTCTTTCCAATATTTTGACGATCCACCGGCACCAGAGATTGTGATAAGCAGCGGTTGGCCAGTTCCGTCTACTTTTCTTTCCAAACTTTTTCTAAAGTGCGAAATAAACCTATCAATTGGGGGATCAATTTTCCACATCAGTCTAAGTGGCGGAGAATTCAATTTCACCGGGTCCATGTCGGAGATATCTAGCCTCTTCCAGGAGTACTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.59

Weight (kDa)

8.77

Isoelectric Point (pI)

70.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07798 AT5G06043 ATMG01220
prunus_persica Prupe.6G021900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 8, 181
AccI GTMKAC 1 cut(s) 221
AccII CGCG 2 cut(s) 113, 136
AciI CCGC 4 cut(s) 111, 134, 204, 303
AclWI GGATC 3 cut(s) 42, 167, 283
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 1 cut(s) 308
AcvI CACGTG 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 4 cut(s) 31, 95, 96, 352
AgsI TTSAA 1 cut(s) 313
AjnI CCWGG 2 cut(s) 30, 351
AlwI GGATC 3 cut(s) 42, 167, 283
AoxI GGCC 2 cut(s) 65, 209
ApeKI GCWGC 1 cut(s) 201
ApoI RAATTY 1 cut(s) 308
AspLEI GCGC 3 cut(s) 11, 115, 138
AspS9I GGNCC 1 cut(s) 324
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 1 cut(s) 310
AvaII GGWCC 1 cut(s) 324
BalI TGGCCA 1 cut(s) 211
BanI GGYRCC 2 cut(s) 8, 181
BbrPI CACGTG 1 cut(s) 95
BbvI GCAGC 1 cut(s) 213
BciT130I CCWGG 2 cut(s) 32, 353
BcnI CCSGG 1 cut(s) 322
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 49
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 3 cut(s) 32, 322, 353
Bme18I GGWCC 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 324
BmiI GGNNCC 3 cut(s) 10, 183, 325
BmrFI CCNGG 3 cut(s) 32, 322, 353
BpuEI CTTGAG 1 cut(s) 346
BpuMI CCSGG 1 cut(s) 322
BsaAI YACGTR 1 cut(s) 95
BsaHI GRCGYC 1 cut(s) 9
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 95, 96, 352
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 212
BseBI CCWGG 2 cut(s) 32, 353
BseGI GGATG 2 cut(s) 107, 130
BseLI CCNNNNNNNGG 4 cut(s) 31, 95, 96, 352
BseNI ACTGG 1 cut(s) 212
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 213
Bsh1236I CGCG 2 cut(s) 113, 136
BshFI GGCC 2 cut(s) 67, 211
BshNI GGYRCC 2 cut(s) 8, 181
BsiSI CCGG 3 cut(s) 139, 179, 321
BslI CCNNNNNNNGG 4 cut(s) 31, 95, 96, 352
BsnI GGCC 2 cut(s) 67, 211
Bsp143I GATC 5 cut(s) 34, 104, 127, 172, 275
BspACI CCGC 4 cut(s) 111, 134, 204, 303
BspANI GGCC 2 cut(s) 67, 211
BspFNI CGCG 2 cut(s) 113, 136
BspHI TCATGA 1 cut(s) 78
BspLI GGNNCC 3 cut(s) 10, 183, 325
BspPI GGATC 3 cut(s) 42, 167, 283
BspT107I GGYRCC 2 cut(s) 8, 181
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 178
BssMI GATC 5 cut(s) 34, 104, 127, 172, 275
BssNI GRCGYC 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 32, 353
Bst6I CTCTTC 1 cut(s) 353
BstACI GRCGYC 1 cut(s) 9
BstBAI YACGTR 1 cut(s) 95
BstDEI CTNAG 3 cut(s) 16, 120, 296
BstENI CCTNNNNNAGG 1 cut(s) 350
BstF5I GGATG 2 cut(s) 107, 130
BstFNI CGCG 2 cut(s) 113, 136
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 3 cut(s) 11, 115, 138
BstKTI GATC 5 cut(s) 37, 107, 130, 175, 278
BstMBI GATC 5 cut(s) 34, 104, 127, 172, 275
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 2 cut(s) 32, 353
BstSCI CCNGG 3 cut(s) 30, 320, 351
BstSFI CTRYAG 1 cut(s) 49
BstUI CGCG 2 cut(s) 113, 136
BstV1I GCAGC 1 cut(s) 213
BsuRI GGCC 2 cut(s) 67, 211
BtsCI GGATG 2 cut(s) 107, 130
CciI TCATGA 1 cut(s) 78
CfoI GCGC 3 cut(s) 11, 115, 138
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 324
Csp6I GTAC 1 cut(s) 358
CviAII CATG 2 cut(s) 79, 328
CviJI RGCY 4 cut(s) 20, 67, 211, 345
CviKI_1 RGCY 4 cut(s) 20, 67, 211, 345
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 3 cut(s) 16, 120, 296
DinI GGCGCC 1 cut(s) 10
DpnI GATC 5 cut(s) 36, 106, 129, 174, 277
DpnII GATC 5 cut(s) 34, 104, 127, 172, 275
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EciI GGCGGA 1 cut(s) 318
Eco32I GATATC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 324
Eco72I CACGTG 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 2 cut(s) 30, 351
EcoRV GATATC 1 cut(s) 339
EgeI GGCGCC 1 cut(s) 10
EheI GGCGCC 1 cut(s) 10
FaeI CATG 2 cut(s) 82, 331
FaiI YATR 2 cut(s) 80, 329
FatI CATG 2 cut(s) 78, 327
FblI GTMKAC 1 cut(s) 221
Fnu4HI GCNGC 1 cut(s) 202
FokI GGATG 2 cut(s) 94, 117
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 1 cut(s) 342
GlaI GCGC 3 cut(s) 10, 114, 137
GluI GCNGC 1 cut(s) 202
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 2 cut(s) 67, 211
HapII CCGG 3 cut(s) 139, 179, 321
HhaI GCGC 3 cut(s) 11, 115, 138
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 2 cut(s) 82, 331
Hin6I GCGC 3 cut(s) 9, 113, 136
HinP1I GCGC 3 cut(s) 9, 113, 136
HinfI GANTC 2 cut(s) 75, 142
HpaII CCGG 3 cut(s) 139, 179, 321
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 2 cut(s) 59, 79
Hpy8I GTNNAC 1 cut(s) 222
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 3 cut(s) 16, 120, 296
HpySE526I ACGT 1 cut(s) 94
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 82, 331
HspAI GCGC 3 cut(s) 9, 113, 136
KasI GGCGCC 1 cut(s) 8
Kzo9I GATC 5 cut(s) 34, 104, 127, 172, 275
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 1 cut(s) 213
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 94
MalI GATC 5 cut(s) 36, 106, 129, 174, 277
MboI GATC 5 cut(s) 34, 104, 127, 172, 275
MboII GAAGA 1 cut(s) 340
MfeI CAATTG 1 cut(s) 267
MlsI TGGCCA 1 cut(s) 211
MluCI AATT 4 cut(s) 267, 279, 308, 313
MluNI TGGCCA 1 cut(s) 211
Mly113I GGCGCC 1 cut(s) 9
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 5 cut(s) 78, 93, 100, 127, 356
Mox20I TGGCCA 1 cut(s) 211
MscI TGGCCA 1 cut(s) 211
Msp20I TGGCCA 1 cut(s) 211
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 3 cut(s) 139, 179, 321
MspR9I CCNGG 3 cut(s) 32, 322, 353
MunI CAATTG 1 cut(s) 267
MvaI CCWGG 2 cut(s) 32, 353
MvnI CGCG 2 cut(s) 113, 136
MwoI GCNNNNNNNGC 1 cut(s) 17
NarI GGCGCC 1 cut(s) 9
NciI CCSGG 1 cut(s) 322
NdeII GATC 5 cut(s) 34, 104, 127, 172, 275
NlaIII CATG 2 cut(s) 82, 331
NlaIV GGNNCC 3 cut(s) 10, 183, 325
PagI TCATGA 1 cut(s) 78
PfeI GAWTC 1 cut(s) 142
PfoI TCCNGGA 1 cut(s) 351
PkrI GCNGC 1 cut(s) 203
PleI GAGTC 1 cut(s) 83
PluTI GGCGCC 1 cut(s) 12
PmaCI CACGTG 1 cut(s) 95
PmlI CACGTG 1 cut(s) 95
PpsI GAGTC 1 cut(s) 83
Ppu21I YACGTR 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 30, 351
PspCI CACGTG 1 cut(s) 95
PspGI CCWGG 2 cut(s) 30, 351
PspN4I GGNNCC 3 cut(s) 10, 183, 325
PspPI GGNCC 1 cut(s) 324
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 5 cut(s) 34, 104, 127, 172, 275
Sau96I GGNCC 1 cut(s) 324
ScaI AGTACT 1 cut(s) 359
SchI GAGTC 1 cut(s) 84
ScrFI CCNGG 3 cut(s) 32, 322, 353
SetI ASST 3 cut(s) 50, 97, 264
SfcI CTRYAG 1 cut(s) 49
SfoI GGCGCC 1 cut(s) 10
SinI GGWCC 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 4 cut(s) 267, 279, 308, 313
SsiI CCGC 4 cut(s) 111, 134, 204, 303
SspDI GGCGCC 1 cut(s) 8
SspI AATATT 1 cut(s) 164
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 30, 320, 351
TaiI ACGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 73
TasI AATT 4 cut(s) 267, 279, 308, 313
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 1 cut(s) 142
TseI GCWGC 1 cut(s) 201
TspGWI ACGGA 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 324
XagI CCTNNNNNAGG 1 cut(s) 350
XapI RAATTY 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 221
XspI CTAG 1 cut(s) 342
ZrmI AGTACT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.