ATMG01220

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
Physical Location & Seq
Reverse (-)
305221 .. 305562
342 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG01220.1

Sequence Viewer

Length: 342 bp
ATGAAAAGGTATGCCACAATGCTATCCGAGTTCACAGGTGTCGTTCCGTCTACTTTTCTTTCCAAACTTTTTCTAAAGTGCGAAATAAACCTATCAATTGGTAGAGTACAAGATCGAAAAGAACCCTATAGGCAGGCTAAAAGCGCTGTCCGTCTTCATGGCCTCAATAATACTCAGTATTGTACTGGCCGAATCCGTTTCGCAGCACGGAGTATACCTCAATCTCCGTTAGTTCCGTTTCGGCTTTTTCCCCAATTTCCCACTCCTTCTGTGAGGCAAAACCTCACCACACTACACTTCGACACAAGAGAAGAGGACCGGGCGCTTGTATCTTCGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.93

Weight (kDa)

10.41

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07798 AT5G06043 ATMG01220
prunus_persica Prupe.6G021900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 50, 214
AcoI YGGCCR 1 cut(s) 187
AfaI GTAC 2 cut(s) 108, 184
AfeI AGCGCT 1 cut(s) 145
Aor51HI AGCGCT 1 cut(s) 145
AoxI GGCC 2 cut(s) 160, 187
ApeKI GCWGC 1 cut(s) 203
AspLEI GCGC 2 cut(s) 146, 325
AspS9I GGNCC 1 cut(s) 316
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 277
AvaII GGWCC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 215
BcnI CCSGG 1 cut(s) 320
BfmI CTRYAG 1 cut(s) 127
BfoI RGCGCY 2 cut(s) 147, 326
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 1 cut(s) 320
Bme18I GGWCC 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 146
BplI GAGNNNNNCTC 2 cut(s) 202, 234
BpuMI CCSGG 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 215
BshFI GGCC 2 cut(s) 162, 189
BsiSI CCGG 1 cut(s) 319
BsnI GGCC 2 cut(s) 162, 189
Bsp143I GATC 1 cut(s) 112
BspANI GGCC 2 cut(s) 162, 189
BspCNI CTCAG 1 cut(s) 187
BsrI ACTGG 1 cut(s) 190
BssMI GATC 1 cut(s) 112
BssNAI GTATAC 1 cut(s) 215
Bst1107I GTATAC 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 174
BstH2I RGCGCY 2 cut(s) 147, 326
BstHHI GCGC 2 cut(s) 146, 325
BstKTI GATC 1 cut(s) 115
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 318
BstSFI CTRYAG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 215
BstV2I GAAGAC 1 cut(s) 146
BstZ17I GTATAC 1 cut(s) 215
BsuRI GGCC 2 cut(s) 162, 189
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 2 cut(s) 146, 325
Cfr13I GGNCC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 107, 183
CviAII CATG 1 cut(s) 158
CviJI RGCY 4 cut(s) 137, 162, 189, 244
CviKI_1 RGCY 4 cut(s) 137, 162, 189, 244
CviQI GTAC 2 cut(s) 107, 183
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 316
Eco47III AGCGCT 1 cut(s) 145
FaeI CATG 1 cut(s) 161
FaiI YATR 4 cut(s) 12, 129, 159, 215
FatI CATG 1 cut(s) 157
FblI GTMKAC 2 cut(s) 50, 214
Fnu4HI GCNGC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 204
GlaI GCGC 2 cut(s) 145, 324
GluI GCNGC 1 cut(s) 204
HaeII RGCGCY 2 cut(s) 147, 326
HaeIII GGCC 2 cut(s) 162, 189
HapII CCGG 1 cut(s) 319
HhaI GCGC 2 cut(s) 146, 325
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 2 cut(s) 144, 323
HinP1I GCGC 2 cut(s) 144, 323
HinfI GANTC 1 cut(s) 192
HpaII CCGG 1 cut(s) 319
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 3 cut(s) 33, 51, 215
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 336
Hpy8I GTNNAC 3 cut(s) 33, 51, 215
HpyAV CCTTC 1 cut(s) 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 2 cut(s) 144, 323
Kzo9I GATC 1 cut(s) 112
LpnPI CCDG 4 cut(s) 21, 119, 171, 332
Lsp1109I GCAGC 1 cut(s) 215
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 3 cut(s) 146, 323, 324
MfeI CAATTG 1 cut(s) 96
MluCI AATT 2 cut(s) 96, 254
MnlI CCTC 5 cut(s) 173, 228, 267, 293, 307
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 1 cut(s) 320
MunI CAATTG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 143
NciI CCSGG 1 cut(s) 320
NdeII GATC 1 cut(s) 112
NlaIII CATG 1 cut(s) 161
PfeI GAWTC 1 cut(s) 192
PkrI GCNGC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 316
RsaI GTAC 2 cut(s) 108, 184
RsaNI GTAC 2 cut(s) 107, 183
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 316
ScrFI CCNGG 1 cut(s) 320
SetI ASST 5 cut(s) 11, 40, 93, 220, 285
SfcI CTRYAG 1 cut(s) 127
SinI GGWCC 1 cut(s) 316
Sse9I AATT 2 cut(s) 96, 254
StyD4I CCNGG 1 cut(s) 318
TaqI TCGA 2 cut(s) 115, 300
TasI AATT 2 cut(s) 96, 254
TatI WGTACW 2 cut(s) 106, 182
TfiI GAWTC 1 cut(s) 192
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 17, 146
TspGWI ACGGA 6 cut(s) 36, 140, 185, 216, 223, 225
VpaK11BI GGWCC 1 cut(s) 316
XmiI GTMKAC 2 cut(s) 50, 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.