AT2G12900
BZIP Family

BEST Arabidopsis thaliana protein match is Basic-leucine zipper (bZIP) transcription factor family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0023825
Physical Location & Seq
Forward (+)
5293897 .. 5295480
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G12900.1

Sequence Viewer

Length: 795 bp
ATGAATGGATCCGACAATATCACTACTCCTTCCGGATCACGGTCTATGACTCAGCCTTCACTTGCCTCCTCCTCCTTGCCCCCATTGAGCCCTTCTTCGTCAACATTCCGTCGCAATTCATTACCATCGATGAGCTTTTCTCCGTCAGCTCCTGTGGAGAGTAGAGACTCTTCCATTAAGGTTAATAAAAATCCTTCATTGCCCCCTTTGGTTGATGGAGAAGAGGATGCTTCCTGGCTCGAGTTTGGTAGCAGTGATTATACTGATGATGAATTGAATAAGATTGCAAAGAGTACCAAACTTCAAGATATTGCAAAGAGTACCAAACTTCAAGAGATTGTATCTGATCCTAAGAAAGTCAGAAGAATCTTGAAAAATCGAGAGTTAGCCGCATCTTCAAAGCAGAGGAAGTTAAAGTACATGATTGACTTGGAACATAGAATAAAATTTCTTGAGAACAAAAATGCTTTAATATTTGAAAAGATCAAACTTTTGGAGAAGGATAAAACAATATTGATGAATGAGAAGAAGGAAATCACGATTCAAATTGAATCATTGGAGCAACAGGCCCAACTTCGTGATGCTTTGACTGAAAAATTGCACGTAGAAATTGAAAGGCTAAAAGTAATAACTATTTCGAACGAAAAAGGGAGTGTAGAATTACAAAGGCTCAAAATGGAAACATGTGAAGTATTACAGTACCGTCGCGAGTTTGACAGATCAAACATGCAAGGAATGGACCCAAACATGTTCACTTGGTCTCAGCCAAACCTTGGTTTTTATGGACAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

264

Amino Acids

30.07

Weight (kDa)

8.78

Isoelectric Point (pI)

63.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 115 - 168 7.6e-15 Basic region leucine zipper
bZIP_1 PF00170 118 - 170 3.4e-07 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023825)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G12900 AT2G12940 AT2G13150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 773
AccII CGCG 1 cut(s) 708
AccIII TCCGGA 1 cut(s) 32
AciI CCGC 1 cut(s) 390
AclWI GGATC 4 cut(s) 3, 16, 43, 341
AcsI RAATTY 1 cut(s) 446
AfaI GTAC 4 cut(s) 295, 322, 419, 701
AfiI CCNNNNNNNGG 2 cut(s) 39, 773
AflIII ACRYGT 2 cut(s) 683, 747
AgsI TTSAA 9 cut(s) 277, 305, 332, 373, 399, 479, 545, 551, 614
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 2 cut(s) 135, 149
AluI AGCT 2 cut(s) 135, 149
Alw26I GTCTC 2 cut(s) 159, 765
AlwI GGATC 4 cut(s) 3, 16, 43, 341
AlwNI CAGNNNCTG 1 cut(s) 152
Ama87I CYCGRG 1 cut(s) 239
Aor13HI TCCGGA 1 cut(s) 32
AoxI GGCC 1 cut(s) 567
ApoI RAATTY 1 cut(s) 446
AspS9I GGNCC 2 cut(s) 568, 739
AsuII TTCGAA 1 cut(s) 638
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 739
BamHI GGATCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 92
BarI GAAGNNNNNNTAC 4 cut(s) 154, 186, 401, 433
BccI CCATC 2 cut(s) 133, 209
BciT130I CCWGG 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 159, 765
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
Bme1390I CCNGG 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 739
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 568, 739
BmiI GGNNCC 2 cut(s) 10, 741
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 3 cut(s) 217, 401, 571
BplI GAGNNNNNCTC 2 cut(s) 124, 156
Bpu14I TTCGAA 1 cut(s) 638
BpuEI CTTGAG 1 cut(s) 473
Bsa29I ATCGAT 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 604
BsaI GGTCTC 1 cut(s) 765
BsaJI CCNNGG 1 cut(s) 772
BsaWI WCCGGW 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 773
Bse3DI GCAATG 1 cut(s) 197
BseAI TCCGGA 1 cut(s) 32
BseBI CCWGG 1 cut(s) 235
BseCI ATCGAT 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 772
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 2 cut(s) 39, 773
BseMI GCAATG 1 cut(s) 197
BseMII CTCAG 2 cut(s) 65, 776
BseRI GAGGAG 2 cut(s) 58, 61
Bsh1236I CGCG 1 cut(s) 708
BshFI GGCC 1 cut(s) 569
BshVI ATCGAT 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 1 cut(s) 33
BslI CCNNNNNNNGG 2 cut(s) 39, 773
BsmAI GTCTC 2 cut(s) 159, 765
BsnI GGCC 1 cut(s) 569
Bso31I GGTCTC 1 cut(s) 765
BsoBI CYCGRG 1 cut(s) 239
Bsp119I TTCGAA 1 cut(s) 638
Bsp1286I GDGCHC 1 cut(s) 92
Bsp13I TCCGGA 1 cut(s) 32
Bsp143I GATC 5 cut(s) 8, 35, 346, 483, 719
Bsp68I TCGCGA 1 cut(s) 708
BspACI CCGC 1 cut(s) 390
BspANI GGCC 1 cut(s) 569
BspCNI CTCAG 2 cut(s) 64, 775
BspDI ATCGAT 1 cut(s) 128
BspEI TCCGGA 1 cut(s) 32
BspFNI CGCG 1 cut(s) 708
BspLI GGNNCC 2 cut(s) 10, 741
BspPI GGATC 4 cut(s) 3, 16, 43, 341
BspT104I TTCGAA 1 cut(s) 638
BspTNI GGTCTC 1 cut(s) 765
BsrDI GCAATG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 772
BssMI GATC 5 cut(s) 8, 35, 346, 483, 719
BssT1I CCWWGG 1 cut(s) 772
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 3 cut(s) 42, 699, 704
Bst6I CTCTTC 2 cut(s) 175, 216
BstBAI YACGTR 1 cut(s) 604
BstBI TTCGAA 1 cut(s) 638
BstDEI CTNAG 3 cut(s) 51, 351, 762
BstF5I GGATG 1 cut(s) 232
BstFNI CGCG 1 cut(s) 708
BstKTI GATC 5 cut(s) 11, 38, 349, 486, 722
BstMAI GTCTC 2 cut(s) 159, 765
BstMBI GATC 5 cut(s) 8, 35, 346, 483, 719
BstNI CCWGG 1 cut(s) 235
BstNSI RCATGY 3 cut(s) 687, 730, 751
BstSCI CCNGG 1 cut(s) 233
BstUI CGCG 1 cut(s) 708
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
Bsu15I ATCGAT 1 cut(s) 128
BsuRI GGCC 1 cut(s) 569
BsuTUI ATCGAT 1 cut(s) 128
BtsCI GGATG 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 259
BtuMI TCGCGA 1 cut(s) 708
CaiI CAGNNNCTG 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 568, 739
ClaI ATCGAT 1 cut(s) 128
Csp6I GTAC 4 cut(s) 294, 321, 418, 700
CviAII CATG 4 cut(s) 421, 684, 727, 748
CviQI GTAC 4 cut(s) 294, 321, 418, 700
DdeI CTNAG 3 cut(s) 51, 351, 762
DpnI GATC 5 cut(s) 10, 37, 348, 485, 721
DpnII GATC 5 cut(s) 8, 35, 346, 483, 719
Eam1104I CTCTTC 2 cut(s) 175, 216
EarI CTCTTC 2 cut(s) 175, 216
Eco130I CCWWGG 1 cut(s) 772
Eco24I GRGCYC 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 765
Eco47I GGWCC 1 cut(s) 739
Eco88I CYCGRG 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 772
EcoT38I GRGCYC 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 772
FaeI CATG 4 cut(s) 424, 687, 730, 751
FaiI YATR 8 cut(s) 47, 261, 422, 438, 685, 728, 749, 783
FatI CATG 4 cut(s) 420, 683, 726, 747
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 390
GluI GCNGC 1 cut(s) 390
HaeIII GGCC 1 cut(s) 569
HapII CCGG 1 cut(s) 33
Hin1II CATG 4 cut(s) 424, 687, 730, 751
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 5 cut(s) 49, 167, 366, 541, 551
HpaII CCGG 1 cut(s) 33
Hpy166II GTNNAC 2 cut(s) 102, 753
Hpy188I TCNGA 3 cut(s) 13, 346, 362
Hpy188III TCNNGA 9 cut(s) 33, 305, 332, 370, 380, 452, 538, 578, 707
Hpy8I GTNNAC 2 cut(s) 102, 753
Hpy99I CGWCG 2 cut(s) 114, 708
HpyAV CCTTC 6 cut(s) 39, 66, 102, 204, 493, 523
HpyCH4III ACNGT 3 cut(s) 42, 699, 704
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 4 cut(s) 287, 314, 601, 730
HpyF3I CTNAG 3 cut(s) 51, 351, 762
HpySE526I ACGT 1 cut(s) 603
Hsp92II CATG 4 cut(s) 424, 687, 730, 751
Kpn2I TCCGGA 1 cut(s) 32
Kzo9I GATC 5 cut(s) 8, 35, 346, 483, 719
LmnI GCTCC 2 cut(s) 154, 559
LpnPI CCDG 5 cut(s) 46, 165, 220, 247, 551
LweI GCATC 3 cut(s) 217, 401, 571
MaeII ACGT 1 cut(s) 603
MalI GATC 5 cut(s) 10, 37, 348, 485, 721
MboI GATC 5 cut(s) 8, 35, 346, 483, 719
MboII GAAGA 6 cut(s) 87, 162, 233, 375, 387, 538
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 7 cut(s) 115, 272, 446, 546, 596, 609, 659
MlyI GAGTC 2 cut(s) 43, 161
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 5 cut(s) 76, 79, 82, 217, 399
MroI TCCGGA 1 cut(s) 32
MseI TTAA 5 cut(s) 177, 183, 413, 470, 793
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
MvnI CGCG 1 cut(s) 708
NdeII GATC 5 cut(s) 8, 35, 346, 483, 719
NlaIII CATG 4 cut(s) 424, 687, 730, 751
NlaIV GGNNCC 2 cut(s) 10, 741
NruI TCGCGA 1 cut(s) 708
NspI RCATGY 3 cut(s) 687, 730, 751
NspV TTCGAA 1 cut(s) 638
PaeR7I CTCGAG 1 cut(s) 239
PciI ACATGT 2 cut(s) 683, 747
PfeI GAWTC 3 cut(s) 366, 541, 551
PflMI CCANNNNNTGG 1 cut(s) 773
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 2 cut(s) 43, 161
PpsI GAGTC 2 cut(s) 43, 161
Ppu21I YACGTR 1 cut(s) 604
PscI ACATGT 2 cut(s) 683, 747
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 2 cut(s) 10, 741
PspPI GGNCC 2 cut(s) 568, 739
PspXI VCTCGAGB 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 152
PsuI RGATCY 1 cut(s) 8
RruI TCGCGA 1 cut(s) 708
RsaI GTAC 4 cut(s) 295, 322, 419, 701
RsaNI GTAC 4 cut(s) 294, 321, 418, 700
SaqAI TTAA 5 cut(s) 177, 183, 413, 470, 793
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 5 cut(s) 8, 35, 346, 483, 719
Sau96I GGNCC 2 cut(s) 568, 739
SchI GAGTC 2 cut(s) 43, 161
ScrFI CCNGG 1 cut(s) 235
SduI GDGCHC 1 cut(s) 92
SetI ASST 5 cut(s) 137, 151, 183, 606, 774
SfaNI GCATC 3 cut(s) 217, 401, 571
Sfr274I CTCGAG 1 cut(s) 239
SfuI TTCGAA 1 cut(s) 638
SinI GGWCC 1 cut(s) 739
SlaI CTCGAG 1 cut(s) 239
SmlI CTYRAG 2 cut(s) 239, 452
SmoI CTYRAG 2 cut(s) 239, 452
Sse9I AATT 7 cut(s) 115, 272, 446, 546, 596, 609, 659
SsiI CCGC 1 cut(s) 390
SspI AATATT 2 cut(s) 474, 513
StyD4I CCNGG 1 cut(s) 233
StyI CCWWGG 1 cut(s) 772
TaaI ACNGT 3 cut(s) 42, 699, 704
TaiI ACGT 1 cut(s) 606
TaqI TCGA 4 cut(s) 128, 240, 379, 638
TasI AATT 7 cut(s) 115, 272, 446, 546, 596, 609, 659
TatI WGTACW 1 cut(s) 417
TauI GCSGC 1 cut(s) 392
TfiI GAWTC 3 cut(s) 366, 541, 551
Tru1I TTAA 5 cut(s) 177, 183, 413, 470, 793
Tru9I TTAA 5 cut(s) 177, 183, 413, 470, 793
TscAI CASTG 1 cut(s) 259
TspDTI ATGAA 5 cut(s) 17, 108, 186, 285, 533
TspGWI ACGGA 2 cut(s) 98, 132
TspRI CASTG 1 cut(s) 259
Van91I CCANNNNNTGG 1 cut(s) 773
VpaK11BI GGWCC 1 cut(s) 739
XapI RAATTY 1 cut(s) 446
XceI RCATGY 3 cut(s) 687, 730, 751
XhoI CTCGAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.