AT2G12940
BZIP Family

BEST Arabidopsis thaliana protein match is Basic-leucine zipper (bZIP) transcription factor family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0023825
Physical Location & Seq
Forward (+)
5317475 .. 5319090
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G12940.1

Sequence Viewer

Length: 885 bp
ATGAATGGATCCGACAATACCACTCCGTCCCGACCATGGTCGATAACTCAGCCTTCACTTGCCTTCTCCTCCTTGCCCCCATTGAGCCCTTCTCCGTCGTCATCCCGTCGCAATTCATTACCATTGATGAATCCGTCAACTTCTATGGAGAGTAGAGACTCTTCCATGAGGTTTAAGAAAAACTCTTTATTGCCTCCTTTGGGTGTGAAGAAAATAGCACCCAAAGATATTGGACCCCTAAAGAGACACTACAGGAGTGTTTCAATGGATAGTTGTTTGAGTGACTTACTGAAGCTAACTCCTTCTCCGGGTAACACTCCATCTTCAAGATTGGTTGATGGAGACCAGAATGCTTCCAGGCTAGAGTTTGATGCCAATGATTATACTGATGATGAATTGAATAAGATAGCAAAGAGTAACAAACTTAAAGAGGTTGCATTGGATCCTAAGGAAGTCAGAAGAATCTTGAAGAATCGAGAGTCCGCAGCACATTTAAAGCAGAAGAAGTTACAGTATATGATTAACTTGGAACACAGAATAAACTTTGTTGAGAACGAAAATGCTTCAATATTTGAAAAGATCAAGCTTTTGGAGAATGATAAAACAATGATGATGAATGAGAAGAAGGAAATCATGATTCGAATTGAATCGATGGAGATACAGGCACAACTTCGGGATGTCTTGACTGAACATTTGCACGGAGAAAGTGAAAGGCTAAAAGCTGCATTAATTTCGAACGAAAATGGGAATGGAAAAGTCCAAAAGCTAAGGATGGCAACTTGTGAAGTATTGCAGAACCGTCATGAATTCGACAAATCAAACATGGAAGTAATGGACTCAAACATGATCAATTGGTCGCAACCAAACCCTGGTTTTAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

294

Amino Acids

33.32

Weight (kDa)

9.07

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 148 - 199 3.9e-14 Basic region leucine zipper
bZIP_1 PF00170 150 - 204 1.2e-07 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023825)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G12900 AT2G12940 AT2G13150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 869
AciI CCGC 1 cut(s) 483
AclWI GGATC 4 cut(s) 3, 16, 437, 450
AcsI RAATTY 1 cut(s) 806
AcuI CTGAAG 1 cut(s) 311
AfiI CCNNNNNNNGG 4 cut(s) 36, 200, 308, 869
AgsI TTSAA 7 cut(s) 264, 327, 400, 469, 567, 575, 647
AjnI CCWGG 2 cut(s) 356, 868
AluBI AGCT 4 cut(s) 295, 586, 722, 766
AluI AGCT 4 cut(s) 295, 586, 722, 766
Alw26I GTCTC 3 cut(s) 150, 238, 336
AlwI GGATC 4 cut(s) 3, 16, 437, 450
ApeKI GCWGC 2 cut(s) 485, 722
ApoI RAATTY 1 cut(s) 806
ArsI GACNNNNNNTTYG 2 cut(s) 676, 708
AseI ATTAAT 1 cut(s) 728
AspS9I GGNCC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 309
AsuII TTCGAA 2 cut(s) 640, 734
AvaII GGWCC 1 cut(s) 233
AxyI CCTNAGG 1 cut(s) 447
BamHI GGATCC 2 cut(s) 8, 442
BanII GRGCYC 1 cut(s) 89
BarI GAAGNNNNNNTAC 2 cut(s) 145, 177
BbvI GCAGC 2 cut(s) 497, 709
BccI CCATC 4 cut(s) 328, 332, 646, 766
BcgI CGANNNNNNTGC 2 cut(s) 714, 748
BciT130I CCWGG 2 cut(s) 358, 870
BclI TGATCA 1 cut(s) 846
BcnI CCSGG 1 cut(s) 309
BcoDI GTCTC 3 cut(s) 150, 238, 336
BfaI CTAG 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 2 cut(s) 486, 723
BlsI GCNGC 2 cut(s) 487, 724
Bme1390I CCNGG 3 cut(s) 309, 358, 870
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 3 cut(s) 10, 235, 444
BmrFI CCNGG 3 cut(s) 309, 358, 870
BmsI GCATC 1 cut(s) 361
BoxI GACNNNNGTC 1 cut(s) 37
BplI GAGNNNNNCTC 2 cut(s) 76, 108
Bpu10I CCTNAGC 1 cut(s) 767
Bpu14I TTCGAA 2 cut(s) 640, 734
BpuMI CCSGG 1 cut(s) 309
Bsa29I ATCGAT 1 cut(s) 650
BsaI GGTCTC 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 35, 868
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 200, 308, 869
Bse21I CCTNAGG 1 cut(s) 447
BseBI CCWGG 2 cut(s) 358, 870
BseCI ATCGAT 1 cut(s) 650
BseDI CCNNGG 2 cut(s) 35, 868
BseGI GGATG 3 cut(s) 101, 682, 777
BseLI CCNNNNNNNGG 4 cut(s) 36, 200, 308, 869
BseMII CTCAG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 497, 709
BshVI ATCGAT 1 cut(s) 650
BsiSI CCGG 1 cut(s) 308
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 4 cut(s) 36, 200, 308, 869
BsmAI GTCTC 3 cut(s) 150, 238, 336
BsmFI GGGAC 1 cut(s) 13
BsmI GAATGC 1 cut(s) 355
Bso31I GGTCTC 1 cut(s) 336
Bsp119I TTCGAA 2 cut(s) 640, 734
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 4 cut(s) 8, 442, 579, 846
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 1 cut(s) 483
BspCNI CTCAG 1 cut(s) 61
BspDI ATCGAT 1 cut(s) 650
BspHI TCATGA 2 cut(s) 633, 802
BspLI GGNNCC 3 cut(s) 10, 235, 444
BspPI GGATC 4 cut(s) 3, 16, 437, 450
BspT104I TTCGAA 2 cut(s) 640, 734
BspTNI GGTCTC 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 35, 868
BssMI GATC 4 cut(s) 8, 442, 579, 846
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 358, 870
Bst4CI ACNGT 2 cut(s) 513, 800
Bst6I CTCTTC 1 cut(s) 166
BstBI TTCGAA 2 cut(s) 640, 734
BstDEI CTNAG 3 cut(s) 48, 447, 767
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 3 cut(s) 101, 682, 777
BstKTI GATC 4 cut(s) 11, 445, 582, 849
BstMAI GTCTC 3 cut(s) 150, 238, 336
BstMBI GATC 4 cut(s) 8, 442, 579, 846
BstNI CCWGG 2 cut(s) 358, 870
BstPAI GACNNNNGTC 1 cut(s) 37
BstSCI CCNGG 3 cut(s) 307, 356, 868
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 497, 709
BstX2I RGATCY 2 cut(s) 8, 442
BstYI RGATCY 2 cut(s) 8, 442
Bsu15I ATCGAT 1 cut(s) 650
Bsu36I CCTNAGG 1 cut(s) 447
BsuTUI ATCGAT 1 cut(s) 650
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 3 cut(s) 101, 682, 777
CciI TCATGA 2 cut(s) 633, 802
Cfr13I GGNCC 1 cut(s) 233
ClaI ATCGAT 1 cut(s) 650
CviAII CATG 6 cut(s) 36, 166, 634, 803, 823, 844
CviJI RGCY 8 cut(s) 52, 87, 295, 361, 586, 715, 722, 766
CviKI_1 RGCY 8 cut(s) 52, 87, 295, 361, 586, 715, 722, 766
DdeI CTNAG 3 cut(s) 48, 447, 767
DpnI GATC 4 cut(s) 10, 444, 581, 848
DpnII GATC 4 cut(s) 8, 442, 579, 846
DraI TTTAAA 1 cut(s) 495
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 89
Eco31I GGTCTC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 311
Eco81I CCTNAGG 1 cut(s) 447
EcoRI GAATTC 1 cut(s) 806
EcoRII CCWGG 2 cut(s) 356, 868
EcoT14I CCWWGG 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 6 cut(s) 39, 169, 637, 806, 826, 847
FaqI GGGAC 1 cut(s) 13
FatI CATG 6 cut(s) 35, 165, 633, 802, 822, 843
FbaI TGATCA 1 cut(s) 846
Fnu4HI GCNGC 2 cut(s) 486, 723
FokI GGATG 3 cut(s) 88, 689, 784
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 486, 723
FspBI CTAG 1 cut(s) 362
GluI GCNGC 2 cut(s) 486, 723
HapII CCGG 1 cut(s) 308
Hin1II CATG 6 cut(s) 39, 169, 637, 806, 826, 847
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 8 cut(s) 130, 158, 462, 472, 479, 637, 647, 836
HpaII CCGG 1 cut(s) 308
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 13, 458
Hpy188III TCNNGA 8 cut(s) 30, 327, 466, 476, 634, 674, 682, 803
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 2 cut(s) 100, 111
HpyAV CCTTC 5 cut(s) 63, 73, 99, 312, 619
HpyCH4III ACNGT 2 cut(s) 513, 800
HpyCH4V TGCA 4 cut(s) 437, 697, 725, 793
HpyF3I CTNAG 3 cut(s) 48, 447, 767
Hsp92II CATG 6 cut(s) 39, 169, 637, 806, 826, 847
Ksp22I TGATCA 1 cut(s) 846
Kzo9I GATC 4 cut(s) 8, 442, 579, 846
LpnPI CCDG 7 cut(s) 238, 321, 343, 359, 370, 647, 855
Lsp1109I GCAGC 2 cut(s) 497, 709
LweI GCATC 1 cut(s) 361
MaeI CTAG 1 cut(s) 362
MaeIII GTNAC 4 cut(s) 281, 311, 416, 507
MalI GATC 4 cut(s) 10, 444, 581, 848
MboI GATC 4 cut(s) 8, 442, 579, 846
MboII GAAGA 7 cut(s) 153, 220, 315, 471, 481, 514, 634
MfeI CAATTG 1 cut(s) 850
MflI RGATCY 2 cut(s) 8, 442
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 6 cut(s) 112, 395, 642, 729, 806, 850
MlyI GAGTC 3 cut(s) 152, 488, 830
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 4 cut(s) 79, 162, 204, 424
MseI TTAA 6 cut(s) 174, 426, 494, 522, 728, 876
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 3 cut(s) 309, 358, 870
MunI CAATTG 1 cut(s) 850
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 2 cut(s) 358, 870
NciI CCSGG 1 cut(s) 309
NcoI CCATGG 1 cut(s) 35
NdeII GATC 4 cut(s) 8, 442, 579, 846
NlaIII CATG 6 cut(s) 39, 169, 637, 806, 826, 847
NlaIV GGNNCC 3 cut(s) 10, 235, 444
NmuCI GTSAC 1 cut(s) 281
NspV TTCGAA 2 cut(s) 640, 734
PagI TCATGA 2 cut(s) 633, 802
PctI GAATGC 1 cut(s) 355
PfeI GAWTC 5 cut(s) 130, 462, 472, 637, 647
PflMI CCANNNNNTGG 1 cut(s) 869
PkrI GCNGC 2 cut(s) 487, 724
PleI GAGTC 3 cut(s) 152, 487, 830
PpsI GAGTC 3 cut(s) 152, 487, 830
PshAI GACNNNNGTC 1 cut(s) 37
PshBI ATTAAT 1 cut(s) 728
Psp6I CCWGG 2 cut(s) 356, 868
PspGI CCWGG 2 cut(s) 356, 868
PspN4I GGNNCC 3 cut(s) 10, 235, 444
PspPI GGNCC 1 cut(s) 233
PsuI RGATCY 2 cut(s) 8, 442
SaqAI TTAA 6 cut(s) 174, 426, 494, 522, 728, 876
SatI GCNGC 2 cut(s) 486, 723
Sau3AI GATC 4 cut(s) 8, 442, 579, 846
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 3 cut(s) 152, 488, 830
ScrFI CCNGG 3 cut(s) 309, 358, 870
SduI GDGCHC 1 cut(s) 89
SetI ASST 6 cut(s) 173, 297, 435, 588, 724, 768
SfaNI GCATC 1 cut(s) 361
SfcI CTRYAG 1 cut(s) 250
SfuI TTCGAA 2 cut(s) 640, 734
SinI GGWCC 1 cut(s) 233
Sse9I AATT 6 cut(s) 112, 395, 642, 729, 806, 850
SsiI CCGC 1 cut(s) 483
SspI AATATT 1 cut(s) 570
SspMI CTAG 1 cut(s) 362
StyD4I CCNGG 3 cut(s) 307, 356, 868
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 2 cut(s) 513, 800
TaqI TCGA 6 cut(s) 41, 475, 640, 650, 734, 810
TasI AATT 6 cut(s) 112, 395, 642, 729, 806, 850
TfiI GAWTC 5 cut(s) 130, 462, 472, 637, 647
Tru1I TTAA 6 cut(s) 174, 426, 494, 522, 728, 876
Tru9I TTAA 6 cut(s) 174, 426, 494, 522, 728, 876
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 2 cut(s) 485, 722
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 6 cut(s) 17, 105, 143, 408, 629, 819
TspGWI ACGGA 4 cut(s) 15, 84, 123, 714
Van91I CCANNNNNTGG 1 cut(s) 869
VpaK11BI GGWCC 1 cut(s) 233
VspI ATTAAT 1 cut(s) 728
XapI RAATTY 1 cut(s) 806
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.