BEST Arabidopsis thaliana protein match is Basic-leucine zipper (bZIP) transcription factor family protein (TAIR
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 488 |
| AciI | CCGC | 2 cut(s) | 486, 488 |
| AclI | AACGTT | 1 cut(s) | 318 |
| AclWI | GGATC | 4 cut(s) | 3, 16, 440, 453 |
| AfaI | GTAC | 1 cut(s) | 421 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 36 |
| AflIII | ACRYGT | 1 cut(s) | 783 |
| AluBI | AGCT | 3 cut(s) | 364, 589, 725 |
| AluI | AGCT | 3 cut(s) | 364, 589, 725 |
| Alw21I | GWGCWC | 1 cut(s) | 220 |
| Alw26I | GTCTC | 2 cut(s) | 150, 241 |
| AlwI | GGATC | 4 cut(s) | 3, 16, 440, 453 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 679, 711 |
| AseI | ATTAAT | 1 cut(s) | 731 |
| AsuII | TTCGAA | 2 cut(s) | 643, 737 |
| AxyI | CCTNAGG | 1 cut(s) | 450 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 366, 399 |
| BamHI | GGATCC | 2 cut(s) | 8, 445 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 145, 177 |
| Bbv12I | GWGCWC | 1 cut(s) | 220 |
| BccI | CCATC | 1 cut(s) | 335 |
| BcoDI | GTCTC | 2 cut(s) | 150, 241 |
| BfaI | CTAG | 1 cut(s) | 771 |
| BfmI | CTRYAG | 1 cut(s) | 253 |
| BisI | GCNGC | 1 cut(s) | 489 |
| BlsI | GCNGC | 1 cut(s) | 490 |
| BmiI | GGNNCC | 2 cut(s) | 10, 447 |
| BmsI | GCATC | 2 cut(s) | 449, 670 |
| BoxI | GACNNNNGTC | 1 cut(s) | 37 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 76, 108 |
| Bpu14I | TTCGAA | 2 cut(s) | 643, 737 |
| BpuEI | CTTGAG | 2 cut(s) | 386, 572 |
| BsaAI | YACGTR | 1 cut(s) | 703 |
| BsaJI | CCNNGG | 2 cut(s) | 35, 486 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 36 |
| Bse1I | ACTGG | 1 cut(s) | 378 |
| Bse21I | CCTNAGG | 1 cut(s) | 450 |
| BseDI | CCNNGG | 2 cut(s) | 35, 486 |
| BseGI | GGATG | 3 cut(s) | 101, 621, 781 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 36 |
| BseMII | CTCAG | 1 cut(s) | 62 |
| BseNI | ACTGG | 1 cut(s) | 378 |
| Bsh1236I | CGCG | 1 cut(s) | 488 |
| Bsh1285I | CGRYCG | 1 cut(s) | 41 |
| BsiEI | CGRYCG | 1 cut(s) | 41 |
| BsiHKAI | GWGCWC | 1 cut(s) | 220 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 36 |
| BsmAI | GTCTC | 2 cut(s) | 150, 241 |
| Bsp119I | TTCGAA | 2 cut(s) | 643, 737 |
| Bsp1286I | GDGCHC | 1 cut(s) | 220 |
| Bsp143I | GATC | 4 cut(s) | 8, 332, 445, 582 |
| BspACI | CCGC | 2 cut(s) | 486, 488 |
| BspCNI | CTCAG | 1 cut(s) | 61 |
| BspFNI | CGCG | 1 cut(s) | 488 |
| BspHI | TCATGA | 1 cut(s) | 636 |
| BspLI | GGNNCC | 2 cut(s) | 10, 447 |
| BspPI | GGATC | 4 cut(s) | 3, 16, 440, 453 |
| BspQI | GCTCTTC | 1 cut(s) | 208 |
| BspT104I | TTCGAA | 2 cut(s) | 643, 737 |
| BsrI | ACTGG | 1 cut(s) | 378 |
| BssECI | CCNNGG | 2 cut(s) | 35, 486 |
| BssMI | GATC | 4 cut(s) | 8, 332, 445, 582 |
| Bst4CI | ACNGT | 1 cut(s) | 39 |
| Bst6I | CTCTTC | 5 cut(s) | 73, 166, 203, 208, 331 |
| BstBAI | YACGTR | 1 cut(s) | 703 |
| BstBI | TTCGAA | 2 cut(s) | 643, 737 |
| BstDEI | CTNAG | 2 cut(s) | 48, 450 |
| BstDSI | CCRYGG | 2 cut(s) | 35, 486 |
| BstF5I | GGATG | 3 cut(s) | 101, 621, 781 |
| BstFNI | CGCG | 1 cut(s) | 488 |
| BstKTI | GATC | 4 cut(s) | 11, 335, 448, 585 |
| BstMAI | GTCTC | 2 cut(s) | 150, 241 |
| BstMBI | GATC | 4 cut(s) | 8, 332, 445, 582 |
| BstMCI | CGRYCG | 1 cut(s) | 41 |
| BstNSI | RCATGY | 1 cut(s) | 787 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 37 |
| BstSFI | CTRYAG | 1 cut(s) | 253 |
| BstUI | CGCG | 1 cut(s) | 488 |
| BstX2I | RGATCY | 2 cut(s) | 8, 445 |
| BstYI | RGATCY | 2 cut(s) | 8, 445 |
| Bsu36I | CCTNAGG | 1 cut(s) | 450 |
| BtgI | CCRYGG | 2 cut(s) | 35, 486 |
| BtsCI | GGATG | 3 cut(s) | 101, 621, 781 |
| BtsIMutI | CAGTG | 2 cut(s) | 273, 385 |
| CciI | TCATGA | 1 cut(s) | 636 |
| Cfr42I | CCGCGG | 1 cut(s) | 489 |
| Csp6I | GTAC | 1 cut(s) | 420 |
| CviAII | CATG | 2 cut(s) | 637, 784 |
| CviJI | RGCY | 5 cut(s) | 52, 364, 589, 718, 725 |
| CviKI_1 | RGCY | 5 cut(s) | 52, 364, 589, 718, 725 |
| CviQI | GTAC | 1 cut(s) | 420 |
| DdeI | CTNAG | 2 cut(s) | 48, 450 |
| DpnI | GATC | 4 cut(s) | 10, 334, 447, 584 |
| DpnII | GATC | 4 cut(s) | 8, 332, 445, 582 |
| Eam1104I | CTCTTC | 5 cut(s) | 73, 166, 203, 208, 331 |
| EarI | CTCTTC | 5 cut(s) | 73, 166, 203, 208, 331 |
| Eco81I | CCTNAGG | 1 cut(s) | 450 |
| FaeI | CATG | 2 cut(s) | 640, 787 |
| FaiI | YATR | 5 cut(s) | 387, 519, 521, 638, 785 |
| FatI | CATG | 2 cut(s) | 636, 783 |
| Fnu4HI | GCNGC | 1 cut(s) | 489 |
| FokI | GGATG | 2 cut(s) | 88, 628 |
| Fsp4HI | GCNGC | 1 cut(s) | 489 |
| FspBI | CTAG | 1 cut(s) | 771 |
| GluI | GCNGC | 1 cut(s) | 489 |
| Hin1II | CATG | 2 cut(s) | 640, 787 |
| HindIII | AAGCTT | 1 cut(s) | 587 |
| HinfI | GANTC | 7 cut(s) | 85, 158, 259, 465, 482, 640, 650 |
| Hpy188I | TCNGA | 5 cut(s) | 13, 312, 361, 445, 461 |
| Hpy188III | TCNNGA | 8 cut(s) | 30, 244, 330, 469, 479, 551, 637, 677 |
| Hpy99I | CGWCG | 2 cut(s) | 100, 111 |
| HpyAV | CCTTC | 6 cut(s) | 36, 63, 73, 99, 315, 622 |
| HpyCH4III | ACNGT | 1 cut(s) | 39 |
| HpyCH4IV | ACGT | 3 cut(s) | 318, 493, 702 |
| HpyCH4V | TGCA | 2 cut(s) | 440, 700 |
| HpyF3I | CTNAG | 2 cut(s) | 48, 450 |
| HpySE526I | ACGT | 3 cut(s) | 318, 493, 702 |
| Hsp92II | CATG | 2 cut(s) | 640, 787 |
| KspI | CCGCGG | 1 cut(s) | 489 |
| Kzo9I | GATC | 4 cut(s) | 8, 332, 445, 582 |
| LguI | GCTCTTC | 1 cut(s) | 208 |
| LmnI | GCTCC | 1 cut(s) | 658 |
| LpnPI | CCDG | 2 cut(s) | 241, 391 |
| LweI | GCATC | 2 cut(s) | 449, 670 |
| MaeI | CTAG | 1 cut(s) | 771 |
| MaeII | ACGT | 3 cut(s) | 318, 493, 702 |
| MaeIII | GTNAC | 2 cut(s) | 284, 510 |
| MalI | GATC | 4 cut(s) | 10, 334, 447, 584 |
| MboI | GATC | 4 cut(s) | 8, 332, 445, 582 |
| MboII | GAAGA | 9 cut(s) | 60, 153, 190, 220, 225, 318, 474, 517, 637 |
| MflI | RGATCY | 2 cut(s) | 8, 445 |
| MhlI | GDGCHC | 1 cut(s) | 220 |
| MluCI | AATT | 5 cut(s) | 112, 398, 645, 708, 732 |
| MlyI | GAGTC | 4 cut(s) | 94, 152, 268, 491 |
| MmeI | TCCRAC | 1 cut(s) | 36 |
| MnlI | CCTC | 5 cut(s) | 204, 312, 334, 427, 606 |
| MseI | TTAA | 4 cut(s) | 174, 429, 525, 731 |
| MspA1I | CMGCKG | 1 cut(s) | 488 |
| MvnI | CGCG | 1 cut(s) | 488 |
| NdeII | GATC | 4 cut(s) | 8, 332, 445, 582 |
| NlaIII | CATG | 2 cut(s) | 640, 787 |
| NlaIV | GGNNCC | 2 cut(s) | 10, 447 |
| NmuCI | GTSAC | 1 cut(s) | 284 |
| NspI | RCATGY | 1 cut(s) | 787 |
| NspV | TTCGAA | 2 cut(s) | 643, 737 |
| PagI | TCATGA | 1 cut(s) | 636 |
| PciI | ACATGT | 1 cut(s) | 783 |
| PciSI | GCTCTTC | 1 cut(s) | 208 |
| PfeI | GAWTC | 3 cut(s) | 465, 640, 650 |
| PkrI | GCNGC | 1 cut(s) | 490 |
| PleI | GAGTC | 4 cut(s) | 93, 152, 267, 490 |
| PpsI | GAGTC | 4 cut(s) | 93, 152, 267, 490 |
| Ppu21I | YACGTR | 1 cut(s) | 703 |
| PscI | ACATGT | 1 cut(s) | 783 |
| PshAI | GACNNNNGTC | 1 cut(s) | 37 |
| PshBI | ATTAAT | 1 cut(s) | 731 |
| Psp1406I | AACGTT | 1 cut(s) | 318 |
| PspN4I | GGNNCC | 2 cut(s) | 10, 447 |
| PsuI | RGATCY | 2 cut(s) | 8, 445 |
| RsaI | GTAC | 1 cut(s) | 421 |
| RsaNI | GTAC | 1 cut(s) | 420 |
| SacII | CCGCGG | 1 cut(s) | 489 |
| SapI | GCTCTTC | 1 cut(s) | 208 |
| SaqAI | TTAA | 4 cut(s) | 174, 429, 525, 731 |
| SatI | GCNGC | 1 cut(s) | 489 |
| Sau3AI | GATC | 4 cut(s) | 8, 332, 445, 582 |
| SchI | GAGTC | 4 cut(s) | 94, 152, 268, 491 |
| SduI | GDGCHC | 1 cut(s) | 220 |
| SetI | ASST | 8 cut(s) | 241, 321, 366, 438, 496, 591, 705, 727 |
| SfaNI | GCATC | 2 cut(s) | 449, 670 |
| SfcI | CTRYAG | 1 cut(s) | 253 |
| Sfr303I | CCGCGG | 1 cut(s) | 489 |
| SfuI | TTCGAA | 2 cut(s) | 643, 737 |
| SgrBI | CCGCGG | 1 cut(s) | 489 |
| SmlI | CTYRAG | 2 cut(s) | 365, 551 |
| SmoI | CTYRAG | 2 cut(s) | 365, 551 |
| Sse9I | AATT | 5 cut(s) | 112, 398, 645, 708, 732 |
| SsiI | CCGC | 2 cut(s) | 486, 488 |
| SspI | AATATT | 1 cut(s) | 573 |
| SspMI | CTAG | 1 cut(s) | 771 |
| TaaI | ACNGT | 1 cut(s) | 39 |
| TaiI | ACGT | 3 cut(s) | 321, 496, 705 |
| TaqI | TCGA | 3 cut(s) | 41, 643, 737 |
| TaqII | GACCGA | 1 cut(s) | 704 |
| TasI | AATT | 5 cut(s) | 112, 398, 645, 708, 732 |
| TauI | GCSGC | 1 cut(s) | 491 |
| TfiI | GAWTC | 3 cut(s) | 465, 640, 650 |
| Tru1I | TTAA | 4 cut(s) | 174, 429, 525, 731 |
| Tru9I | TTAA | 4 cut(s) | 174, 429, 525, 731 |
| TscAI | CASTG | 2 cut(s) | 273, 385 |
| TseFI | GTSAC | 1 cut(s) | 284 |
| Tsp45I | GTSAC | 1 cut(s) | 284 |
| TspDTI | ATGAA | 5 cut(s) | 17, 143, 411, 632, 768 |
| TspGWI | ACGGA | 1 cut(s) | 84 |
| TspRI | CASTG | 2 cut(s) | 273, 385 |
| VspI | ATTAAT | 1 cut(s) | 731 |
| XceI | RCATGY | 1 cut(s) | 787 |
| XspI | CTAG | 1 cut(s) | 771 |