AT2G15760

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015064
Physical Location & Seq
Reverse (-)
6865610 .. 6867004
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G15760.1

Sequence Viewer

Length: 948 bp
ATGGAGATAGAAGTGGCAGAAGCAGCAGCAGCAGAACTCAATTTTGACAGCACAACTTCGTCTCCTTACATAACAGCTCCTTCGAGCCCAACTCGATTTGGCAACAACTTTTTCAGTGCACCAACAAGCCCTTCTCCTTCCACTTCCTCTAACATACCTTTTGATTGGGATGACCAACCAAGAACTCCCAAGAAGAGATCAGCCATCGGTTTCGAAGACGATTTTGAGTTCAATTTCAGTGGTCAGTTGGAGAAAACTTCTTTCTCTGCAGCTGATGAGCTCTTTGATGGAGGAAAGATTCGTCCTTTAAGGACACCTCTCACTCCTACTGTTTCTTCTCCTAGATCTAGGGGTCTTGAGATAGAAGATTCGGATGATCAGAAAGATCGAGGAAGAGACCGGTCACCAGGATCTTCTTCTTCGCGTTATGATCGTAAAGGAAGCCGTTCTATGTCTCCGTTAAGGGTTTCAGACATTATGGTTGATGAAGAAGAAGAAGTACAATCAACAAAAATGGTTGCTTCCAACACAAGTAATCAAAAATCCTCTGTTTTCTTGTCAGCAATTCTGTTCCCTGGTCGTGCATATAAGAAGTGGAAACTCAAAGATCTGTTGCTATTCAGGAGTGCATCGGATGGAAGACCGATTCCGACCAAAGAGTCTTTAAATAGGTACGATATACTTACAAAGAAAGATGCCGAGGAAGTGAGAAATTCGAGTATCAGATCGAGAGAGAGTTGTGAATCTTCGGTGTCTAGGTCAAGGAGGAGGAACGGAGCGGTGGTTTCGGCTCACGAGATGCATTACACTGAGAACAGAGCAGTATCGGAAGAATTGAAGAGGAAGACATTCTTGCCGTACAAGCAAGGCTGGTTAGGCTGCTTAGGGTTTAACCCTGCGGTCAATGAAATTGCTAGAGTTGGGTCATTGTCACGTGCTTCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

315

Amino Acids

35.05

Weight (kDa)

8.75

Isoelectric Point (pI)

78.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 91 - 286 2.8e-46 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15760
fragaria_vesca FvH4_2g06670
malus_domestica MD10G1090600.v1.1
prunus_persica Prupe.8G119300_v2.0.a1
pyrus_communis pycom05g06930 pycom10g07410
rosa_chinensis RchiOBHm_Chr6g0258711
rosa_laevigata RLG00000014587
rosa_multiflora Rmu_ssc0000014.1_g000003
rosa_roxburghii Rroxscaffold_7G00206040
rosa_rugosa Rorug05G0583100
rosa_samantha Rh6AG099500 Rh6BG091200 Rh6CG088600 Rh6DG082800
rosa_wichuraiana Rw6G008640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 658
AccBSI CCGCTC 1 cut(s) 779
AccII CGCG 1 cut(s) 424
AciI CCGC 2 cut(s) 779, 899
AclWI GGATC 1 cut(s) 418
AcsI RAATTY 1 cut(s) 712
AcvI CACGTG 1 cut(s) 935
AfaI GTAC 3 cut(s) 501, 674, 860
AgeI ACCGGT 1 cut(s) 399
AgsI TTSAA 2 cut(s) 232, 838
AjnI CCWGG 2 cut(s) 406, 574
AjuI GAANNNNNNNTTGG 2 cut(s) 115, 147
AluBI AGCT 3 cut(s) 77, 272, 280
AluI AGCT 3 cut(s) 77, 272, 280
Alw21I GWGCWC 2 cut(s) 121, 282
Alw26I GTCTC 3 cut(s) 66, 390, 459
Alw44I GTGCAC 1 cut(s) 117
AlwI GGATC 1 cut(s) 418
ApaLI GTGCAC 1 cut(s) 117
ApeKI GCWGC 5 cut(s) 23, 26, 29, 269, 879
ApoI RAATTY 1 cut(s) 712
AsiGI ACCGGT 1 cut(s) 399
Asp700I GAANNNNTTC 2 cut(s) 445, 848
AsuHPI GGTGA 1 cut(s) 396
AsuII TTCGAA 1 cut(s) 213
BaeGI GKGCMC 1 cut(s) 121
BanII GRGCYC 2 cut(s) 89, 282
BarI GAAGNNNNNNTAC 2 cut(s) 483, 515
BauI CACGAG 1 cut(s) 794
BbrPI CACGTG 1 cut(s) 935
BbsI GAAGAC 3 cut(s) 222, 646, 851
Bbv12I GWGCWC 2 cut(s) 121, 282
BbvI GCAGC 5 cut(s) 35, 38, 41, 281, 866
BccI CCATC 3 cut(s) 212, 281, 629
BceAI ACGGC 2 cut(s) 429, 841
BciT130I CCWGG 2 cut(s) 408, 576
BclI TGATCA 1 cut(s) 376
BcoDI GTCTC 3 cut(s) 66, 390, 459
BfaI CTAG 4 cut(s) 342, 348, 756, 915
BfmI CTRYAG 1 cut(s) 267
BglII AGATCT 2 cut(s) 344, 607
BisI GCNGC 5 cut(s) 24, 27, 30, 270, 880
BlsI GCNGC 5 cut(s) 25, 28, 31, 271, 881
Bme1390I CCNGG 2 cut(s) 408, 576
BmrFI CCNGG 2 cut(s) 408, 576
BmsI GCATC 3 cut(s) 638, 685, 789
BpiI GAAGAC 3 cut(s) 222, 646, 851
BplI GAGNNNNNCTC 2 cut(s) 76, 108
Bpu10I CCTNAGC 1 cut(s) 883
Bpu14I TTCGAA 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 377
BsaAI YACGTR 1 cut(s) 935
BsaI GGTCTC 1 cut(s) 390
BsaJI CCNNGG 2 cut(s) 574, 699
BsaWI WCCGGW 1 cut(s) 399
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 768, 798
Bse118I RCCGGY 1 cut(s) 399
BseBI CCWGG 2 cut(s) 408, 576
BseDI CCNNGG 2 cut(s) 574, 699
BseGI GGATG 3 cut(s) 175, 379, 640
BseMII CTCAG 1 cut(s) 801
BseRI GAGGAG 1 cut(s) 781
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 5 cut(s) 35, 38, 41, 281, 866
Bsh1236I CGCG 1 cut(s) 424
BshTI ACCGGT 1 cut(s) 399
BsiHKAI GWGCWC 2 cut(s) 121, 282
BsiSI CCGG 1 cut(s) 400
BsmAI GTCTC 3 cut(s) 66, 390, 459
BsmBI CGTCTC 1 cut(s) 66
Bso31I GGTCTC 1 cut(s) 390
Bsp119I TTCGAA 1 cut(s) 213
Bsp1286I GDGCHC 3 cut(s) 89, 121, 282
Bsp143I GATC 8 cut(s) 197, 344, 376, 385, 410, 430, 607, 725
BspACI CCGC 2 cut(s) 779, 899
BspCNI CTCAG 1 cut(s) 802
BspFNI CGCG 1 cut(s) 424
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 1 cut(s) 418
BspT104I TTCGAA 1 cut(s) 213
BspTNI GGTCTC 1 cut(s) 390
BsrBI CCGCTC 1 cut(s) 779
BsrFI RCCGGY 1 cut(s) 399
BssAI RCCGGY 1 cut(s) 399
BssECI CCNNGG 2 cut(s) 574, 699
BssMI GATC 8 cut(s) 197, 344, 376, 385, 410, 430, 607, 725
BssSI CACGAG 1 cut(s) 794
Bst2BI CACGAG 1 cut(s) 794
Bst2UI CCWGG 2 cut(s) 408, 576
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 3 cut(s) 188, 388, 833
BstBAI YACGTR 1 cut(s) 935
BstBI TTCGAA 1 cut(s) 213
BstDEI CTNAG 2 cut(s) 810, 883
BstEII GGTNACC 1 cut(s) 402
BstF5I GGATG 3 cut(s) 175, 379, 640
BstFNI CGCG 1 cut(s) 424
BstKTI GATC 8 cut(s) 200, 347, 379, 388, 413, 433, 610, 728
BstMAI GTCTC 3 cut(s) 66, 390, 459
BstMBI GATC 8 cut(s) 197, 344, 376, 385, 410, 430, 607, 725
BstMWI GCNNNNNNNGC 4 cut(s) 23, 29, 862, 876
BstNI CCWGG 2 cut(s) 408, 576
BstPI GGTNACC 1 cut(s) 402
BstSCI CCNGG 2 cut(s) 406, 574
BstSFI CTRYAG 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 121
BstUI CGCG 1 cut(s) 424
BstV1I GCAGC 5 cut(s) 35, 38, 41, 281, 866
BstV2I GAAGAC 3 cut(s) 222, 646, 851
BstX2I RGATCY 3 cut(s) 344, 410, 607
BstYI RGATCY 3 cut(s) 344, 410, 607
BtsCI GGATG 3 cut(s) 175, 379, 640
BtsIMutI CAGTG 3 cut(s) 121, 244, 807
Cfr10I RCCGGY 1 cut(s) 399
Csp6I GTAC 3 cut(s) 500, 673, 859
CspAI ACCGGT 1 cut(s) 399
CspCI CAANNNNNGTGG 2 cut(s) 220, 255
CviQI GTAC 3 cut(s) 500, 673, 859
DdeI CTNAG 2 cut(s) 810, 883
DpnI GATC 8 cut(s) 199, 346, 378, 387, 412, 432, 609, 727
DpnII GATC 8 cut(s) 197, 344, 376, 385, 410, 430, 607, 725
DraI TTTAAA 1 cut(s) 666
DrdI GACNNNNNNGTC 1 cut(s) 658
DseDI GACNNNNNNGTC 1 cut(s) 658
Eam1104I CTCTTC 3 cut(s) 188, 388, 833
EarI CTCTTC 3 cut(s) 188, 388, 833
Ecl136II GAGCTC 1 cut(s) 280
Eco24I GRGCYC 2 cut(s) 89, 282
Eco31I GGTCTC 1 cut(s) 390
Eco53kI GAGCTC 1 cut(s) 280
Eco72I CACGTG 1 cut(s) 935
Eco91I GGTNACC 1 cut(s) 402
EcoICRI GAGCTC 1 cut(s) 280
EcoO65I GGTNACC 1 cut(s) 402
EcoRII CCWGG 2 cut(s) 406, 574
EcoT22I ATGCAT 1 cut(s) 804
EcoT38I GRGCYC 2 cut(s) 89, 282
Esp3I CGTCTC 1 cut(s) 66
FaiI YATR 8 cut(s) 71, 155, 429, 452, 479, 586, 588, 680
FalI AAGNNNNNCTT 2 cut(s) 836, 868
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 5 cut(s) 24, 27, 30, 270, 880
FokI GGATG 3 cut(s) 182, 386, 647
FriOI GRGCYC 2 cut(s) 89, 282
Fsp4HI GCNGC 5 cut(s) 24, 27, 30, 270, 880
FspBI CTAG 4 cut(s) 342, 348, 756, 915
GluI GCNGC 5 cut(s) 24, 27, 30, 270, 880
HapII CCGG 1 cut(s) 400
HinfI GANTC 5 cut(s) 298, 368, 646, 659, 743
HpaII CCGG 1 cut(s) 400
HphI GGTGA 1 cut(s) 396
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 7 cut(s) 373, 381, 472, 634, 651, 725, 829
Hpy188III TCNNGA 5 cut(s) 356, 622, 729, 794, 945
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 3 cut(s) 90, 141, 147
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 1 cut(s) 934
HpyCH4V TGCA 5 cut(s) 119, 269, 584, 629, 802
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 29, 862, 876
HpyF3I CTNAG 2 cut(s) 810, 883
HpySE526I ACGT 1 cut(s) 934
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 8 cut(s) 197, 344, 376, 385, 410, 430, 607, 725
LmnI GCTCC 2 cut(s) 82, 776
LpnPI CCDG 8 cut(s) 393, 413, 420, 561, 588, 607, 856, 909
Lsp1109I GCAGC 5 cut(s) 35, 38, 41, 281, 866
LweI GCATC 3 cut(s) 638, 685, 789
MaeI CTAG 4 cut(s) 342, 348, 756, 915
MaeII ACGT 1 cut(s) 934
MaeIII GTNAC 2 cut(s) 402, 930
MalI GATC 8 cut(s) 199, 346, 378, 387, 412, 432, 609, 727
MbiI CCGCTC 1 cut(s) 779
MboI GATC 8 cut(s) 197, 344, 376, 385, 410, 430, 607, 725
MflI RGATCY 3 cut(s) 344, 410, 607
MhlI GDGCHC 3 cut(s) 89, 121, 282
MluCI AATT 6 cut(s) 40, 232, 564, 712, 833, 909
MlyI GAGTC 1 cut(s) 668
MmeI TCCRAC 3 cut(s) 228, 549, 674
MnlI CCTC 9 cut(s) 157, 284, 327, 383, 556, 694, 759, 762, 834
Mph1103I ATGCAT 1 cut(s) 804
MroXI GAANNNNTTC 2 cut(s) 445, 848
MseI TTAA 4 cut(s) 308, 461, 665, 891
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 1 cut(s) 400
MspR9I CCNGG 2 cut(s) 408, 576
MvaI CCWGG 2 cut(s) 408, 576
MvnI CGCG 1 cut(s) 424
MwoI GCNNNNNNNGC 4 cut(s) 23, 29, 862, 876
NdeII GATC 8 cut(s) 197, 344, 376, 385, 410, 430, 607, 725
NmeAIII GCCGAG 1 cut(s) 724
NmuCI GTSAC 2 cut(s) 402, 930
NsiI ATGCAT 1 cut(s) 804
NspV TTCGAA 1 cut(s) 213
PdmI GAANNNNTTC 2 cut(s) 445, 848
PfeI GAWTC 4 cut(s) 298, 368, 646, 743
PinAI ACCGGT 1 cut(s) 399
PkrI GCNGC 5 cut(s) 25, 28, 31, 271, 881
PleI GAGTC 1 cut(s) 667
PmaCI CACGTG 1 cut(s) 935
PmlI CACGTG 1 cut(s) 935
PpsI GAGTC 1 cut(s) 667
Ppu21I YACGTR 1 cut(s) 935
Psp124BI GAGCTC 1 cut(s) 282
Psp6I CCWGG 2 cut(s) 406, 574
PspCI CACGTG 1 cut(s) 935
PspEI GGTNACC 1 cut(s) 402
PspGI CCWGG 2 cut(s) 406, 574
PstI CTGCAG 1 cut(s) 271
PsuI RGATCY 3 cut(s) 344, 410, 607
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 3 cut(s) 501, 674, 860
RsaNI GTAC 3 cut(s) 500, 673, 859
SacI GAGCTC 1 cut(s) 282
SaqAI TTAA 4 cut(s) 308, 461, 665, 891
SatI GCNGC 5 cut(s) 24, 27, 30, 270, 880
Sau3AI GATC 8 cut(s) 197, 344, 376, 385, 410, 430, 607, 725
SchI GAGTC 1 cut(s) 668
ScrFI CCNGG 2 cut(s) 408, 576
SduI GDGCHC 3 cut(s) 89, 121, 282
SetI ASST 8 cut(s) 79, 160, 274, 282, 319, 674, 761, 937
SfaNI GCATC 3 cut(s) 638, 685, 789
SfcI CTRYAG 1 cut(s) 267
SfuI TTCGAA 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 6 cut(s) 40, 232, 564, 712, 833, 909
SsiI CCGC 2 cut(s) 779, 899
SspMI CTAG 4 cut(s) 342, 348, 756, 915
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 2 cut(s) 406, 574
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 1 cut(s) 937
TaqI TCGA 6 cut(s) 83, 94, 213, 388, 716, 728
TaqII GACCGA 1 cut(s) 658
TasI AATT 6 cut(s) 40, 232, 564, 712, 833, 909
TatI WGTACW 1 cut(s) 499
TfiI GAWTC 4 cut(s) 298, 368, 646, 743
Tru1I TTAA 4 cut(s) 308, 461, 665, 891
Tru9I TTAA 4 cut(s) 308, 461, 665, 891
TscAI CASTG 3 cut(s) 121, 244, 814
TseFI GTSAC 2 cut(s) 402, 930
TseI GCWGC 5 cut(s) 23, 26, 29, 269, 879
Tsp45I GTSAC 2 cut(s) 402, 930
TspDTI ATGAA 2 cut(s) 501, 921
TspGWI ACGGA 2 cut(s) 447, 789
TspRI CASTG 3 cut(s) 121, 244, 814
VneI GTGCAC 1 cut(s) 117
XapI RAATTY 1 cut(s) 712
XmnI GAANNNNTTC 2 cut(s) 445, 848
XspI CTAG 4 cut(s) 342, 348, 756, 915
Zsp2I ATGCAT 1 cut(s) 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.