AT2G18370

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
7980532 .. 7981868
1337 bp
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UTR
Exon/CDS
Intron
AT2G18370.1

Sequence Viewer

Length: 351 bp
ATGAATGTATTGAAATGTCTAGCGATCATTTCCGTTCTCGGAATATTCTTCATACCTCGTTATTCTGAATCCGCTATATCTTGCAGTGTTGTGTTACAGGATTTGCAGCCATGTGTGAGCTACTTGACCAGCGGAAGTGGAAACCCTCCGGAGACTTGTTGCGACGGAGTTAAGAGTTTAGCGGCGGCAACCACCACATCTGCCGATAAGAAGGCAGCTTGTCAATGCATCAAGTCAGTGGCTAATAGTGTTACCGTGAAGCCTGAATTGGCTCAAGCCCTTGCTAGCAATTGTGGTGCGAGCTTGCCCGTTGATGCTTCTCCTACTGTCGACTGCACTACTGTTGGTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

11.79

Weight (kDa)

5.09

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 20 - 103 1e-08 Probable lipid transfer
Tryp_alpha_amyl PF00234 28 - 110 5.2e-12 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18370
malus_domestica MD00G1187200.v1.1
prunus_persica Prupe.2G000900_v2.0.a1
pyrus_communis pycom02g26910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 330
AccIII TCCGGA 1 cut(s) 148
AciI CCGC 4 cut(s) 72, 132, 182, 185
AgsI TTSAA 1 cut(s) 13
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AluBI AGCT 3 cut(s) 120, 218, 303
AluI AGCT 3 cut(s) 120, 218, 303
Alw26I GTCTC 1 cut(s) 146
Aor13HI TCCGGA 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 106, 215
AsuNHI GCTAGC 1 cut(s) 284
BbvI GCAGC 2 cut(s) 118, 227
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 2 cut(s) 20, 285
BisI GCNGC 4 cut(s) 107, 183, 186, 216
BlsI GCNGC 4 cut(s) 108, 184, 187, 217
BmsI GCATC 2 cut(s) 237, 304
BmtI GCTAGC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 148
BseAI TCCGGA 1 cut(s) 148
BseXI GCAGC 2 cut(s) 118, 227
BsgI GTGCAG 1 cut(s) 319
BsiSI CCGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 146
Bsp13I TCCGGA 1 cut(s) 148
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 4 cut(s) 72, 132, 182, 185
BspEI TCCGGA 1 cut(s) 148
BspOI GCTAGC 1 cut(s) 288
BssMI GATC 1 cut(s) 24
Bst4CI ACNGT 3 cut(s) 256, 328, 343
BstC8I GCNNGC 3 cut(s) 286, 301, 305
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 118, 227
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 2 cut(s) 91, 243
Cac8I GCNNGC 3 cut(s) 286, 301, 305
CviAII CATG 1 cut(s) 111
CviJI RGCY 8 cut(s) 109, 120, 218, 242, 262, 272, 278, 303
CviKI_1 RGCY 8 cut(s) 109, 120, 218, 242, 262, 272, 278, 303
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 230
FaeI CATG 1 cut(s) 114
FaiI YATR 3 cut(s) 53, 77, 112
FatI CATG 1 cut(s) 110
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 4 cut(s) 107, 183, 186, 216
Fsp4HI GCNGC 4 cut(s) 107, 183, 186, 216
FspBI CTAG 2 cut(s) 20, 285
GluI GCNGC 4 cut(s) 107, 183, 186, 216
HapII CCGG 1 cut(s) 149
Hin1II CATG 1 cut(s) 114
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HinfI GANTC 1 cut(s) 68
HpaII CCGG 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 2 cut(s) 41, 67
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 331
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 3 cut(s) 256, 328, 343
HpyCH4V TGCA 4 cut(s) 84, 106, 228, 336
Hsp92II CATG 1 cut(s) 114
Kpn2I TCCGGA 1 cut(s) 148
Kzo9I GATC 1 cut(s) 24
LpnPI CCDG 4 cut(s) 83, 142, 162, 276
Lsp1109I GCAGC 2 cut(s) 118, 227
LweI GCATC 2 cut(s) 237, 304
MaeI CTAG 2 cut(s) 20, 285
MaeIII GTNAC 2 cut(s) 93, 250
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 1 cut(s) 40
MfeI CAATTG 1 cut(s) 289
MluCI AATT 2 cut(s) 266, 289
MnlI CCTC 2 cut(s) 66, 156
Mph1103I ATGCAT 1 cut(s) 230
MroI TCCGGA 1 cut(s) 148
MseI TTAA 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 132
MspI CCGG 1 cut(s) 149
MunI CAATTG 1 cut(s) 289
NdeII GATC 1 cut(s) 24
NheI GCTAGC 1 cut(s) 284
NlaIII CATG 1 cut(s) 114
NsiI ATGCAT 1 cut(s) 230
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 4 cut(s) 108, 184, 187, 217
SalI GTCGAC 1 cut(s) 329
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 4 cut(s) 107, 183, 186, 216
Sau3AI GATC 1 cut(s) 24
SetI ASST 4 cut(s) 58, 122, 220, 305
SfaNI GCATC 2 cut(s) 237, 304
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 2 cut(s) 266, 289
SsiI CCGC 4 cut(s) 72, 132, 182, 185
SspI AATATT 1 cut(s) 45
SspMI CTAG 2 cut(s) 20, 285
TaaI ACNGT 3 cut(s) 256, 328, 343
TaqI TCGA 1 cut(s) 330
TasI AATT 2 cut(s) 266, 289
TauI GCSGC 2 cut(s) 185, 188
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 2 cut(s) 91, 243
TseI GCWGC 2 cut(s) 106, 215
TspDTI ATGAA 2 cut(s) 17, 40
TspGWI ACGGA 2 cut(s) 22, 180
TspRI CASTG 2 cut(s) 91, 243
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 2 cut(s) 20, 285
Zsp2I ATGCAT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.