AT2G19500

cytokinin dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013975
Physical Location & Seq
Reverse (-)
8444204 .. 8447355
3152 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19500.1

Sequence Viewer

Length: 1506 bp
ATGGCTAATCTTCGTTTAATGATCACTTTAATCACGGTTTTAATGATCACCAAATCATCAAACGGTATTAAAATTGATTTACCTAAATCCCTTAACCTCACCCTCTCTACCGATCCTTCCATCATCTCCGCAGCCTCTCATGACTTCGGAAACATAACCACCGTGACCCCCGGCGGCGTAATCTGCCCCTCCTCCACCGCTGATATCTCTCGTCTCCTCCAATACGCCGCAAACGGAAAAAGTACATTCCAAGTAGCGGCTCGTGGCCAAGGCCACTCCTTAAACGGCCAAGCCTCGGTCTCCGGCGGAGTAATCGTCAACATGACGTGTATCACTGACGTGGTGGTTTCAAAAGACAAGAAGTACGCTGACGTGGCGGCCGGGACGTTATGGGTGGATGTGCTTAAGAAGACGGCGGAGAAAGGGGTGTCGCCGGTTTCTTGGACGGATTATTTGCATATAACCGTCGGAGGAACGTTGTCGAATGGTGGAATTGGTGGTCAAGTGTTTCGAAACGGTCCTCTTGTTAGTAACGTCCTTGAATTGGACGTTATTACTGGGAAAGGTGAAATGTTGACATGCTCGCGACAGCTAAACCCAGAATTGTTCTATGGAGTGTTAGGAGGTTTGGGTCAATTTGGAATTATAACGAGAGCCAGAATTGTTTTGGACCATGCACCTAAACGGGCCAAATGGTTTCGGATGCTCTACAGTGATTTCACAACTTTTACAAAGGACCAAGAACGTTTGATATCAATGGCAAACGATATTGGAGTCGACTATTTAGAAGGTCAAATATTTCTATCAAACGGTGTCGTTGACACCTCTTTTTTCCCACCTTCAGATCAATCTAAAGTCGCTGATCTAGTCAAGCAACACGGTATCATCTATGTTCTTGAAGTAGCCAAGTATTATGATGATCCCAATCTCCCCATCATCAGCAAGGTTATTGACACATTAACGAAAACATTAAGTTACTTGCCCGGGTTCATATCAATGCACGACGTGGCCTACTTCGATTTCTTGAACCGTGTACATGTCGAAGAAAATAAACTCAGATCTTTGGGATTATGGGAACTTCCTCATCCTTGGCTTAACCTCTACGTTCCTAAATCTCGGATTCTCGATTTTCATAACGGTGTTGTCAAAGACATTCTTCTTAAGCAAAAATCAGCTTCGGGACTCGCTCTTCTCTATCCAACAAACCGGAATAAATGGGACAATCGTATGTCGGCGATGATACCAGAGATCGATGAAGATGTTATATATATTATCGGACTACTACAATCCGCTACCCCAAAGGATCTTCCAGAAGTGGAGAGCGTTAACGAGAAGATAATTAGGTTTTGCAAGGATTCAGGTATTAAGATTAAGCAATATCTAATGCATTATACTAGTAAAGAAGATTGGATTGAGCATTTTGGATCAAAATGGGATGATTTTTCGAAGAGGAAAGATCTATTTGATCCCAAGAAACTGTTATCTCCAGGGCAAGACATCTTTTGA

Protein Analysis

501

Amino Acids

55.58

Weight (kDa)

7.17

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 58 - 195 5.2e-25 FAD binding domain
Cytokin-bind PF09265 227 - 501 4.8e-109 Cytokinin dehydrogenase 1, FAD and cytokinin binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013975)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19500 AT4G29740 AT4G29740 AT4G29740
fragaria_vesca FvH4_1g07610
malus_domestica MD02G1080700.v1.1 MD15G1208200.v1.1
prunus_persica Prupe.7G208500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0093481
rosa_laevigata RLG00000016410
rosa_multiflora Rmu_sc0004086.1_g000001
rosa_roxburghii Rroxscaffold_2G00148050
rosa_samantha Rh2AG083100 Rh2BG083800 Rh2CG085800 Rh2DG081900
rosa_wichuraiana Rw2G006430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 647
AccI GTMKAC 1 cut(s) 777
AccII CGCG 1 cut(s) 586
AciI CCGC 9 cut(s) 129, 174, 198, 228, 257, 306, 377, 416, 1290
AclI AACGTT 2 cut(s) 476, 745
AclWI GGATC 5 cut(s) 107, 914, 1311, 1432, 1460
AcoI YGGCCR 3 cut(s) 265, 286, 378
AcuI CTGAAG 1 cut(s) 825
AdeI CACNNNGTG 1 cut(s) 1006
AfaI GTAC 3 cut(s) 244, 365, 1035
AfiI CCNNNNNNNGG 3 cut(s) 256, 295, 544
AflII CTTAAG 2 cut(s) 404, 1160
AflIII ACRYGT 2 cut(s) 326, 1036
AgsI TTSAA 4 cut(s) 351, 542, 899, 1027
AhlI ACTAGT 1 cut(s) 1394
AjiI CACGTC 4 cut(s) 327, 340, 373, 1006
AjnI CCWGG 1 cut(s) 1486
AleI CACNNNNGTG 1 cut(s) 338
AluBI AGCT 2 cut(s) 592, 1175
AluI AGCT 2 cut(s) 592, 1175
Alw26I GTCTC 2 cut(s) 218, 304
AlwI GGATC 5 cut(s) 107, 914, 1311, 1432, 1460
Ama87I CYCGRG 1 cut(s) 983
AoxI GGCC 6 cut(s) 265, 271, 286, 378, 687, 1008
ApeKI GCWGC 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 436, 468
AspS9I GGNCC 4 cut(s) 518, 670, 687, 736
AsuC2I CCSGG 4 cut(s) 171, 382, 984, 985
AsuHPI GGTGA 3 cut(s) 40, 91, 578
AsuII TTCGAA 2 cut(s) 511, 1445
AvaI CYCGRG 1 cut(s) 983
AvaII GGWCC 3 cut(s) 518, 670, 736
BalI TGGCCA 1 cut(s) 267
BauI CACGAG 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 416
BbvI GCAGC 1 cut(s) 143
BccI CCATC 2 cut(s) 128, 941
BceAI ACGGC 2 cut(s) 301, 429
BciT130I CCWGG 1 cut(s) 1488
BclI TGATCA 2 cut(s) 21, 45
BcnI CCSGG 4 cut(s) 171, 382, 984, 985
BcoDI GTCTC 2 cut(s) 218, 304
BcuI ACTAGT 1 cut(s) 1394
BfaI CTAG 2 cut(s) 866, 1395
BfmI CTRYAG 1 cut(s) 709
BfrI CTTAAG 2 cut(s) 404, 1160
BglII AGATCT 2 cut(s) 1058, 1456
BisI GCNGC 5 cut(s) 132, 175, 228, 258, 378
BlsI GCNGC 5 cut(s) 133, 176, 229, 259, 379
Bme1390I CCNGG 5 cut(s) 171, 382, 984, 985, 1488
Bme18I GGWCC 3 cut(s) 518, 670, 736
BmeT110I CYCGRG 1 cut(s) 983
BmgBI CACGTC 4 cut(s) 327, 340, 373, 1006
BmgT120I GGNCC 4 cut(s) 518, 670, 687, 736
BmrFI CCNGG 5 cut(s) 171, 382, 984, 985, 1488
BmrI ACTGGG 1 cut(s) 567
BmsI GCATC 1 cut(s) 693
BmuI ACTGGG 1 cut(s) 567
BpiI GAAGAC 1 cut(s) 416
BpmI CTGGAG 1 cut(s) 1470
Bpu14I TTCGAA 2 cut(s) 511, 1445
BpuMI CCSGG 4 cut(s) 171, 382, 984, 985
Bsa29I ATCGAT 1 cut(s) 1251
BsaBI GATNNNNATC 1 cut(s) 924
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 6 cut(s) 169, 268, 294, 983, 1088, 1487
BsaWI WCCGGW 1 cut(s) 1206
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 295, 544
Bse118I RCCGGY 1 cut(s) 433
Bse1I ACTGG 1 cut(s) 562
Bse8I GATNNNNATC 1 cut(s) 924
BseBI CCWGG 1 cut(s) 1488
BseCI ATCGAT 1 cut(s) 1251
BseDI CCNNGG 6 cut(s) 169, 268, 294, 983, 1088, 1487
BseGI GGATG 4 cut(s) 403, 708, 1084, 1441
BseJI GATNNNNATC 1 cut(s) 924
BseLI CCNNNNNNNGG 3 cut(s) 256, 295, 544
BseMII CTCAG 1 cut(s) 1069
BseNI ACTGG 1 cut(s) 562
BseRI GAGGAG 2 cut(s) 181, 206
BseX3I CGGCCG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 143
Bsh1236I CGCG 1 cut(s) 586
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 6 cut(s) 267, 273, 288, 380, 689, 1010
BshVI ATCGAT 1 cut(s) 1251
BsiEI CGRYCG 1 cut(s) 381
BsiHKCI CYCGRG 1 cut(s) 983
BsiSI CCGG 6 cut(s) 171, 303, 381, 434, 984, 1207
BslFI GGGAC 3 cut(s) 397, 1194, 1232
BslI CCNNNNNNNGG 3 cut(s) 256, 295, 544
BsmAI GTCTC 2 cut(s) 218, 304
BsmBI CGTCTC 1 cut(s) 218
BsmFI GGGAC 3 cut(s) 397, 1194, 1232
BsnI GGCC 6 cut(s) 267, 273, 288, 380, 689, 1010
Bso31I GGTCTC 1 cut(s) 304
BsoBI CYCGRG 1 cut(s) 983
Bsp119I TTCGAA 2 cut(s) 511, 1445
Bsp1407I TGTACA 1 cut(s) 1033
Bsp68I TCGCGA 1 cut(s) 586
BspACI CCGC 9 cut(s) 129, 174, 198, 228, 257, 306, 377, 416, 1290
BspANI GGCC 6 cut(s) 267, 273, 288, 380, 689, 1010
BspCNI CTCAG 1 cut(s) 1068
BspDI ATCGAT 1 cut(s) 1251
BspFNI CGCG 1 cut(s) 586
BspHI TCATGA 1 cut(s) 139
BspPI GGATC 5 cut(s) 107, 914, 1311, 1432, 1460
BspQI GCTCTTC 1 cut(s) 1194
BspT104I TTCGAA 2 cut(s) 511, 1445
BspTI CTTAAG 2 cut(s) 404, 1160
BspTNI GGTCTC 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 433
BsrGI TGTACA 1 cut(s) 1033
BsrI ACTGG 1 cut(s) 562
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 6 cut(s) 169, 268, 294, 983, 1088, 1487
BssSI CACGAG 1 cut(s) 261
BssT1I CCWWGG 2 cut(s) 268, 1088
Bst2BI CACGAG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 1488
Bst6I CTCTTC 2 cut(s) 1194, 1442
BstAFI CTTAAG 2 cut(s) 404, 1160
BstAUI TGTACA 1 cut(s) 1033
BstBI TTCGAA 2 cut(s) 511, 1445
BstC8I GCNNGC 1 cut(s) 584
BstDEI CTNAG 1 cut(s) 1055
BstF5I GGATG 4 cut(s) 403, 708, 1084, 1441
BstFNI CGCG 1 cut(s) 586
BstMAI GTCTC 2 cut(s) 218, 304
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 2 cut(s) 183, 374
BstNI CCWGG 1 cut(s) 1488
BstNSI RCATGY 2 cut(s) 582, 1040
BstSCI CCNGG 5 cut(s) 169, 380, 982, 983, 1486
BstSFI CTRYAG 1 cut(s) 709
BstUI CGCG 1 cut(s) 586
BstV1I GCAGC 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 416
BstX2I RGATCY 3 cut(s) 1058, 1303, 1456
BstYI RGATCY 3 cut(s) 1058, 1303, 1456
BstZI CGGCCG 1 cut(s) 378
Bsu15I ATCGAT 1 cut(s) 1251
BsuRI GGCC 6 cut(s) 267, 273, 288, 380, 689, 1010
BsuTUI ATCGAT 1 cut(s) 1251
BtgZI GCGATG 1 cut(s) 1250
BtrI CACGTC 4 cut(s) 327, 340, 373, 1006
BtsCI GGATG 4 cut(s) 403, 708, 1084, 1441
BtsIMutI CAGTG 2 cut(s) 333, 718
BtuMI TCGCGA 1 cut(s) 586
Cac8I GCNNGC 1 cut(s) 584
CciI TCATGA 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 4 cut(s) 518, 670, 687, 736
Cfr9I CCCGGG 1 cut(s) 983
ClaI ATCGAT 1 cut(s) 1251
Csp6I GTAC 3 cut(s) 243, 364, 1034
CviAII CATG 5 cut(s) 140, 322, 579, 674, 1037
CviQI GTAC 3 cut(s) 243, 364, 1034
DdeI CTNAG 1 cut(s) 1055
DraIII CACNNNGTG 1 cut(s) 1006
EaeI YGGCCR 3 cut(s) 265, 286, 378
EagI CGGCCG 1 cut(s) 378
Eam1104I CTCTTC 2 cut(s) 1194, 1442
EarI CTCTTC 2 cut(s) 1194, 1442
EciI GGCGGA 2 cut(s) 321, 431
EclXI CGGCCG 1 cut(s) 378
Eco130I CCWWGG 2 cut(s) 268, 1088
Eco31I GGTCTC 1 cut(s) 304
Eco32I GATATC 2 cut(s) 205, 753
Eco47I GGWCC 3 cut(s) 518, 670, 736
Eco52I CGGCCG 1 cut(s) 378
Eco57I CTGAAG 1 cut(s) 825
Eco88I CYCGRG 1 cut(s) 983
EcoRII CCWGG 1 cut(s) 1486
EcoRV GATATC 2 cut(s) 205, 753
EcoT14I CCWWGG 2 cut(s) 268, 1088
EcoT22I ATGCAT 1 cut(s) 1389
ErhI CCWWGG 2 cut(s) 268, 1088
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 5 cut(s) 143, 325, 582, 677, 1040
FalI AAGNNNNNCTT 2 cut(s) 1140, 1172
FaqI GGGAC 3 cut(s) 397, 1194, 1232
FatI CATG 5 cut(s) 139, 321, 578, 673, 1036
FbaI TGATCA 2 cut(s) 21, 45
FblI GTMKAC 1 cut(s) 777
Fnu4HI GCNGC 5 cut(s) 132, 175, 228, 258, 378
FokI GGATG 4 cut(s) 410, 715, 1071, 1448
Fsp4HI GCNGC 5 cut(s) 132, 175, 228, 258, 378
FspBI CTAG 2 cut(s) 866, 1395
GluI GCNGC 5 cut(s) 132, 175, 228, 258, 378
GsuI CTGGAG 1 cut(s) 1470
HaeIII GGCC 6 cut(s) 267, 273, 288, 380, 689, 1010
HapII CCGG 6 cut(s) 171, 303, 381, 434, 984, 1207
Hin1II CATG 5 cut(s) 143, 325, 582, 677, 1040
HincII GTYRAC 5 cut(s) 319, 576, 778, 820, 1327
HindII GTYRAC 5 cut(s) 319, 576, 778, 820, 1327
HinfI GANTC 4 cut(s) 774, 1120, 1182, 1355
HpaI GTTAAC 1 cut(s) 1327
HpaII CCGG 6 cut(s) 171, 303, 381, 434, 984, 1207
HphI GGTGA 3 cut(s) 40, 91, 578
Hpy166II GTNNAC 6 cut(s) 319, 576, 778, 820, 1034, 1327
Hpy188I TCNGA 7 cut(s) 149, 470, 702, 844, 1058, 1119, 1277
Hpy188III TCNNGA 7 cut(s) 140, 585, 896, 1024, 1124, 1179, 1310
Hpy8I GTNNAC 6 cut(s) 319, 576, 778, 820, 1034, 1327
Hpy99I CGWCG 2 cut(s) 470, 1007
HpyAV CCTTC 3 cut(s) 126, 782, 849
HpyCH4V TGCA 5 cut(s) 457, 677, 1000, 1350, 1387
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 374
HpyF3I CTNAG 1 cut(s) 1055
Hsp92II CATG 5 cut(s) 143, 325, 582, 677, 1040
Ksp22I TGATCA 2 cut(s) 21, 45
KspAI GTTAAC 1 cut(s) 1327
LguI GCTCTTC 1 cut(s) 1194
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 693
MaeI CTAG 2 cut(s) 866, 1395
MaeIII GTNAC 3 cut(s) 163, 530, 974
MboII GAAGA 9 cut(s) 421, 1055, 1148, 1181, 1268, 1298, 1345, 1415, 1459
MflI RGATCY 3 cut(s) 1058, 1303, 1456
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 8 cut(s) 72, 492, 542, 602, 635, 642, 660, 1338
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 2 cut(s) 783, 1176
MmeI TCCRAC 2 cut(s) 448, 1223
Mox20I TGGCCA 1 cut(s) 267
Mph1103I ATGCAT 1 cut(s) 1389
MscI TGGCCA 1 cut(s) 267
MslI CAYNNNNRTG 3 cut(s) 338, 995, 1137
Msp20I TGGCCA 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 200
MspCI CTTAAG 2 cut(s) 404, 1160
MspI CCGG 6 cut(s) 171, 303, 381, 434, 984, 1207
MspR9I CCNGG 5 cut(s) 171, 382, 984, 985, 1488
MvaI CCWGG 1 cut(s) 1488
MvnI CGCG 1 cut(s) 586
MwoI GCNNNNNNNGC 2 cut(s) 183, 374
NciI CCSGG 4 cut(s) 171, 382, 984, 985
NlaIII CATG 5 cut(s) 143, 325, 582, 677, 1040
NmuCI GTSAC 1 cut(s) 163
NruI TCGCGA 1 cut(s) 586
NsiI ATGCAT 1 cut(s) 1389
NspI RCATGY 2 cut(s) 582, 1040
NspV TTCGAA 2 cut(s) 511, 1445
OliI CACNNNNGTG 1 cut(s) 338
PagI TCATGA 1 cut(s) 139
PciI ACATGT 1 cut(s) 1036
PciSI GCTCTTC 1 cut(s) 1194
PfeI GAWTC 2 cut(s) 1120, 1355
PkrI GCNGC 5 cut(s) 133, 176, 229, 259, 379
PleI GAGTC 2 cut(s) 782, 1176
PpsI GAGTC 2 cut(s) 782, 1176
PscI ACATGT 1 cut(s) 1036
PsiI TTATAA 1 cut(s) 647
Psp1406I AACGTT 2 cut(s) 476, 745
Psp6I CCWGG 1 cut(s) 1486
PspGI CCWGG 1 cut(s) 1486
PspPI GGNCC 4 cut(s) 518, 670, 687, 736
PsuI RGATCY 3 cut(s) 1058, 1303, 1456
RruI TCGCGA 1 cut(s) 586
RsaI GTAC 3 cut(s) 244, 365, 1035
RsaNI GTAC 3 cut(s) 243, 364, 1034
RseI CAYNNNNRTG 3 cut(s) 338, 995, 1137
SalI GTCGAC 1 cut(s) 776
SapI GCTCTTC 1 cut(s) 1194
SatI GCNGC 5 cut(s) 132, 175, 228, 258, 378
Sau96I GGNCC 4 cut(s) 518, 670, 687, 736
SchI GAGTC 2 cut(s) 783, 1176
ScrFI CCNGG 5 cut(s) 171, 382, 984, 985, 1488
SfaNI GCATC 1 cut(s) 693
SfcI CTRYAG 1 cut(s) 709
SfuI TTCGAA 2 cut(s) 511, 1445
SinI GGWCC 3 cut(s) 518, 670, 736
SmaI CCCGGG 1 cut(s) 985
SmiMI CAYNNNNRTG 3 cut(s) 338, 995, 1137
SmlI CTYRAG 2 cut(s) 404, 1160
SmoI CTYRAG 2 cut(s) 404, 1160
SpeI ACTAGT 1 cut(s) 1394
Sse9I AATT 8 cut(s) 72, 492, 542, 602, 635, 642, 660, 1338
SsiI CCGC 9 cut(s) 129, 174, 198, 228, 257, 306, 377, 416, 1290
SspI AATATT 1 cut(s) 798
SspMI CTAG 2 cut(s) 866, 1395
StyD4I CCNGG 5 cut(s) 169, 380, 982, 983, 1486
StyI CCWWGG 2 cut(s) 268, 1088
TaqI TCGA 8 cut(s) 482, 511, 777, 1017, 1041, 1125, 1251, 1445
TaqII GACCGA 1 cut(s) 286
TasI AATT 8 cut(s) 72, 492, 542, 602, 635, 642, 660, 1338
TatI WGTACW 2 cut(s) 242, 1033
TauI GCSGC 4 cut(s) 177, 230, 260, 380
TfiI GAWTC 2 cut(s) 1120, 1355
TscAI CASTG 2 cut(s) 340, 718
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 3 cut(s) 979, 1121, 1269
TspGWI ACGGA 2 cut(s) 249, 461
TspMI CCCGGG 1 cut(s) 983
TspRI CASTG 2 cut(s) 340, 718
Vha464I CTTAAG 2 cut(s) 404, 1160
VpaK11BI GGWCC 3 cut(s) 518, 670, 736
XceI RCATGY 2 cut(s) 582, 1040
XcmI CCANNNNNNNNNTGG 1 cut(s) 664
XmaI CCCGGG 1 cut(s) 983
XmiI GTMKAC 1 cut(s) 777
XspI CTAG 2 cut(s) 866, 1395
Zsp2I ATGCAT 1 cut(s) 1389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.