AT4G29740

cytokinin dehydrogenase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
14566183 .. 14569380
3198 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29740.2

Sequence Viewer

Length: 1287 bp
ATGACTAATACTCTCTGTTTAAGCCTCATCACCCTAATAACGCTTTTTATAAGTTTAACCCCAACCTTAATCAAATCAGATGAGGGCATTGATGTTTTCTTACCCATATCACTCAACCTTACGGTCCTAACCGATCCCTTCTCCATCTCTGCCGCTTCTCACGACTTCGGTAACATAACCGACGAAAATCCCGGCGCCGTCCTCTGCCCTTCCTCCACCACGGAGGTGGCTCGTCTCCTCCGTTTCGCTAACGGAGGATTCTCTTACAATAAAGGCTCAACCAGCCCCGCGTCTACTTTCAAAGTGGCTGCTCGAGGCCAAGGCCACTCCCTCCGTGGCCAAGCCTCTGCACCCGGAGGTGTCGTCGTGAACATGACGTGTCTCGCCATGGCGGCTAAACCAGCGGCGGTTGTTATCTCGGCAGACGGGACTTACGCTGACGTGGCTGCCGGGACGATGTGGGTGGATGTTCTGAAGGCGGCGGTGGATAGAGGCGTCTCGCCGGTTACATGGACGGATTATTTGTATCTCAGCGTCGGCGGGACGTTGTCGAACGCTGGAATCGGTGGTCAGACGTTTAGACACGGCCCTCAGATTAGTAACGTTCATGAGCTTGACGTTATTACCGGAAAAGGTGAAATGATGACTTGCTCTCCAAAGTTAAACCCTGAATTGTTCTATGGAGTTTTAGGAGGTTTGGGTCAATTCGGTATTATAACGAGGGCCAGGATTGCGTTGGATCATGCACCCACAAGGGTGAAATGGTCTCGCATACTCTACAGTGACTTCTCGGCTTTTAAAAGAGACCAAGAGCGTTTAATATCAATGACCAATGATCTCGGAGTTGACTTTTTGGAAGGTCAACTTATGATGTCAAATGGCTTCGTAGACACCTCTTTCTTCCCACTCTCCGATCAAACAAGAGTCGCATCTCTTGTGAATGACCACCGGATCATCTATGTTCTCGAAGTAGCCAAGTATTATGACAGAACCACCCTTCCCATTATTGACCAGGTGATTGACACGTTAAGTAGAACTCTAGGTTTCGCTCCAGGGTTTATGTTCGTACAAGATGTTCCGTATTTCGATTTCTTGAACCGTGTCCGAAACGAAGAAGATAAACTCAGATCTTTAGGACTATGGGAAGTTCCTCATCCATGGCTTAACATCTTTGTCCCGGGGTCTCGAATCCAAGATTTTCATGATGGTGTTATTAATGGCCTTCTTCTAAACCAAACCTCAACTTCTGGTGTTACTCTCTTCTATCCCACAAACCGAAACAAGTAA

Protein Analysis

428

Amino Acids

46.61

Weight (kDa)

5.76

Isoelectric Point (pI)

27.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 64 - 218 4.2e-17 FAD binding domain
Cytokin-bind PF09265 250 - 523 7.5e-109 Cytokinin dehydrogenase 1, FAD and cytokinin binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013975)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 50, 716
AccB1I GGYRCC 1 cut(s) 194
AccI GTMKAC 2 cut(s) 293, 888
AccII CGCG 1 cut(s) 290
AciI CCGC 8 cut(s) 153, 288, 392, 404, 407, 479, 482, 540
AclI AACGTT 1 cut(s) 603
AclWI GGATC 3 cut(s) 128, 747, 959
AcoI YGGCCR 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 494
AcyI GRCGYC 2 cut(s) 195, 495
AfaI GTAC 1 cut(s) 1068
AflIII ACRYGT 2 cut(s) 377, 1023
AgsI TTSAA 2 cut(s) 301, 1096
AjiI CACGTC 2 cut(s) 378, 442
AjnI CCWGG 3 cut(s) 725, 1011, 1051
AleI CACNNNNGTG 2 cut(s) 224, 755
AloI GAACNNNNNNTCC 2 cut(s) 982, 1014
AluBI AGCT 1 cut(s) 613
AluI AGCT 1 cut(s) 613
Alw26I GTCTC 6 cut(s) 239, 386, 502, 771, 798, 1188
AlwI GGATC 3 cut(s) 128, 747, 959
Ama87I CYCGRG 2 cut(s) 312, 1177
AoxI GGCC 6 cut(s) 316, 322, 337, 586, 723, 1219
ApeKI GCWGC 2 cut(s) 308, 446
ArsI GACNNNNNNTTYG 2 cut(s) 505, 537
AseI ATTAAT 1 cut(s) 1215
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 3 cut(s) 124, 587, 723
AsuC2I CCSGG 5 cut(s) 192, 354, 451, 1178, 1179
AsuHPI GGTGA 4 cut(s) 22, 647, 769, 1027
AvaI CYCGRG 2 cut(s) 312, 1177
AvaII GGWCC 1 cut(s) 124
BalI TGGCCA 1 cut(s) 339
BanI GGYRCC 1 cut(s) 194
BbvI GCAGC 2 cut(s) 295, 433
BccI CCATC 2 cut(s) 152, 1199
BceAI ACGGC 2 cut(s) 182, 601
BciT130I CCWGG 3 cut(s) 727, 1013, 1053
BcnI CCSGG 5 cut(s) 192, 354, 451, 1178, 1179
BcoDI GTCTC 6 cut(s) 239, 386, 502, 771, 798, 1188
BfaI CTAG 1 cut(s) 1040
BfmI CTRYAG 1 cut(s) 778
BfoI RGCGCY 1 cut(s) 198
BglI GCCNNNNNGGC 1 cut(s) 392
BglII AGATCT 1 cut(s) 1127
BisI GCNGC 6 cut(s) 153, 309, 393, 405, 447, 480
BlsI GCNGC 6 cut(s) 154, 310, 394, 406, 448, 481
Bme1390I CCNGG 8 cut(s) 192, 354, 451, 727, 1013, 1053, 1178, 1179
Bme18I GGWCC 1 cut(s) 124
BmeT110I CYCGRG 2 cut(s) 312, 1177
BmgBI CACGTC 2 cut(s) 378, 442
BmgT120I GGNCC 3 cut(s) 124, 587, 723
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 8 cut(s) 192, 354, 451, 727, 1013, 1053, 1178, 1179
BmsI GCATC 1 cut(s) 938
BpmI CTGGAG 1 cut(s) 1035
BpuMI CCSGG 5 cut(s) 192, 354, 451, 1178, 1179
BsaHI GRCGYC 2 cut(s) 195, 495
BsaI GGTCTC 3 cut(s) 771, 798, 1188
BsaJI CCNNGG 8 cut(s) 219, 319, 334, 387, 1052, 1157, 1177, 1178
BsaWI WCCGGW 2 cut(s) 626, 948
BsaXI ACNNNNNCTCC 4 cut(s) 348, 378, 637, 667
Bse118I RCCGGY 1 cut(s) 502
BseBI CCWGG 3 cut(s) 727, 1013, 1053
BseDI CCNNGG 8 cut(s) 219, 319, 334, 387, 1052, 1157, 1177, 1178
BseGI GGATG 2 cut(s) 472, 1153
BseMII CTCAG 3 cut(s) 544, 605, 1138
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 295, 433
BsgI GTGCAG 1 cut(s) 333
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 6 cut(s) 318, 324, 339, 588, 725, 1221
BshNI GGYRCC 1 cut(s) 194
BsiHKCI CYCGRG 2 cut(s) 312, 1177
BsiSI CCGG 7 cut(s) 192, 354, 450, 503, 627, 949, 1178
BslFI GGGAC 4 cut(s) 442, 466, 556, 1160
BsmAI GTCTC 6 cut(s) 239, 386, 502, 771, 798, 1188
BsmBI CGTCTC 2 cut(s) 239, 502
BsmFI GGGAC 4 cut(s) 442, 466, 556, 1160
BsnI GGCC 6 cut(s) 318, 324, 339, 588, 725, 1221
Bso31I GGTCTC 3 cut(s) 771, 798, 1188
BsoBI CYCGRG 2 cut(s) 312, 1177
Bsp143I GATC 6 cut(s) 133, 739, 835, 913, 951, 1127
Bsp19I CCATGG 2 cut(s) 387, 1157
BspACI CCGC 8 cut(s) 153, 288, 392, 404, 407, 479, 482, 540
BspANI GGCC 6 cut(s) 318, 324, 339, 588, 725, 1221
BspCNI CTCAG 3 cut(s) 543, 604, 1137
BspFNI CGCG 1 cut(s) 290
BspHI TCATGA 2 cut(s) 607, 1201
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 3 cut(s) 128, 747, 959
BspT107I GGYRCC 1 cut(s) 194
BspTNI GGTCTC 3 cut(s) 771, 798, 1188
BsrFI RCCGGY 1 cut(s) 502
BssAI RCCGGY 1 cut(s) 502
BssECI CCNNGG 8 cut(s) 219, 319, 334, 387, 1052, 1157, 1177, 1178
BssMI GATC 6 cut(s) 133, 739, 835, 913, 951, 1127
BssNI GRCGYC 2 cut(s) 195, 495
BssT1I CCWWGG 3 cut(s) 319, 387, 1157
Bst2UI CCWGG 3 cut(s) 727, 1013, 1053
Bst4CI ACNGT 3 cut(s) 124, 782, 1100
Bst6I CTCTTC 1 cut(s) 1265
BstACI GRCGYC 2 cut(s) 195, 495
BstDEI CTNAG 3 cut(s) 530, 591, 1124
BstDSI CCRYGG 4 cut(s) 219, 334, 387, 1157
BstF5I GGATG 2 cut(s) 472, 1153
BstFNI CGCG 1 cut(s) 290
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 6 cut(s) 136, 742, 838, 916, 954, 1130
BstMAI GTCTC 6 cut(s) 239, 386, 502, 771, 798, 1188
BstMBI GATC 6 cut(s) 133, 739, 835, 913, 951, 1127
BstMWI GCNNNNNNNGC 5 cut(s) 282, 392, 401, 443, 731
BstNI CCWGG 3 cut(s) 727, 1013, 1053
BstSCI CCNGG 8 cut(s) 190, 352, 449, 725, 1011, 1051, 1176, 1177
BstSFI CTRYAG 1 cut(s) 778
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 2 cut(s) 295, 433
BstX2I RGATCY 1 cut(s) 1127
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 1 cut(s) 1127
BsuRI GGCC 6 cut(s) 318, 324, 339, 588, 725, 1221
BtgI CCRYGG 4 cut(s) 219, 334, 387, 1157
BtrI CACGTC 2 cut(s) 378, 442
BtsCI GGATG 2 cut(s) 472, 1153
BtsIMutI CAGTG 1 cut(s) 787
CciI TCATGA 2 cut(s) 607, 1201
CfoI GCGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 502
Cfr13I GGNCC 3 cut(s) 124, 587, 723
Cfr9I CCCGGG 1 cut(s) 1177
CseI GACGC 3 cut(s) 279, 484, 523
CsiI ACCWGGT 1 cut(s) 1011
Csp6I GTAC 1 cut(s) 1067
CviAII CATG 7 cut(s) 373, 388, 510, 608, 743, 1158, 1202
CviQI GTAC 1 cut(s) 1067
DdeI CTNAG 3 cut(s) 530, 591, 1124
DinI GGCGCC 1 cut(s) 196
DpnI GATC 6 cut(s) 135, 741, 837, 915, 953, 1129
DpnII GATC 6 cut(s) 133, 739, 835, 913, 951, 1127
DraI TTTAAA 1 cut(s) 799
EaeI YGGCCR 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 1265
EarI CTCTTC 1 cut(s) 1265
Eco130I CCWWGG 3 cut(s) 319, 387, 1157
Eco31I GGTCTC 3 cut(s) 771, 798, 1188
Eco47I GGWCC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 494
Eco88I CYCGRG 2 cut(s) 312, 1177
EcoRII CCWGG 3 cut(s) 725, 1011, 1051
EcoT14I CCWWGG 3 cut(s) 319, 387, 1157
EgeI GGCGCC 1 cut(s) 196
EheI GGCGCC 1 cut(s) 196
ErhI CCWWGG 3 cut(s) 319, 387, 1157
Esp3I CGTCTC 2 cut(s) 239, 502
FaeI CATG 7 cut(s) 376, 391, 513, 611, 746, 1161, 1205
FalI AAGNNNNNCTT 2 cut(s) 849, 881
FaqI GGGAC 4 cut(s) 442, 466, 556, 1160
FatI CATG 7 cut(s) 372, 387, 509, 607, 742, 1157, 1201
FauI CCCGC 2 cut(s) 295, 533
FblI GTMKAC 2 cut(s) 293, 888
Fnu4HI GCNGC 6 cut(s) 153, 309, 393, 405, 447, 480
FokI GGATG 2 cut(s) 479, 1140
Fsp4HI GCNGC 6 cut(s) 153, 309, 393, 405, 447, 480
FspBI CTAG 1 cut(s) 1040
GlaI GCGC 1 cut(s) 196
GluI GCNGC 6 cut(s) 153, 309, 393, 405, 447, 480
GsuI CTGGAG 1 cut(s) 1035
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 6 cut(s) 318, 324, 339, 588, 725, 1221
HapII CCGG 7 cut(s) 192, 354, 450, 503, 627, 949, 1178
HgaI GACGC 3 cut(s) 279, 484, 523
HhaI GCGC 1 cut(s) 197
Hin1I GRCGYC 2 cut(s) 195, 495
Hin1II CATG 7 cut(s) 376, 391, 513, 611, 746, 1161, 1205
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 2 cut(s) 847, 863
HindII GTYRAC 2 cut(s) 847, 863
HinfI GANTC 4 cut(s) 258, 561, 924, 1188
HpaII CCGG 7 cut(s) 192, 354, 450, 503, 627, 949, 1178
HphI GGTGA 4 cut(s) 22, 647, 769, 1027
Hpy166II GTNNAC 5 cut(s) 294, 370, 847, 863, 889
Hpy188I TCNGA 8 cut(s) 79, 474, 573, 594, 842, 913, 1106, 1127
Hpy188III TCNNGA 7 cut(s) 161, 367, 608, 965, 1093, 1185, 1202
Hpy8I GTNNAC 5 cut(s) 294, 370, 847, 863, 889
Hpy99I CGWCG 3 cut(s) 185, 368, 539
HpyAV CCTTC 6 cut(s) 148, 219, 469, 851, 1007, 1232
HpyCH4III ACNGT 3 cut(s) 124, 782, 1100
HpyCH4IV ACGT 7 cut(s) 377, 441, 545, 575, 603, 618, 1025
HpyCH4V TGCA 2 cut(s) 350, 746
HpyF10VI GCNNNNNNNGC 5 cut(s) 282, 392, 401, 443, 731
HpyF3I CTNAG 3 cut(s) 530, 591, 1124
HpySE526I ACGT 7 cut(s) 377, 441, 545, 575, 603, 618, 1025
Hsp92I GRCGYC 2 cut(s) 195, 495
Hsp92II CATG 7 cut(s) 376, 391, 513, 611, 746, 1161, 1205
HspAI GCGC 1 cut(s) 195
KasI GGCGCC 1 cut(s) 194
Kzo9I GATC 6 cut(s) 133, 739, 835, 913, 951, 1127
LmnI GCTCC 1 cut(s) 1054
Lsp1109I GCAGC 2 cut(s) 295, 433
LweI GCATC 1 cut(s) 938
MabI ACCWGGT 1 cut(s) 1011
MaeI CTAG 1 cut(s) 1040
MaeII ACGT 7 cut(s) 377, 441, 545, 575, 603, 618, 1025
MaeIII GTNAC 5 cut(s) 170, 505, 599, 782, 1252
MalI GATC 6 cut(s) 135, 741, 837, 915, 953, 1129
MboI GATC 6 cut(s) 133, 739, 835, 913, 951, 1127
MboII GAAGA 5 cut(s) 892, 1124, 1127, 1217, 1252
MflI RGATCY 1 cut(s) 1127
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 2 cut(s) 671, 704
MluNI TGGCCA 1 cut(s) 339
Mly113I GGCGCC 1 cut(s) 195
MlyI GAGTC 1 cut(s) 933
MmeI TCCRAC 1 cut(s) 717
Mox20I TGGCCA 1 cut(s) 339
MscI TGGCCA 1 cut(s) 339
MseI TTAA 9 cut(s) 20, 56, 68, 662, 798, 818, 1028, 1164, 1215
MslI CAYNNNNRTG 3 cut(s) 224, 755, 1206
Msp20I TGGCCA 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 7 cut(s) 192, 354, 450, 503, 627, 949, 1178
MspR9I CCNGG 8 cut(s) 192, 354, 451, 727, 1013, 1053, 1178, 1179
MvaI CCWGG 3 cut(s) 727, 1013, 1053
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 5 cut(s) 282, 392, 401, 443, 731
NarI GGCGCC 1 cut(s) 195
NciI CCSGG 5 cut(s) 192, 354, 451, 1178, 1179
NcoI CCATGG 2 cut(s) 387, 1157
NdeII GATC 6 cut(s) 133, 739, 835, 913, 951, 1127
NlaIII CATG 7 cut(s) 376, 391, 513, 611, 746, 1161, 1205
NlaIV GGNNCC 1 cut(s) 196
NmeAIII GCCGAG 2 cut(s) 398, 770
NmuCI GTSAC 1 cut(s) 782
OliI CACNNNNGTG 2 cut(s) 224, 755
PaeR7I CTCGAG 1 cut(s) 312
PagI TCATGA 2 cut(s) 607, 1201
PcsI WCGNNNNNNNCGW 1 cut(s) 238
PfeI GAWTC 3 cut(s) 258, 561, 1188
PflFI GACNNNGTC 1 cut(s) 547
PkrI GCNGC 6 cut(s) 154, 310, 394, 406, 448, 481
PleI GAGTC 1 cut(s) 932
PluTI GGCGCC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 932
PshBI ATTAAT 1 cut(s) 1215
PsiI TTATAA 2 cut(s) 50, 716
Psp1406I AACGTT 1 cut(s) 603
Psp6I CCWGG 3 cut(s) 725, 1011, 1051
PspGI CCWGG 3 cut(s) 725, 1011, 1051
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 3 cut(s) 124, 587, 723
PspXI VCTCGAGB 1 cut(s) 312
PsrI GAACNNNNNNTAC 2 cut(s) 1059, 1091
PsuI RGATCY 1 cut(s) 1127
PsyI GACNNNGTC 1 cut(s) 547
RsaI GTAC 1 cut(s) 1068
RsaNI GTAC 1 cut(s) 1067
RseI CAYNNNNRTG 3 cut(s) 224, 755, 1206
SaqAI TTAA 9 cut(s) 20, 56, 68, 662, 798, 818, 1028, 1164, 1215
SatI GCNGC 6 cut(s) 153, 309, 393, 405, 447, 480
Sau3AI GATC 6 cut(s) 133, 739, 835, 913, 951, 1127
Sau96I GGNCC 3 cut(s) 124, 587, 723
SchI GAGTC 1 cut(s) 933
ScrFI CCNGG 8 cut(s) 192, 354, 451, 727, 1013, 1053, 1178, 1179
SexAI ACCWGGT 1 cut(s) 1011
SfaNI GCATC 1 cut(s) 938
SfcI CTRYAG 1 cut(s) 778
SfoI GGCGCC 1 cut(s) 196
Sfr274I CTCGAG 1 cut(s) 312
SinI GGWCC 1 cut(s) 124
SlaI CTCGAG 1 cut(s) 312
SmaI CCCGGG 1 cut(s) 1179
SmiMI CAYNNNNRTG 3 cut(s) 224, 755, 1206
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
Sse9I AATT 2 cut(s) 671, 704
SsiI CCGC 8 cut(s) 153, 288, 392, 404, 407, 479, 482, 540
SspDI GGCGCC 1 cut(s) 194
SspMI CTAG 1 cut(s) 1040
StyD4I CCNGG 8 cut(s) 190, 352, 449, 725, 1011, 1051, 1176, 1177
StyI CCWWGG 3 cut(s) 319, 387, 1157
TaaI ACNGT 3 cut(s) 124, 782, 1100
TaiI ACGT 7 cut(s) 380, 444, 548, 578, 606, 621, 1028
TaqI TCGA 5 cut(s) 313, 551, 966, 1086, 1186
TasI AATT 2 cut(s) 671, 704
TauI GCSGC 4 cut(s) 155, 395, 407, 482
TfiI GAWTC 3 cut(s) 258, 561, 1188
Tru1I TTAA 9 cut(s) 20, 56, 68, 662, 798, 818, 1028, 1164, 1215
Tru9I TTAA 9 cut(s) 20, 56, 68, 662, 798, 818, 1028, 1164, 1215
TscAI CASTG 1 cut(s) 787
TseFI GTSAC 1 cut(s) 782
TseI GCWGC 2 cut(s) 308, 446
Tsp45I GTSAC 1 cut(s) 782
TspDTI ATGAA 2 cut(s) 596, 1190
TspGWI ACGGA 6 cut(s) 230, 236, 267, 323, 530, 1068
TspMI CCCGGG 1 cut(s) 1177
TspRI CASTG 1 cut(s) 787
Tth111I GACNNNGTC 1 cut(s) 547
VpaK11BI GGWCC 1 cut(s) 124
VspI ATTAAT 1 cut(s) 1215
XcmI CCANNNNNNNNNTGG 3 cut(s) 223, 332, 733
XhoI CTCGAG 1 cut(s) 312
XmaI CCCGGG 1 cut(s) 1177
XmiI GTMKAC 2 cut(s) 293, 888
XspI CTAG 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.