AT2G20340

Tyrosine decarboxylase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
8779667 .. 8782789
3123 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20340.2

Sequence Viewer

Length: 1473 bp
ATGGAAAATGGAAGCGGGAAGGTGTTGAAGCCGATGGACTCAGAGCAATTGAGAGAGTACGGACATCTGATGGTTGATTTCATTGCTGATTACTACAAAACCATCGAAGATTTCCCTGTTCTTAGCCAAGTTCAGCCTGGTTATCTTCATAAGCTTTTGCCTGATTCTGCACCTGACCACCCTGAAACTCTGGACCAAGTTCTTGATGATGTTCGAGCAAAGATATTGCCTGGAGTAACGCATTGGCAAAGCCCGAGTTTCTTTGCTTATTATCCTTCTAACAGCAGTGTTGCTGGGTTCTTGGGTGAGATGTTGAGTGCTGGTCTTGGCATTGTTGGTTTTAGTTGGGTTACTTCTCCAGCTGCCACAGAGCTAGAAATGATCGTTCTTGATTGGGTTGCTAAACTTCTCAACCTACCCGAGCAGTTTATGTCCAAAGGAAATGGAGGTGGAGTTATACAAGGGTCAGCTAGTGAAGCTGTTCTTGTTGTTCTGATTGCTGCACGCGACAAGGTTTTAAGAAGCGTTGGCAAAAACGCGCTTGAGAAGCTCGTTGTCTACTCCTCTGACCAGACTCATTCAGCTTTACAGAAGGCTTGCCAGATTGCTGGAATCCATCCAGAGAATTGCAGGGTGCTGACAACAGACTCTTCTACAAATTACGCTCTGCGTCCAGAATCGCTTCAAGAAGCTGTTTCTAGGGATCTTGAAGCTGGATTGATTCCATTCTTCTTATGTGCTAATGTTGGGACCACTTCTTCAACCGCAGTTGATCCATTAGCTGCACTGGGGAAGATTGCTAATAGCAATGGAATTTGGTTTCACGTGGATGCAGCATATGCTGGAAGTGCCTGTATATGTCCAGAGTATCGGCAATACATTGACGGTGTAGAAACTGCAGACTCTTTTAACATGAATGCTCACAAATGGTTCCTCACTAACTTCGATTGTTCCCTTCTTTGGGTAAAGGATCAAGATTCTCTTACATTAGCTCTTTCAACAAATCCAGAGTTTCTCAAAAACAAGGCCTCTCAGGCAAACTTGGTTGTTGATTACAAAGATTGGCAAATCCCTCTCGGACGAAGATTCAGATCATTGAAACTATGGATGGTTTTAAGGCTCTATGGATCTGAGACCTTGAAGAGCTATATAAGAAACCATATCAAACTGGCTAAAGAATTCGAACAACTTGTCTCTCAAGATCCTAACTTCGAGATTGTCACACCTCGGATCTTTGCTCTTGTCTGTTTCCGCCTCGTGCCTGTGAAAGACGAAGAAAAGAAGTGTAATAACCGAAACCGTGAACTCCTAGACGCAGTGAACTCTTCAGGGAAACTCTTCATGTCGCACACTGCTTTATCGGGGAAAATCGTACTACGTTGCGCAATAGGAGCGCCATTGACGGAGGAGAAGCACGTTAAGGAGGCGTGGAAGATTATTCAGGAAGAAGCATCTTACTTGCTTCACAAGTAA

Protein Analysis

490

Amino Acids

54.42

Weight (kDa)

5.89

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 46 - 295 1.7e-74 Pyridoxal-dependent decarboxylase conserved domain
Pyridoxal_deC PF00282 297 - 392 3.9e-23 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1384
AccI GTMKAC 1 cut(s) 558
AccII CGCG 2 cut(s) 507, 539
AciI CCGC 3 cut(s) 15, 765, 1252
AclWI GGATC 6 cut(s) 711, 767, 978, 1135, 1196, 1238
AcsI RAATTY 2 cut(s) 813, 1178
AcuI CTGAAG 1 cut(s) 1311
AcvI CACGTG 1 cut(s) 826
AfaI GTAC 2 cut(s) 59, 1374
AfiI CCNNNNNNNGG 2 cut(s) 960, 961
AgsI TTSAA 7 cut(s) 28, 686, 710, 762, 999, 1099, 1141
AjnI CCWGG 2 cut(s) 136, 229
Alw26I GTCTC 2 cut(s) 1127, 1198
AlwI GGATC 6 cut(s) 711, 767, 978, 1135, 1196, 1238
Ama87I CYCGRG 2 cut(s) 253, 419
AoxI GGCC 1 cut(s) 1026
ApeKI GCWGC 4 cut(s) 362, 500, 782, 833
ApoI RAATTY 2 cut(s) 813, 1178
ArsI GACNNNNNNTTYG 2 cut(s) 1176, 1208
Asp700I GAANNNNTTC 3 cut(s) 480, 681, 1337
AspLEI GCGC 3 cut(s) 541, 1385, 1396
AspS9I GGNCC 2 cut(s) 193, 750
AsuHPI GGTGA 1 cut(s) 317
AsuII TTCGAA 1 cut(s) 1182
AvaI CYCGRG 2 cut(s) 253, 419
AvaII GGWCC 2 cut(s) 193, 750
BauI CACGAG 1 cut(s) 1256
BbrPI CACGTG 1 cut(s) 826
BbvI GCAGC 4 cut(s) 349, 487, 769, 845
BccI CCATC 5 cut(s) 28, 64, 110, 624, 1102
BciT130I CCWGG 2 cut(s) 138, 231
BcoDI GTCTC 2 cut(s) 1127, 1198
BfaI CTAG 4 cut(s) 374, 471, 699, 1310
BfmI CTRYAG 1 cut(s) 897
BfoI RGCGCY 1 cut(s) 1397
BglI GCCNNNNNGGC 1 cut(s) 1034
BisI GCNGC 4 cut(s) 363, 501, 783, 834
BlsI GCNGC 4 cut(s) 364, 502, 784, 835
Bme1390I CCNGG 2 cut(s) 138, 231
Bme18I GGWCC 2 cut(s) 193, 750
BmeT110I CYCGRG 2 cut(s) 253, 419
BmgT120I GGNCC 2 cut(s) 193, 750
BmiI GGNNCC 2 cut(s) 751, 932
BmrFI CCNGG 2 cut(s) 138, 231
BmrI ACTGGG 1 cut(s) 797
BmsI GCATC 2 cut(s) 820, 1460
BmuI ACTGGG 1 cut(s) 797
BpmI CTGGAG 2 cut(s) 252, 342
Bpu14I TTCGAA 1 cut(s) 1182
BpuEI CTTGAG 2 cut(s) 563, 1182
BsaAI YACGTR 1 cut(s) 826
BsaBI GATNNNNATC 1 cut(s) 1090
BsaI GGTCTC 1 cut(s) 1127
BsaJI CCNNGG 1 cut(s) 1226
BsaXI ACNNNNNCTCC 2 cut(s) 438, 468
Bsc4I CCNNNNNNNGG 2 cut(s) 960, 961
Bse1I ACTGG 2 cut(s) 792, 1173
Bse3DI GCAATG 2 cut(s) 81, 814
Bse8I GATNNNNATC 1 cut(s) 1090
BseBI CCWGG 2 cut(s) 138, 231
BseDI CCNNGG 1 cut(s) 1226
BseGI GGATG 3 cut(s) 616, 835, 1113
BseJI GATNNNNATC 1 cut(s) 1090
BseLI CCNNNNNNNGG 2 cut(s) 960, 961
BseMI GCAATG 2 cut(s) 81, 814
BseMII CTCAG 3 cut(s) 54, 1046, 1122
BseNI ACTGG 2 cut(s) 792, 1173
BseRI GAGGAG 2 cut(s) 553, 1421
BseXI GCAGC 4 cut(s) 349, 487, 769, 845
BseYI CCCAGC 1 cut(s) 293
BsgI GTGCAG 3 cut(s) 153, 486, 768
Bsh1236I CGCG 2 cut(s) 507, 539
BshFI GGCC 1 cut(s) 1028
BsiHKCI CYCGRG 2 cut(s) 253, 419
BslFI GGGAC 1 cut(s) 763
BslI CCNNNNNNNGG 2 cut(s) 960, 961
BsmAI GTCTC 2 cut(s) 1127, 1198
BsmFI GGGAC 1 cut(s) 763
BsmI GAATGC 1 cut(s) 922
BsnI GGCC 1 cut(s) 1028
Bso31I GGTCTC 1 cut(s) 1127
BsoBI CYCGRG 2 cut(s) 253, 419
Bsp119I TTCGAA 1 cut(s) 1182
Bsp143I GATC 8 cut(s) 381, 703, 772, 970, 1091, 1127, 1201, 1230
BspACI CCGC 3 cut(s) 15, 765, 1252
BspANI GGCC 1 cut(s) 1028
BspCNI CTCAG 3 cut(s) 53, 1045, 1123
BspFNI CGCG 2 cut(s) 507, 539
BspLI GGNNCC 2 cut(s) 751, 932
BspMAI CTGCAG 1 cut(s) 901
BspPI GGATC 6 cut(s) 711, 767, 978, 1135, 1196, 1238
BspQI GCTCTTC 1 cut(s) 1136
BspT104I TTCGAA 1 cut(s) 1182
BspTNI GGTCTC 1 cut(s) 1127
BsrDI GCAATG 2 cut(s) 81, 814
BsrI ACTGG 2 cut(s) 792, 1173
BssECI CCNNGG 1 cut(s) 1226
BssMI GATC 8 cut(s) 381, 703, 772, 970, 1091, 1127, 1201, 1230
BssSI CACGAG 1 cut(s) 1256
Bst2BI CACGAG 1 cut(s) 1256
Bst2UI CCWGG 2 cut(s) 138, 231
Bst4CI ACNGT 2 cut(s) 887, 1301
Bst6I CTCTTC 4 cut(s) 655, 1136, 1330, 1343
BstAPI GCANNNNNTGC 1 cut(s) 839
BstBAI YACGTR 1 cut(s) 826
BstBI TTCGAA 1 cut(s) 1182
BstC8I GCNNGC 2 cut(s) 505, 598
BstDEI CTNAG 4 cut(s) 40, 122, 1032, 1131
BstF5I GGATG 3 cut(s) 616, 835, 1113
BstFNI CGCG 2 cut(s) 507, 539
BstH2I RGCGCY 1 cut(s) 1397
BstHHI GCGC 3 cut(s) 541, 1385, 1396
BstKTI GATC 8 cut(s) 384, 706, 775, 973, 1094, 1130, 1204, 1233
BstMAI GTCTC 2 cut(s) 1127, 1198
BstMBI GATC 8 cut(s) 381, 703, 772, 970, 1091, 1127, 1201, 1230
BstMWI GCNNNNNNNGC 6 cut(s) 476, 547, 839, 848, 1034, 1391
BstNI CCWGG 2 cut(s) 138, 231
BstSCI CCNGG 2 cut(s) 136, 229
BstSFI CTRYAG 1 cut(s) 897
BstUI CGCG 2 cut(s) 507, 539
BstV1I GCAGC 4 cut(s) 349, 487, 769, 845
BstX2I RGATCY 4 cut(s) 703, 1127, 1201, 1230
BstXI CCANNNNNNTGG 1 cut(s) 608
BstYI RGATCY 4 cut(s) 703, 1127, 1201, 1230
BsuRI GGCC 1 cut(s) 1028
BtsCI GGATG 3 cut(s) 616, 835, 1113
BtsI GCAGTG 3 cut(s) 292, 1323, 1350
BtsIMutI CAGTG 4 cut(s) 292, 785, 1323, 1350
Cac8I GCNNGC 2 cut(s) 505, 598
CfoI GCGC 3 cut(s) 541, 1385, 1396
Cfr13I GGNCC 2 cut(s) 193, 750
CseI GACGC 2 cut(s) 659, 1322
Csp6I GTAC 2 cut(s) 58, 1373
CviAII CATG 2 cut(s) 913, 1342
CviQI GTAC 2 cut(s) 58, 1373
DdeI CTNAG 4 cut(s) 40, 122, 1032, 1131
DpnI GATC 8 cut(s) 383, 705, 774, 972, 1093, 1129, 1203, 1232
DpnII GATC 8 cut(s) 381, 703, 772, 970, 1091, 1127, 1201, 1230
Eam1104I CTCTTC 4 cut(s) 655, 1136, 1330, 1343
EarI CTCTTC 4 cut(s) 655, 1136, 1330, 1343
EciI GGCGGA 1 cut(s) 1241
Eco147I AGGCCT 1 cut(s) 1028
Eco31I GGTCTC 1 cut(s) 1127
Eco47I GGWCC 2 cut(s) 193, 750
Eco57I CTGAAG 1 cut(s) 1311
Eco72I CACGTG 1 cut(s) 826
Eco88I CYCGRG 2 cut(s) 253, 419
EcoRI GAATTC 1 cut(s) 1178
EcoRII CCWGG 2 cut(s) 136, 229
FaeI CATG 2 cut(s) 916, 1345
FalI AAGNNNNNCTT 4 cut(s) 468, 500, 966, 998
FaqI GGGAC 1 cut(s) 763
FatI CATG 2 cut(s) 912, 1341
FauI CCCGC 1 cut(s) 8
FauNDI CATATG 1 cut(s) 838
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 4 cut(s) 363, 501, 783, 834
FokI GGATG 3 cut(s) 603, 842, 1120
Fsp4HI GCNGC 4 cut(s) 363, 501, 783, 834
FspBI CTAG 4 cut(s) 374, 471, 699, 1310
FspI TGCGCA 1 cut(s) 1384
GlaI GCGC 3 cut(s) 540, 1384, 1395
GluI GCNGC 4 cut(s) 363, 501, 783, 834
GsaI CCCAGC 1 cut(s) 297
GsuI CTGGAG 2 cut(s) 252, 342
HaeII RGCGCY 1 cut(s) 1397
HaeIII GGCC 1 cut(s) 1028
HgaI GACGC 2 cut(s) 659, 1322
HhaI GCGC 3 cut(s) 541, 1385, 1396
Hin1II CATG 2 cut(s) 916, 1345
Hin6I GCGC 3 cut(s) 539, 1383, 1394
HinP1I GCGC 3 cut(s) 539, 1383, 1394
HindIII AAGCTT 1 cut(s) 152
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 3 cut(s) 559, 1304, 1321
Hpy188I TCNGA 8 cut(s) 43, 69, 495, 568, 1079, 1091, 1132, 1230
Hpy8I GTNNAC 3 cut(s) 559, 1304, 1321
HpyAV CCTTC 4 cut(s) 13, 285, 586, 965
HpyCH4III ACNGT 2 cut(s) 887, 1301
HpyCH4IV ACGT 3 cut(s) 825, 1378, 1416
HpyCH4V TGCA 6 cut(s) 170, 503, 630, 785, 833, 899
HpyF10VI GCNNNNNNNGC 6 cut(s) 476, 547, 839, 848, 1034, 1391
HpyF3I CTNAG 4 cut(s) 40, 122, 1032, 1131
HpySE526I ACGT 3 cut(s) 825, 1378, 1416
Hsp92II CATG 2 cut(s) 916, 1345
HspAI GCGC 3 cut(s) 539, 1383, 1394
Kzo9I GATC 8 cut(s) 381, 703, 772, 970, 1091, 1127, 1201, 1230
LguI GCTCTTC 1 cut(s) 1136
LmnI GCTCC 1 cut(s) 1391
Lsp1109I GCAGC 4 cut(s) 349, 487, 769, 845
LweI GCATC 2 cut(s) 820, 1460
MaeI CTAG 4 cut(s) 374, 471, 699, 1310
MaeII ACGT 3 cut(s) 825, 1378, 1416
MaeIII GTNAC 3 cut(s) 235, 349, 1219
MalI GATC 8 cut(s) 383, 705, 774, 972, 1093, 1129, 1203, 1232
MboI GATC 8 cut(s) 381, 703, 772, 970, 1091, 1127, 1201, 1230
MfeI CAATTG 1 cut(s) 47
MflI RGATCY 4 cut(s) 703, 1127, 1201, 1230
MluCI AATT 5 cut(s) 47, 625, 658, 813, 1178
MlyI GAGTC 4 cut(s) 32, 568, 641, 896
MnlI CCTC 9 cut(s) 440, 574, 944, 1039, 1083, 1236, 1265, 1399, 1417
MroXI GAANNNNTTC 3 cut(s) 480, 681, 1337
MseI TTAA 4 cut(s) 518, 909, 1115, 1419
MslI CAYNNNNRTG 1 cut(s) 828
MspA1I CMGCKG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 138, 231
MunI CAATTG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 922
MvaI CCWGG 2 cut(s) 138, 231
MvnI CGCG 2 cut(s) 507, 539
MwoI GCNNNNNNNGC 6 cut(s) 476, 547, 839, 848, 1034, 1391
NdeI CATATG 1 cut(s) 838
NdeII GATC 8 cut(s) 381, 703, 772, 970, 1091, 1127, 1201, 1230
NlaIII CATG 2 cut(s) 916, 1345
NlaIV GGNNCC 2 cut(s) 751, 932
NmuCI GTSAC 1 cut(s) 1219
NsbI TGCGCA 1 cut(s) 1384
NspV TTCGAA 1 cut(s) 1182
PceI AGGCCT 1 cut(s) 1028
PciSI GCTCTTC 1 cut(s) 1136
PctI GAATGC 1 cut(s) 922
PdmI GAANNNNTTC 3 cut(s) 480, 681, 1337
PfeI GAWTC 6 cut(s) 164, 612, 677, 721, 977, 1086
PkrI GCNGC 4 cut(s) 364, 502, 784, 835
PleI GAGTC 4 cut(s) 32, 568, 641, 896
PmaCI CACGTG 1 cut(s) 826
PmlI CACGTG 1 cut(s) 826
PpsI GAGTC 4 cut(s) 32, 568, 641, 896
Ppu21I YACGTR 1 cut(s) 826
Psp6I CCWGG 2 cut(s) 136, 229
PspCI CACGTG 1 cut(s) 826
PspFI CCCAGC 1 cut(s) 293
PspGI CCWGG 2 cut(s) 136, 229
PspN4I GGNNCC 2 cut(s) 751, 932
PspPI GGNCC 2 cut(s) 193, 750
PstI CTGCAG 1 cut(s) 901
PsuI RGATCY 4 cut(s) 703, 1127, 1201, 1230
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 2 cut(s) 59, 1374
RsaNI GTAC 2 cut(s) 58, 1373
RseI CAYNNNNRTG 1 cut(s) 828
SapI GCTCTTC 1 cut(s) 1136
SaqAI TTAA 4 cut(s) 518, 909, 1115, 1419
SatI GCNGC 4 cut(s) 363, 501, 783, 834
Sau3AI GATC 8 cut(s) 381, 703, 772, 970, 1091, 1127, 1201, 1230
Sau96I GGNCC 2 cut(s) 193, 750
SchI GAGTC 4 cut(s) 32, 568, 641, 896
ScrFI CCNGG 2 cut(s) 138, 231
SfaNI GCATC 2 cut(s) 820, 1460
SfcI CTRYAG 1 cut(s) 897
SfuI TTCGAA 1 cut(s) 1182
SinI GGWCC 2 cut(s) 193, 750
SmiMI CAYNNNNRTG 1 cut(s) 828
SmlI CTYRAG 2 cut(s) 542, 1197
SmoI CTYRAG 2 cut(s) 542, 1197
Sse9I AATT 5 cut(s) 47, 625, 658, 813, 1178
SseBI AGGCCT 1 cut(s) 1028
SsiI CCGC 3 cut(s) 15, 765, 1252
SspMI CTAG 4 cut(s) 374, 471, 699, 1310
StuI AGGCCT 1 cut(s) 1028
StyD4I CCNGG 2 cut(s) 136, 229
TaaI ACNGT 2 cut(s) 887, 1301
TaiI ACGT 3 cut(s) 828, 1381, 1419
TaqI TCGA 5 cut(s) 105, 214, 945, 1182, 1212
TasI AATT 5 cut(s) 47, 625, 658, 813, 1178
TfiI GAWTC 6 cut(s) 164, 612, 677, 721, 977, 1086
Tru1I TTAA 4 cut(s) 518, 909, 1115, 1419
Tru9I TTAA 4 cut(s) 518, 909, 1115, 1419
TscAI CASTG 4 cut(s) 292, 792, 1323, 1357
TseFI GTSAC 1 cut(s) 1219
TseI GCWGC 4 cut(s) 362, 500, 782, 833
Tsp45I GTSAC 1 cut(s) 1219
TspDTI ATGAA 4 cut(s) 70, 137, 929, 1330
TspGWI ACGGA 2 cut(s) 75, 1418
TspRI CASTG 4 cut(s) 292, 792, 1323, 1357
VpaK11BI GGWCC 2 cut(s) 193, 750
XapI RAATTY 2 cut(s) 813, 1178
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 558
XmnI GAANNNNTTC 3 cut(s) 480, 681, 1337
XspI CTAG 4 cut(s) 374, 471, 699, 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.