AT2G21820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0018713
Physical Location & Seq
Reverse (-)
9302853 .. 9303408
556 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21820.1

Sequence Viewer

Length: 237 bp
ATGTCGGGAGCACAAGGAGCAGAGCCGATGGATTCAAGAACGGCGACAACGTACGAGTCAGTGGAAGGAGGACAGAACAAGACGAAGCTTGATATAAGGTCAAAGGAAGACGAAGGTGGGATTCAAGTTGACAAGCTTCAAGACAAGGTCTCTGATGCTGCTGGTCTTGGCGGACCTGTCTTTGGTGCTGGTAAAGACGACAAGAAGCAGGATCTTGGTGTTACCGGTACCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.0

Weight (kDa)

4.62

Isoelectric Point (pI)

34.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018713)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21820
malus_domestica MD05G1241500.v1.1
pyrus_communis pycom10g18580
rosa_chinensis RchiOBHm_Chr5g0022881
rosa_multiflora Rmu_sc0010181.1_g000003
rosa_samantha Rh5BG160800 Rh5CG175400 Rh5DG162100
rosa_wichuraiana Rw5G014550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 227
AciI CCGC 1 cut(s) 171
AclWI GGATC 1 cut(s) 219
AfaI GTAC 2 cut(s) 53, 229
AfiI CCNNNNNNNGG 1 cut(s) 182
AgeI ACCGGT 1 cut(s) 224
AgsI TTSAA 3 cut(s) 36, 125, 140
AluBI AGCT 2 cut(s) 88, 136
AluI AGCT 2 cut(s) 88, 136
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 158
AsiGI ACCGGT 1 cut(s) 224
Asp718I GGTACC 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 173
AvaII GGWCC 1 cut(s) 173
BanI GGYRCC 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 235
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 229
BmsI GCATC 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 154
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse118I RCCGGY 2 cut(s) 224, 230
BseLI CCNNNNNNNGG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 145
BshNI GGYRCC 1 cut(s) 227
BshTI ACCGGT 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 2 cut(s) 225, 231
BsiWI CGTACG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 154
Bso31I GGTCTC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 229
BspPI GGATC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 154
BsrFI RCCGGY 2 cut(s) 224, 230
BssAI RCCGGY 2 cut(s) 224, 230
BssMI GATC 1 cut(s) 211
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 66
Cfr10I RCCGGY 2 cut(s) 224, 230
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 52, 228
CspAI ACCGGT 1 cut(s) 224
CviJI RGCY 4 cut(s) 25, 88, 136, 234
CviKI_1 RGCY 4 cut(s) 25, 88, 136, 234
CviQI GTAC 2 cut(s) 52, 228
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
EciI GGCGGA 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 173
FaiI YATR 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 235
GluI GCNGC 1 cut(s) 159
HapII CCGG 2 cut(s) 225, 231
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HindIII AAGCTT 2 cut(s) 86, 134
HinfI GANTC 3 cut(s) 32, 56, 121
HpaII CCGG 2 cut(s) 225, 231
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 3 cut(s) 6, 36, 140
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 2 cut(s) 59, 107
HpyCH4IV ACGT 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 50
KpnI GGTACC 1 cut(s) 231
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 2 cut(s) 8, 17
LpnPI CCDG 4 cut(s) 147, 174, 189, 194
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 235
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 220
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 1 cut(s) 119
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 13
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 1 cut(s) 62
MspI CCGG 2 cut(s) 225, 231
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 1 cut(s) 211
NlaIV GGNNCC 1 cut(s) 229
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PfeI GAWTC 2 cut(s) 32, 121
Pfl23II CGTACG 1 cut(s) 51
PflFI GACNNNGTC 1 cut(s) 146
PinAI ACCGGT 1 cut(s) 224
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PspLI CGTACG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 1 cut(s) 173
PsuI RGATCY 1 cut(s) 211
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 2 cut(s) 53, 229
RsaNI GTAC 2 cut(s) 52, 228
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 65
SduI GDGCHC 1 cut(s) 13
SetI ASST 7 cut(s) 53, 90, 101, 118, 138, 150, 178
SfaNI GCATC 1 cut(s) 145
SinI GGWCC 1 cut(s) 173
SsiI CCGC 1 cut(s) 171
SspMI CTAG 1 cut(s) 235
TaiI ACGT 1 cut(s) 53
TfiI GAWTC 2 cut(s) 32, 121
TscAI CASTG 1 cut(s) 66
TseI GCWGC 1 cut(s) 158
TspRI CASTG 1 cut(s) 66
Tth111I GACNNNGTC 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 173
XspI CTAG 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.