Rh5BG160800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018713
Physical Location & Seq
Reverse (-)
16788272 .. 16788883
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG160800.1

Sequence Viewer

Length: 240 bp
ATGTCAGGAGCACAGGGAGCTCAGCCGCCGGAGTCATTCACGGCGGCGACATACAAGTCAGTTGAAGGAGGAGAGAACAAAAGCAGGACTGACATACGTGCCCGGGAGGACCAGGGAAGCGTTCAGATTGATAAGCTCCAGGACAAGGTGAAGGACCCTGTTGGAGAAGGCGGCCCGGTCTTTGGTGTGGGTAAAGATCCCCATAAAGACGACCTGGGTGTCACCGGCACCGGCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.23

Weight (kDa)

4.88

Isoelectric Point (pI)

33.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018713)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21820
malus_domestica MD05G1241500.v1.1
pyrus_communis pycom10g18580
rosa_chinensis RchiOBHm_Chr5g0022881
rosa_multiflora Rmu_sc0010181.1_g000003
rosa_samantha Rh5BG160800 Rh5CG175400 Rh5DG162100
rosa_wichuraiana Rw5G014550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 55, 218
AccB1I GGYRCC 1 cut(s) 227
AciI CCGC 3 cut(s) 26, 44, 171
AclWI GGATC 1 cut(s) 191
AfiI CCNNNNNNNGG 2 cut(s) 145, 182
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 3 cut(s) 111, 138, 213
AluBI AGCT 2 cut(s) 20, 136
AluI AGCT 2 cut(s) 20, 136
Alw21I GWGCWC 2 cut(s) 13, 22
AlwI GGATC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 1 cut(s) 172
AspS9I GGNCC 3 cut(s) 109, 154, 173
AsuC2I CCSGG 3 cut(s) 103, 104, 176
AsuHPI GGTGA 2 cut(s) 160, 214
AvaI CYCGRG 1 cut(s) 102
AvaII GGWCC 2 cut(s) 109, 154
BaeGI GKGCMC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 22
Bbv12I GWGCWC 2 cut(s) 13, 22
BceAI ACGGC 1 cut(s) 57
BciT130I CCWGG 3 cut(s) 113, 140, 215
BcnI CCSGG 3 cut(s) 103, 104, 176
BisI GCNGC 3 cut(s) 26, 45, 172
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 3 cut(s) 27, 46, 173
Bme1390I CCNGG 6 cut(s) 103, 104, 113, 140, 176, 215
Bme18I GGWCC 2 cut(s) 109, 154
BmeT110I CYCGRG 1 cut(s) 102
BmgT120I GGNCC 3 cut(s) 109, 154, 173
BmiI GGNNCC 2 cut(s) 156, 229
BmrFI CCNGG 6 cut(s) 103, 104, 113, 140, 176, 215
BpmI CTGGAG 1 cut(s) 122
Bpu1102I GCTNAGC 1 cut(s) 21
BpuMI CCSGG 3 cut(s) 103, 104, 176
BsaAI YACGTR 1 cut(s) 98
BsaJI CCNNGG 3 cut(s) 102, 112, 214
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 182
Bse118I RCCGGY 2 cut(s) 224, 230
BseBI CCWGG 3 cut(s) 113, 140, 215
BseDI CCNNGG 3 cut(s) 102, 112, 214
BseLI CCNNNNNNNGG 2 cut(s) 145, 182
BseMII CTCAG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 84
BseSI GKGCMC 1 cut(s) 103
BshFI GGCC 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 227
BsiHKAI GWGCWC 2 cut(s) 13, 22
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 5 cut(s) 29, 103, 176, 225, 231
BslI CCNNNNNNNGG 2 cut(s) 145, 182
BsnI GGCC 1 cut(s) 174
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 3 cut(s) 13, 22, 103
Bsp143I GATC 1 cut(s) 196
Bsp1720I GCTNAGC 1 cut(s) 21
BspACI CCGC 3 cut(s) 26, 44, 171
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 156, 229
BspPI GGATC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 227
BsrFI RCCGGY 2 cut(s) 224, 230
BssAI RCCGGY 2 cut(s) 224, 230
BssECI CCNNGG 3 cut(s) 102, 112, 214
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 3 cut(s) 113, 140, 215
BstBAI YACGTR 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 21
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 3 cut(s) 113, 140, 215
BstSCI CCNGG 6 cut(s) 101, 102, 111, 138, 174, 213
BstSLI GKGCMC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 1 cut(s) 174
Cfr10I RCCGGY 2 cut(s) 224, 230
Cfr13I GGNCC 3 cut(s) 109, 154, 173
Cfr9I CCCGGG 1 cut(s) 102
CviJI RGCY 4 cut(s) 20, 25, 136, 174
CviKI_1 RGCY 4 cut(s) 20, 25, 136, 174
DdeI CTNAG 1 cut(s) 21
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
DrdI GACNNNNNNGTC 2 cut(s) 55, 218
DseDI GACNNNNNNGTC 2 cut(s) 55, 218
Ecl136II GAGCTC 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 22
Eco47I GGWCC 2 cut(s) 109, 154
Eco53kI GAGCTC 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 3 cut(s) 111, 138, 213
EcoT38I GRGCYC 1 cut(s) 22
FaiI YATR 3 cut(s) 52, 95, 204
Fnu4HI GCNGC 3 cut(s) 26, 45, 172
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 3 cut(s) 26, 45, 172
GluI GCNGC 3 cut(s) 26, 45, 172
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 1 cut(s) 174
HapII CCGG 5 cut(s) 29, 103, 176, 225, 231
HinfI GANTC 1 cut(s) 32
HpaII CCGG 5 cut(s) 29, 103, 176, 225, 231
HphI GGTGA 2 cut(s) 160, 214
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 1 cut(s) 6
HpyAV CCTTC 3 cut(s) 59, 145, 161
HpyCH4IV ACGT 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 21
HpySE526I ACGT 1 cut(s) 97
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 3 cut(s) 8, 17, 141
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 220
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 3 cut(s) 13, 22, 103
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 2 cut(s) 62, 100
MspI CCGG 5 cut(s) 29, 103, 176, 225, 231
MspR9I CCNGG 6 cut(s) 103, 104, 113, 140, 176, 215
MvaI CCWGG 3 cut(s) 113, 140, 215
MwoI GCNNNNNNNGC 1 cut(s) 17
NciI CCSGG 3 cut(s) 103, 104, 176
NdeII GATC 1 cut(s) 196
NlaIV GGNNCC 2 cut(s) 156, 229
NmuCI GTSAC 1 cut(s) 220
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 3 cut(s) 27, 46, 173
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 154
Psp124BI GAGCTC 1 cut(s) 22
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 3 cut(s) 111, 138, 213
PspGI CCWGG 3 cut(s) 111, 138, 213
PspN4I GGNNCC 2 cut(s) 156, 229
PspPI GGNCC 3 cut(s) 109, 154, 173
PspPPI RGGWCCY 1 cut(s) 154
PsuI RGATCY 1 cut(s) 196
SacI GAGCTC 1 cut(s) 22
SatI GCNGC 3 cut(s) 26, 45, 172
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 3 cut(s) 109, 154, 173
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 6 cut(s) 103, 104, 113, 140, 176, 215
SduI GDGCHC 3 cut(s) 13, 22, 103
SetI ASST 5 cut(s) 22, 100, 138, 150, 216
SgrAI CRCCGGYG 1 cut(s) 230
SinI GGWCC 2 cut(s) 109, 154
SmaI CCCGGG 1 cut(s) 104
SsiI CCGC 3 cut(s) 26, 44, 171
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 6 cut(s) 101, 102, 111, 138, 174, 213
TaiI ACGT 1 cut(s) 100
TauI GCSGC 3 cut(s) 28, 47, 174
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspMI CCCGGG 1 cut(s) 102
VpaK11BI GGWCC 2 cut(s) 109, 154
XmaI CCCGGG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.