MD05G1241500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0018713
Physical Location & Seq
Forward (+)
37189775 .. 37190011
237 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1241500.v1.1.491

Sequence Viewer

Length: 237 bp
ATGTCAGGAGCACAGGGAGCTCAGCCGCCGGGGTCACAGACGGCGACAACGTACGAGTCGGTTCAAGGAGGAGAGAACAAGAGCAGGACTGAGCTGCGATCCAAGCAGGACCAAGGTGGCGTTCAGATTCACAAACTACAGGACAAGGTTGAAGACGCTGCCGGCAAAGGTGGCCCTGTCTTTGGTGCCGGTAAAGATCCAAAGAAAGACGACCTCGGTGTCACCGGCACTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

7.94

Weight (kDa)

6.55

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018713)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21820
malus_domestica MD05G1241500.v1.1
pyrus_communis pycom10g18580
rosa_chinensis RchiOBHm_Chr5g0022881
rosa_multiflora Rmu_sc0010181.1_g000003
rosa_samantha Rh5BG160800 Rh5CG175400 Rh5DG162100
rosa_wichuraiana Rw5G014550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 185
AciI CCGC 1 cut(s) 26
AclWI GGATC 2 cut(s) 93, 191
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 182
AgsI TTSAA 2 cut(s) 65, 152
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AluBI AGCT 2 cut(s) 20, 94
AluI AGCT 2 cut(s) 20, 94
Alw21I GWGCWC 2 cut(s) 13, 22
AlwI GGATC 2 cut(s) 93, 191
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 94, 158
AspS9I GGNCC 2 cut(s) 109, 173
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 214
AvaII GGWCC 1 cut(s) 109
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 2 cut(s) 13, 22
BbvI GCAGC 2 cut(s) 81, 145
BceAI ACGGC 1 cut(s) 57
BcnI CCSGG 1 cut(s) 30
BfaI CTAG 1 cut(s) 235
BfmI CTRYAG 1 cut(s) 137
BisI GCNGC 3 cut(s) 26, 95, 159
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 3 cut(s) 27, 96, 160
Bme1390I CCNGG 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 2 cut(s) 109, 173
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 159
Bpu1102I GCTNAGC 1 cut(s) 21
BpuMI CCSGG 1 cut(s) 30
BsaJI CCNNGG 3 cut(s) 29, 112, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse118I RCCGGY 3 cut(s) 161, 188, 224
Bse1I ACTGG 1 cut(s) 235
BseDI CCNNGG 3 cut(s) 29, 112, 214
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 2 cut(s) 35, 81
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 81, 145
BshFI GGCC 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 185
BsiHKAI GWGCWC 2 cut(s) 13, 22
BsiSI CCGG 4 cut(s) 29, 162, 189, 225
BsiWI CGTACG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 182
BsnI GGCC 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 13, 22
Bsp143I GATC 2 cut(s) 98, 196
Bsp1720I GCTNAGC 1 cut(s) 21
BspACI CCGC 1 cut(s) 26
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 2 cut(s) 34, 82
BspLI GGNNCC 1 cut(s) 187
BspPI GGATC 2 cut(s) 93, 191
BspT107I GGYRCC 1 cut(s) 185
BsrFI RCCGGY 3 cut(s) 161, 188, 224
BsrI ACTGG 1 cut(s) 235
BssAI RCCGGY 3 cut(s) 161, 188, 224
BssECI CCNNGG 3 cut(s) 29, 112, 214
BssMI GATC 2 cut(s) 98, 196
BssT1I CCWWGG 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 2 cut(s) 21, 90
BstKTI GATC 2 cut(s) 101, 199
BstMBI GATC 2 cut(s) 98, 196
BstMWI GCNNNNNNNGC 3 cut(s) 17, 103, 171
BstSCI CCNGG 1 cut(s) 28
BstSFI CTRYAG 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 81, 145
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 163
Cfr10I RCCGGY 3 cut(s) 161, 188, 224
Cfr13I GGNCC 2 cut(s) 109, 173
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 52
CviJI RGCY 5 cut(s) 20, 25, 94, 174, 234
CviKI_1 RGCY 5 cut(s) 20, 25, 94, 174, 234
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 21, 90
DpnI GATC 2 cut(s) 100, 198
DpnII GATC 2 cut(s) 98, 196
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 112
Fnu4HI GCNGC 3 cut(s) 26, 95, 159
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 3 cut(s) 26, 95, 159
FspBI CTAG 1 cut(s) 235
GluI GCNGC 3 cut(s) 26, 95, 159
HaeIII GGCC 1 cut(s) 174
HapII CCGG 4 cut(s) 29, 162, 189, 225
HgaI GACGC 1 cut(s) 164
HinfI GANTC 2 cut(s) 56, 127
HpaII CCGG 4 cut(s) 29, 162, 189, 225
HphI GGTGA 1 cut(s) 214
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 1 cut(s) 6
HpyCH4IV ACGT 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 103, 171
HpyF3I CTNAG 2 cut(s) 21, 90
HpySE526I ACGT 1 cut(s) 50
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Kzo9I GATC 2 cut(s) 98, 196
LmnI GCTCC 2 cut(s) 8, 17
LpnPI CCDG 8 cut(s) 42, 70, 92, 125, 175, 189, 202, 216
Lsp1109I GCAGC 2 cut(s) 81, 145
MaeI CTAG 1 cut(s) 235
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 2 cut(s) 33, 220
MalI GATC 2 cut(s) 100, 198
MboI GATC 2 cut(s) 98, 196
MboII GAAGA 1 cut(s) 164
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 2 cut(s) 13, 22
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 2 cut(s) 62, 224
MroNI GCCGGC 1 cut(s) 161
MspI CCGG 4 cut(s) 29, 162, 189, 225
MspR9I CCNGG 1 cut(s) 30
MwoI GCNNNNNNNGC 3 cut(s) 17, 103, 171
NaeI GCCGGC 1 cut(s) 163
NciI CCSGG 1 cut(s) 30
NdeII GATC 2 cut(s) 98, 196
NgoMIV GCCGGC 1 cut(s) 161
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 2 cut(s) 33, 220
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PdiI GCCGGC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 127
Pfl23II CGTACG 1 cut(s) 51
PkrI GCNGC 3 cut(s) 27, 96, 160
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Psp124BI GAGCTC 1 cut(s) 22
PspLI CGTACG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 2 cut(s) 109, 173
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SacI GAGCTC 1 cut(s) 22
SatI GCNGC 3 cut(s) 26, 95, 159
Sau3AI GATC 2 cut(s) 98, 196
Sau96I GGNCC 2 cut(s) 109, 173
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 2 cut(s) 13, 22
SetI ASST 7 cut(s) 22, 53, 96, 118, 150, 172, 216
SfcI CTRYAG 1 cut(s) 137
SinI GGWCC 1 cut(s) 109
SsiI CCGC 1 cut(s) 26
SspMI CTAG 1 cut(s) 235
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 28
StyI CCWWGG 1 cut(s) 112
TaiI ACGT 1 cut(s) 53
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 2 cut(s) 33, 220
TseI GCWGC 2 cut(s) 94, 158
Tsp45I GTSAC 2 cut(s) 33, 220
TspRI CASTG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 109
XspI CTAG 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.