AT2G24240

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015261
Physical Location & Seq
Forward (+)
10310482 .. 10312573
2092 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24240.1

Sequence Viewer

Length: 1326 bp
ATGGGTATCTCAAAAGACAGGATCAAATTCAACGTTGGTGGACGACTCTTCGAAACGACGGCGACGACGTTAGCAAACGCAGGTCGTGATTCTTTCTTCGGAGCATTGTTCGACGACGAATGGAATCTTTCACCACTTGAAGATTCCATTCTTTTCGTAGACAGAAACTCAGATTGCTTCGCAGTTCTTCTTGATCTTCTCCGTACGGGAGACCTTAACGTTCCGGCCAACATCCCTGAGCGTCTCCTTCATAGAGAAGCTTCTTTCTACGGTTTACTTGACCATGTACGGACCGCTAAATGGGGTCCGTTTGATGGTAACCGTCTTCGTCTATCGGATTCTGTTAAAGGAATTGCTCCCGGAGACGGAACCGCCATCAGGGCAGGTCCTGATGGCGGTTGTTGCGTCGCGCACGGGAGTGTTGTTCATGTTTTTGATTGGATGTTGGAAGAACATTCTCCGATCAACCTTGATTACCAGAGAGTAAACGATGTTGGCTGGATTGATTCAGACAACATCGTACTCTCTGCTTGTGAGAAATTGGGAAGAGGAGATGGAGGAATGGGACTGTTCAGTTCATCTTCCGGTGATCTTCGGTATAAGTTTCAGGTCTGTCATGAGAATCAGGTGAAGAGTTATACAGCTGGAGCTTTGAGTTTTTCGCCGGATTATGAGATTTTTGCGAGCTGCAAAGGTCGGAGTAATGAGTATGGAATCGGAGTTTGGGATCAGATAACTGGAAAGCAAACCGATTTCTTCTACGAGAGTCCTGGTTGGTCACTTGGTGATGCTGACAAGCTTCAATGGCTGAATGGTAAGAACTGTCTTCTTGTGGCTACATTGTTTCCAAGAAAGGACAACTGTTACATTAGTTTGTTGGATTTTCGGGACAAGAACATGGTTTGGTCATGGTCGGATATTGGGTCTCCTATGGCGATAGACGAGAAGAGAGTGAGAGATGCAATAGCTATGGAAGATAGCAATTCGATTTGTGTGGTGAATGAGTTTGAGGATTTGGGGTTTATTGATCTGAGGATGTATGGAGGAAGCGTGAGGTGGAGTTCGAGAAGTAAACTGATGAAGAGTAAGATGCCTGATGAGCCTTGTTACCCGAAACTAGCTTTGCATGAAGGCCAGCTTTTCTCATCAATGAATGATTCTATCTCTGTGTTCTGTGGACCAGACTGGGTCTTAACTTCTAGGCTAAGAAGAAGCTATGGTGGCTCAATCTGTGATTTCTCCATTGGTGGCGACCGCCTTTTTGCATTGCATAGCGAGGAGAATGTGTTTGATGTCTGGGAGACTCCGCCTTGTCCGATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2

Protein Analysis

441

Amino Acids

49.17

Weight (kDa)

4.9

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 8 - 95 1.1e-14 BTB/POZ domain
Beta_prop_At2g24240 PF25279 118 - 435 3.1e-179 At2g24240-like, C-terminal beta propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24240 AT4G30940
fragaria_vesca FvH4_1g01020
malus_domestica MD15G1152600.v1.1
prunus_persica Prupe.7G262000_v2.0.a1
pyrus_communis pycom15g13720
rosa_chinensis RchiOBHm_Chr2g0085761
rosa_laevigata RLG00000015717
rosa_multiflora Rmu_co8412055.1_g000001 Rmu_sc0009759.1_g000003
rosa_roxburghii Rroxscaffold_2G00155060
rosa_rugosa Rorug01G0463000 Rorug01G0463000
rosa_samantha Rh2BG012800 Rh2CG013500
rosa_wichuraiana Rw2G001080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 71, 374
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 410
AciI CCGC 5 cut(s) 294, 372, 396, 1255, 1307
AclI AACGTT 2 cut(s) 33, 219
AclWI GGATC 2 cut(s) 29, 735
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 1 cut(s) 26
AdeI CACNNNGTG 1 cut(s) 785
AfaI GTAC 3 cut(s) 205, 288, 522
AfiI CCNNNNNNNGG 5 cut(s) 300, 314, 365, 378, 395
AgsI TTSAA 3 cut(s) 31, 140, 803
AjnI CCWGG 1 cut(s) 769
AjuI GAANNNNNNNTTGG 2 cut(s) 706, 738
AleI CACNNNNGTG 1 cut(s) 417
AluBI AGCT 9 cut(s) 260, 644, 650, 687, 799, 968, 1121, 1138, 1215
AluI AGCT 9 cut(s) 260, 644, 650, 687, 799, 968, 1121, 1138, 1215
Alw26I GTCTC 5 cut(s) 204, 248, 357, 930, 1295
AlwI GGATC 2 cut(s) 29, 735
AlwNI CAGNNNCTG 1 cut(s) 389
AoxI GGCC 2 cut(s) 225, 1132
ApeKI GCWGC 1 cut(s) 687
ApoI RAATTY 1 cut(s) 26
ArsI GACNNNNNNTTYG 2 cut(s) 1244, 1276
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 4 cut(s) 291, 305, 386, 1178
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 5 cut(s) 123, 599, 640, 797, 1009
AsuII TTCGAA 1 cut(s) 51
AvaII GGWCC 4 cut(s) 291, 305, 386, 1178
BbsI GAAGAC 2 cut(s) 317, 818
BbvI GCAGC 1 cut(s) 674
BccI CCATC 4 cut(s) 308, 383, 386, 548
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 771
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 5 cut(s) 204, 248, 357, 930, 1295
BfaI CTAG 2 cut(s) 1118, 1200
BfuAI ACCTGC 2 cut(s) 71, 374
BglI GCCNNNNNGGC 1 cut(s) 380
BisI GCNGC 1 cut(s) 688
BlsI GCNGC 1 cut(s) 689
Bme1390I CCNGG 2 cut(s) 360, 771
Bme18I GGWCC 4 cut(s) 291, 305, 386, 1178
BmgT120I GGNCC 4 cut(s) 291, 305, 386, 1178
BmiI GGNNCC 2 cut(s) 306, 370
BmrFI CCNGG 2 cut(s) 360, 771
BmrI ACTGGG 1 cut(s) 1195
BmsI GCATC 3 cut(s) 778, 949, 1080
BmuI ACTGGG 1 cut(s) 1195
BpiI GAAGAC 2 cut(s) 317, 818
BpmI CTGGAG 1 cut(s) 666
Bpu10I CCTNAGC 1 cut(s) 237
Bpu14I TTCGAA 1 cut(s) 51
BpuMI CCSGG 1 cut(s) 360
BsaI GGTCTC 2 cut(s) 204, 930
BsaWI WCCGGW 1 cut(s) 584
BsaXI ACNNNNNCTCC 4 cut(s) 1035, 1065, 1271, 1301
Bsc4I CCNNNNNNNGG 5 cut(s) 300, 314, 365, 378, 395
Bse1I ACTGG 2 cut(s) 742, 1190
Bse3DI GCAATG 1 cut(s) 1265
BseBI CCWGG 1 cut(s) 771
BseGI GGATG 3 cut(s) 231, 447, 1041
BseLI CCNNNNNNNGG 5 cut(s) 300, 314, 365, 378, 395
BseMI GCAATG 1 cut(s) 1265
BseMII CTCAG 3 cut(s) 183, 228, 1022
BseNI ACTGG 2 cut(s) 742, 1190
BseRI GAGGAG 2 cut(s) 564, 1292
BseXI GCAGC 1 cut(s) 674
Bsh1236I CGCG 1 cut(s) 410
Bsh1285I CGRYCG 1 cut(s) 1255
BshFI GGCC 2 cut(s) 227, 1134
BsiEI CGRYCG 1 cut(s) 1255
BsiSI CCGG 4 cut(s) 224, 360, 585, 665
BsiWI CGTACG 1 cut(s) 203
BslFI GGGAC 2 cut(s) 579, 902
BslI CCNNNNNNNGG 5 cut(s) 300, 314, 365, 378, 395
BsmAI GTCTC 5 cut(s) 204, 248, 357, 930, 1295
BsmBI CGTCTC 2 cut(s) 248, 357
BsmFI GGGAC 2 cut(s) 579, 902
BsnI GGCC 2 cut(s) 227, 1134
Bso31I GGTCTC 2 cut(s) 204, 930
Bsp119I TTCGAA 1 cut(s) 51
Bsp143I GATC 7 cut(s) 21, 193, 462, 589, 727, 1027, 1317
BspACI CCGC 5 cut(s) 294, 372, 396, 1255, 1307
BspANI GGCC 2 cut(s) 227, 1134
BspCNI CTCAG 3 cut(s) 182, 229, 1023
BspFNI CGCG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 616
BspLI GGNNCC 2 cut(s) 306, 370
BspMI ACCTGC 2 cut(s) 71, 374
BspPI GGATC 2 cut(s) 29, 735
BspT104I TTCGAA 1 cut(s) 51
BspTNI GGTCTC 2 cut(s) 204, 930
BsrDI GCAATG 1 cut(s) 1265
BsrI ACTGG 2 cut(s) 742, 1190
BssMI GATC 7 cut(s) 21, 193, 462, 589, 727, 1027, 1317
Bst2UI CCWGG 1 cut(s) 771
Bst4CI ACNGT 5 cut(s) 272, 323, 570, 824, 863
Bst6I CTCTTC 5 cut(s) 53, 541, 626, 941, 1076
BstBI TTCGAA 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 685, 1136
BstDEI CTNAG 4 cut(s) 169, 237, 1031, 1205
BstEII GGTNACC 1 cut(s) 317
BstF5I GGATG 3 cut(s) 231, 447, 1041
BstFNI CGCG 1 cut(s) 410
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 7 cut(s) 24, 196, 465, 592, 730, 1030, 1320
BstMAI GTCTC 5 cut(s) 204, 248, 357, 930, 1295
BstMBI GATC 7 cut(s) 21, 193, 462, 589, 727, 1027, 1317
BstMCI CGRYCG 1 cut(s) 1255
BstMWI GCNNNNNNNGC 5 cut(s) 380, 402, 805, 1099, 1221
BstNI CCWGG 1 cut(s) 771
BstPI GGTNACC 1 cut(s) 317
BstSCI CCNGG 2 cut(s) 358, 769
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 1 cut(s) 674
BstV2I GAAGAC 2 cut(s) 317, 818
BsuRI GGCC 2 cut(s) 227, 1134
BtsCI GGATG 3 cut(s) 231, 447, 1041
BveI ACCTGC 2 cut(s) 71, 374
Cac8I GCNNGC 2 cut(s) 685, 1136
CaiI CAGNNNCTG 1 cut(s) 389
CciI TCATGA 1 cut(s) 616
CfoI GCGC 1 cut(s) 412
Cfr13I GGNCC 4 cut(s) 291, 305, 386, 1178
CpoI CGGWCCG 1 cut(s) 291
CseI GACGC 2 cut(s) 230, 394
Csp6I GTAC 3 cut(s) 204, 287, 521
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CspI CGGWCCG 1 cut(s) 291
CviAII CATG 6 cut(s) 284, 428, 617, 898, 909, 1127
CviQI GTAC 3 cut(s) 204, 287, 521
DdeI CTNAG 4 cut(s) 169, 237, 1031, 1205
DpnI GATC 7 cut(s) 23, 195, 464, 591, 729, 1029, 1319
DpnII GATC 7 cut(s) 21, 193, 462, 589, 727, 1027, 1317
DraIII CACNNNGTG 1 cut(s) 785
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 5 cut(s) 53, 541, 626, 941, 1076
EarI CTCTTC 5 cut(s) 53, 541, 626, 941, 1076
EciI GGCGGA 1 cut(s) 1296
Eco31I GGTCTC 2 cut(s) 204, 930
Eco47I GGWCC 4 cut(s) 291, 305, 386, 1178
Eco91I GGTNACC 1 cut(s) 317
EcoO109I RGGNCCY 1 cut(s) 386
EcoO65I GGTNACC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 769
Esp3I CGTCTC 2 cut(s) 248, 357
FaeI CATG 6 cut(s) 287, 431, 620, 901, 912, 1130
FalI AAGNNNNNCTT 2 cut(s) 1122, 1154
FaqI GGGAC 2 cut(s) 579, 902
FatI CATG 6 cut(s) 283, 427, 616, 897, 908, 1126
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 688
FokI GGATG 3 cut(s) 218, 454, 1048
Fsp4HI GCNGC 1 cut(s) 688
FspBI CTAG 2 cut(s) 1118, 1200
GlaI GCGC 1 cut(s) 411
GluI GCNGC 1 cut(s) 688
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 2 cut(s) 227, 1134
HapII CCGG 4 cut(s) 224, 360, 585, 665
HgaI GACGC 2 cut(s) 230, 394
HhaI GCGC 1 cut(s) 412
Hin1II CATG 6 cut(s) 287, 431, 620, 901, 912, 1130
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HindIII AAGCTT 2 cut(s) 258, 797
HpaII CCGG 4 cut(s) 224, 360, 585, 665
HphI GGTGA 5 cut(s) 123, 599, 640, 797, 1009
Hpy166II GTNNAC 6 cut(s) 41, 160, 275, 487, 1073, 1178
Hpy188III TCNNGA 6 cut(s) 86, 191, 389, 617, 887, 1065
Hpy8I GTNNAC 6 cut(s) 41, 160, 275, 487, 1073, 1178
Hpy99I CGWCG 6 cut(s) 61, 67, 70, 116, 119, 410
HpyAV CCTTC 2 cut(s) 257, 1124
HpyCH4III ACNGT 5 cut(s) 272, 323, 570, 824, 863
HpyCH4IV ACGT 3 cut(s) 33, 68, 219
HpyCH4V TGCA 5 cut(s) 690, 962, 1126, 1265, 1270
HpyF10VI GCNNNNNNNGC 5 cut(s) 380, 402, 805, 1099, 1221
HpyF3I CTNAG 4 cut(s) 169, 237, 1031, 1205
HpySE526I ACGT 3 cut(s) 33, 68, 219
Hsp92II CATG 6 cut(s) 287, 431, 620, 901, 912, 1130
HspAI GCGC 1 cut(s) 410
Kzo9I GATC 7 cut(s) 21, 193, 462, 589, 727, 1027, 1317
LmnI GCTCC 3 cut(s) 101, 361, 647
Lsp1109I GCAGC 1 cut(s) 674
LweI GCATC 3 cut(s) 778, 949, 1080
MaeI CTAG 2 cut(s) 1118, 1200
MaeII ACGT 3 cut(s) 33, 68, 219
MaeIII GTNAC 4 cut(s) 317, 777, 863, 1106
MalI GATC 7 cut(s) 23, 195, 464, 591, 729, 1029, 1319
MboI GATC 7 cut(s) 21, 193, 462, 589, 727, 1027, 1317
MluCI AATT 4 cut(s) 26, 351, 539, 982
MlyI GAGTC 3 cut(s) 39, 775, 1297
MmeI TCCRAC 4 cut(s) 426, 677, 858, 894
MnlI CCTC 7 cut(s) 542, 551, 1003, 1026, 1037, 1047, 1270
MseI TTAA 3 cut(s) 216, 345, 1193
MslI CAYNNNNRTG 1 cut(s) 417
MspA1I CMGCKG 1 cut(s) 644
MspI CCGG 4 cut(s) 224, 360, 585, 665
MspR9I CCNGG 2 cut(s) 360, 771
MvaI CCWGG 1 cut(s) 771
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 5 cut(s) 380, 402, 805, 1099, 1221
NciI CCSGG 1 cut(s) 360
NdeII GATC 7 cut(s) 21, 193, 462, 589, 727, 1027, 1317
NlaIII CATG 6 cut(s) 287, 431, 620, 901, 912, 1130
NlaIV GGNNCC 2 cut(s) 306, 370
NmuCI GTSAC 1 cut(s) 777
NspV TTCGAA 1 cut(s) 51
OliI CACNNNNGTG 1 cut(s) 417
PagI TCATGA 1 cut(s) 616
PcsI WCGNNNNNNNCGW 2 cut(s) 62, 65
PfeI GAWTC 8 cut(s) 89, 124, 143, 338, 506, 622, 714, 1157
Pfl23II CGTACG 1 cut(s) 203
PflFI GACNNNGTC 1 cut(s) 1187
PfoI TCCNGGA 1 cut(s) 358
PkrI GCNGC 1 cut(s) 689
PleI GAGTC 3 cut(s) 39, 774, 1297
PpsI GAGTC 3 cut(s) 39, 774, 1297
PpuMI RGGWCCY 1 cut(s) 386
Psp1406I AACGTT 2 cut(s) 33, 219
Psp5II RGGWCCY 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 769
PspEI GGTNACC 1 cut(s) 317
PspGI CCWGG 1 cut(s) 769
PspLI CGTACG 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 306, 370
PspPI GGNCC 4 cut(s) 291, 305, 386, 1178
PspPPI RGGWCCY 1 cut(s) 386
PstNI CAGNNNCTG 1 cut(s) 389
PsyI GACNNNGTC 1 cut(s) 1187
PvuII CAGCTG 1 cut(s) 644
RsaI GTAC 3 cut(s) 205, 288, 522
RsaNI GTAC 3 cut(s) 204, 287, 521
RseI CAYNNNNRTG 1 cut(s) 417
Rsr2I CGGWCCG 1 cut(s) 291
RsrII CGGWCCG 1 cut(s) 291
SaqAI TTAA 3 cut(s) 216, 345, 1193
SatI GCNGC 1 cut(s) 688
Sau3AI GATC 7 cut(s) 21, 193, 462, 589, 727, 1027, 1317
Sau96I GGNCC 4 cut(s) 291, 305, 386, 1178
SchI GAGTC 3 cut(s) 39, 775, 1297
ScrFI CCNGG 2 cut(s) 360, 771
SfaNI GCATC 3 cut(s) 778, 949, 1080
SfuI TTCGAA 1 cut(s) 51
SinI GGWCC 4 cut(s) 291, 305, 386, 1178
SmiMI CAYNNNNRTG 1 cut(s) 417
Sse9I AATT 4 cut(s) 26, 351, 539, 982
SsiI CCGC 5 cut(s) 294, 372, 396, 1255, 1307
SspMI CTAG 2 cut(s) 1118, 1200
StyD4I CCNGG 2 cut(s) 358, 769
TaaI ACNGT 5 cut(s) 272, 323, 570, 824, 863
TaiI ACGT 3 cut(s) 36, 71, 222
TaqI TCGA 4 cut(s) 51, 111, 986, 1064
TasI AATT 4 cut(s) 26, 351, 539, 982
TfiI GAWTC 8 cut(s) 89, 124, 143, 338, 506, 622, 714, 1157
Tru1I TTAA 3 cut(s) 216, 345, 1193
Tru9I TTAA 3 cut(s) 216, 345, 1193
TseFI GTSAC 1 cut(s) 777
TseI GCWGC 1 cut(s) 687
Tsp45I GTSAC 1 cut(s) 777
TspDTI ATGAA 6 cut(s) 239, 416, 567, 1094, 1143, 1166
TspGWI ACGGA 4 cut(s) 191, 297, 304, 381
Tth111I GACNNNGTC 1 cut(s) 1187
VpaK11BI GGWCC 4 cut(s) 291, 305, 386, 1178
XapI RAATTY 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 2 cut(s) 1118, 1200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.