AT4G30940

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015261
Physical Location & Seq
Forward (+)
15054873 .. 15056945
2073 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30940.1

Sequence Viewer

Length: 1326 bp
ATGGGTTTATCAAATGACAGGATCAAATTCAACGTTGGTGGCAGAATCTTCGAAACGACAGCGACAACGCTCGCTAACGCAGGTCGCGATTCCTTCTTCGGAGCATTATTCGACGAAAATTGGAATCTTTCACAACCCGGGGATCTCTTCATCGATAGGAATCCAGATTGCTTCGCTGTTCTTCTCGATCTTCTCCGAACAGGAGACTTAAACATCCCGCCTAATATCCCGGAGCGTCTCCTTCACAAAGAAGCAATGTTCTACGGCTTAATAGACCACTTACGAACCGCAAAGTGGGGACCTTTCGACGGTAACAGACTCCACCTATCTCGTTCCGTCACCGGCATAGCTCCTGGAGACGGAACGGCGATAAGAGCTGGTCCGGATGGTGGATGCTGCATAGCTCATGGGAGTGTCGTCCATGTCTTTGATTGGATGCTTGAGGAGCATCCAACGATTAATCTTGATTACCAGAGAGTGAACGATGTTGGTTGGATTGATTCTGGTAACATTGTACTCTCTGCTTGTGAGAGATTAGGAAGAGGAGATGGAGGAATGGGATTGTTTAGCTCATCTTCTGGTGAGCTTAGGTATAAGTTTCAGGTTAGTCATGATAATCAGGTTAAGAGTTATAGTGCTGGAGCTTTGAGTTTTAGTCCTGATTCTAAGATCTTTACGAGCTGTAAAGGAAGAAGTAATGAGTATGGGATTGGAGTTTGGGATCAAAGTACTGGAAAGCAAGTAGATTTCTTTTACGAGAGTCCTGGTTGGTCTTTAGGAGATGCTGATAAGTTGCAATGGTTGAGTGGTAAGAATTGTCTTCTTGTAGCTACTTTGTTTCCAAGGAAAGATAACTGTTATATTAGCTTGTTGGATTTCCGAGAGAAGAACATGGTCTGGTCTTGGTCTGATATCGGATTTCTTACAATGGCGGAAGAGAAGAGAGTGAGAGACGCGATAGCAATGGAAGAGAGCAATTCGATATGTGTGGTGAATGAGTTTGAAGATCTAGGGTTTATTGATCTGAGGATGGATGGAGGAGGGAGTAGTGTGAGGTGGAGTTCTAGGAGCAGGTTGATGAAAAGCAAGATGCCTGATGAGCCTTGTTACCCCAAACTTGCTTTGCATGAAGGCCAGCTCTTCTCGTCTATGAATGATTCCATCTCTGTGTTTTGTGGATCAGACTGGGTTTTGACTTCTAGGTTGAAAAGAAGCTATGGCGGCTCCATTTGTGATTTCTCTATTGGTGGGGATAGGTTGTTTGCATTGCACAGTGAGGAGAATGTGTTTGATGTGTGGGAGACTCTTCCTCCTCCCATCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2

Protein Analysis

441

Amino Acids

49.05

Weight (kDa)

5.1

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 8 - 92 1e-14 BTB/POZ domain
Beta_prop_At2g24240 PF25279 116 - 435 1.4e-175 At2g24240-like, C-terminal beta propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24240 AT4G30940
fragaria_vesca FvH4_1g01020
malus_domestica MD15G1152600.v1.1
prunus_persica Prupe.7G262000_v2.0.a1
pyrus_communis pycom15g13720
rosa_chinensis RchiOBHm_Chr2g0085761
rosa_laevigata RLG00000015717
rosa_multiflora Rmu_co8412055.1_g000001 Rmu_sc0009759.1_g000003
rosa_roxburghii Rroxscaffold_2G00155060
rosa_rugosa Rorug01G0463000 Rorug01G0463000
rosa_samantha Rh2BG012800 Rh2CG013500
rosa_wichuraiana Rw2G001080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 71, 1062
AccII CGCG 2 cut(s) 87, 956
AccIII TCCGGA 1 cut(s) 382
AciI CCGC 4 cut(s) 218, 288, 932, 1221
AclI AACGTT 1 cut(s) 33
AclWI GGATC 4 cut(s) 29, 150, 729, 1186
AcsI RAATTY 1 cut(s) 26
AfaI GTAC 2 cut(s) 516, 730
AfiI CCNNNNNNNGG 4 cut(s) 294, 308, 359, 389
AgsI TTSAA 3 cut(s) 31, 1004, 1207
AjnI CCWGG 2 cut(s) 352, 763
Alw26I GTCTC 5 cut(s) 198, 242, 351, 945, 1295
AlwI GGATC 4 cut(s) 29, 150, 729, 1186
Ama87I CYCGRG 1 cut(s) 137
Aor13HI TCCGGA 1 cut(s) 382
AoxI GGCC 1 cut(s) 1132
ApeKI GCWGC 1 cut(s) 396
ApoI RAATTY 1 cut(s) 26
AseI ATTAAT 1 cut(s) 459
AspS9I GGNCC 2 cut(s) 299, 380
AsuC2I CCSGG 3 cut(s) 138, 139, 230
AsuHPI GGTGA 3 cut(s) 331, 593, 1003
AsuII TTCGAA 1 cut(s) 51
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 2 cut(s) 299, 380
BbsI GAAGAC 1 cut(s) 812
BbvI GCAGC 1 cut(s) 383
BccI CCATC 6 cut(s) 380, 542, 1024, 1028, 1169, 1325
BceAI ACGGC 2 cut(s) 280, 381
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BciT130I CCWGG 2 cut(s) 354, 765
BcnI CCSGG 3 cut(s) 138, 139, 230
BcoDI GTCTC 5 cut(s) 198, 242, 351, 945, 1295
BfaI CTAG 3 cut(s) 1010, 1065, 1200
BfuAI ACCTGC 2 cut(s) 71, 1062
BglII AGATCT 2 cut(s) 669, 1006
BisI GCNGC 2 cut(s) 397, 1222
BlsI GCNGC 2 cut(s) 398, 1223
BmcAI AGTACT 1 cut(s) 730
Bme1390I CCNGG 5 cut(s) 138, 139, 230, 354, 765
Bme18I GGWCC 2 cut(s) 299, 380
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 299, 380
BmiI GGNNCC 2 cut(s) 300, 1225
BmrFI CCNGG 5 cut(s) 138, 139, 230, 354, 765
BmrI ACTGGG 1 cut(s) 1195
BmsI GCATC 5 cut(s) 383, 426, 457, 772, 1080
BmuI ACTGGG 1 cut(s) 1195
BpiI GAAGAC 1 cut(s) 812
BpmI CTGGAG 2 cut(s) 375, 660
Bpu10I CCTNAGC 1 cut(s) 587
Bpu14I TTCGAA 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 3 cut(s) 138, 139, 230
Bsa29I ATCGAT 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 3 cut(s) 137, 138, 842
BsaWI WCCGGW 1 cut(s) 382
BsaXI ACNNNNNCTCC 4 cut(s) 1271, 1294, 1301, 1324
Bsc4I CCNNNNNNNGG 4 cut(s) 294, 308, 359, 389
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 2 cut(s) 736, 1190
Bse3DI GCAATG 4 cut(s) 261, 803, 969, 1265
Bse8I GATNNNNATC 1 cut(s) 159
BseAI TCCGGA 1 cut(s) 382
BseBI CCWGG 2 cut(s) 354, 765
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 3 cut(s) 137, 138, 842
BseGI GGATG 7 cut(s) 213, 391, 398, 441, 448, 1035, 1039
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 4 cut(s) 294, 308, 359, 389
BseMI GCAATG 4 cut(s) 261, 803, 969, 1265
BseMII CTCAG 1 cut(s) 1016
BseNI ACTGG 2 cut(s) 736, 1190
BseRI GAGGAG 5 cut(s) 458, 558, 1053, 1292, 1302
BseXI GCAGC 1 cut(s) 383
Bsh1236I CGCG 2 cut(s) 87, 956
BshFI GGCC 1 cut(s) 1134
BshVI ATCGAT 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 4 cut(s) 138, 230, 342, 383
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 4 cut(s) 294, 308, 359, 389
BsmAI GTCTC 5 cut(s) 198, 242, 351, 945, 1295
BsmBI CGTCTC 3 cut(s) 242, 351, 945
BsmFI GGGAC 1 cut(s) 312
BsnI GGCC 1 cut(s) 1134
BsoBI CYCGRG 1 cut(s) 137
Bsp119I TTCGAA 1 cut(s) 51
Bsp13I TCCGGA 1 cut(s) 382
Bsp143I GATC 8 cut(s) 21, 142, 187, 669, 721, 1006, 1021, 1178
Bsp68I TCGCGA 1 cut(s) 87
BspACI CCGC 4 cut(s) 218, 288, 932, 1221
BspANI GGCC 1 cut(s) 1134
BspCNI CTCAG 1 cut(s) 1017
BspDI ATCGAT 1 cut(s) 153
BspEI TCCGGA 1 cut(s) 382
BspFNI CGCG 2 cut(s) 87, 956
BspHI TCATGA 1 cut(s) 610
BspLI GGNNCC 2 cut(s) 300, 1225
BspMI ACCTGC 2 cut(s) 71, 1062
BspPI GGATC 4 cut(s) 29, 150, 729, 1186
BspQI GCTCTTC 1 cut(s) 1145
BspT104I TTCGAA 1 cut(s) 51
BsrDI GCAATG 4 cut(s) 261, 803, 969, 1265
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 2 cut(s) 736, 1190
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 3 cut(s) 137, 138, 842
BssMI GATC 8 cut(s) 21, 142, 187, 669, 721, 1006, 1021, 1178
BssT1I CCWWGG 1 cut(s) 842
Bst2UI CCWGG 2 cut(s) 354, 765
Bst4CI ACNGT 3 cut(s) 311, 857, 1274
Bst6I CTCTTC 7 cut(s) 152, 535, 930, 935, 963, 1145, 1311
BstBI TTCGAA 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 72, 1136
BstDEI CTNAG 3 cut(s) 587, 666, 1025
BstF5I GGATG 7 cut(s) 213, 391, 398, 441, 448, 1035, 1039
BstFNI CGCG 2 cut(s) 87, 956
BstKTI GATC 8 cut(s) 24, 145, 190, 672, 724, 1009, 1024, 1181
BstMAI GTCTC 5 cut(s) 198, 242, 351, 945, 1295
BstMBI GATC 8 cut(s) 21, 142, 187, 669, 721, 1006, 1021, 1178
BstMWI GCNNNNNNNGC 4 cut(s) 374, 445, 1099, 1221
BstNI CCWGG 2 cut(s) 354, 765
BstSCI CCNGG 5 cut(s) 136, 137, 228, 352, 763
BstUI CGCG 2 cut(s) 87, 956
BstV1I GCAGC 1 cut(s) 383
BstV2I GAAGAC 1 cut(s) 812
BstX2I RGATCY 3 cut(s) 142, 669, 1006
BstYI RGATCY 3 cut(s) 142, 669, 1006
Bsu15I ATCGAT 1 cut(s) 153
BsuRI GGCC 1 cut(s) 1134
BsuTUI ATCGAT 1 cut(s) 153
BtsCI GGATG 7 cut(s) 213, 391, 398, 441, 448, 1035, 1039
BtsIMutI CAGTG 1 cut(s) 1279
BtuMI TCGCGA 1 cut(s) 87
BveI ACCTGC 2 cut(s) 71, 1062
Cac8I GCNNGC 2 cut(s) 72, 1136
CciI TCATGA 1 cut(s) 610
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 2 cut(s) 299, 380
Cfr9I CCCGGG 1 cut(s) 137
ClaI ATCGAT 1 cut(s) 153
CseI GACGC 2 cut(s) 224, 962
Csp6I GTAC 2 cut(s) 515, 729
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 5 cut(s) 407, 422, 611, 892, 1127
CviQI GTAC 2 cut(s) 515, 729
DdeI CTNAG 3 cut(s) 587, 666, 1025
DpnI GATC 8 cut(s) 23, 144, 189, 671, 723, 1008, 1023, 1180
DpnII GATC 8 cut(s) 21, 142, 187, 669, 721, 1006, 1021, 1178
Eam1104I CTCTTC 7 cut(s) 152, 535, 930, 935, 963, 1145, 1311
EarI CTCTTC 7 cut(s) 152, 535, 930, 935, 963, 1145, 1311
EciI GGCGGA 1 cut(s) 947
Eco130I CCWWGG 1 cut(s) 842
Eco32I GATATC 1 cut(s) 913
Eco47I GGWCC 2 cut(s) 299, 380
Eco88I CYCGRG 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 299
EcoRII CCWGG 2 cut(s) 352, 763
EcoRV GATATC 1 cut(s) 913
EcoT14I CCWWGG 1 cut(s) 842
ErhI CCWWGG 1 cut(s) 842
Esp3I CGTCTC 3 cut(s) 242, 351, 945
FaeI CATG 5 cut(s) 410, 425, 614, 895, 1130
FaqI GGGAC 1 cut(s) 312
FatI CATG 5 cut(s) 406, 421, 610, 891, 1126
FauI CCCGC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 397, 1222
FokI GGATG 7 cut(s) 200, 398, 405, 435, 448, 1042, 1046
Fsp4HI GCNGC 2 cut(s) 397, 1222
FspBI CTAG 3 cut(s) 1010, 1065, 1200
GluI GCNGC 2 cut(s) 397, 1222
GsuI CTGGAG 2 cut(s) 375, 660
HaeIII GGCC 1 cut(s) 1134
HapII CCGG 4 cut(s) 138, 230, 342, 383
HgaI GACGC 2 cut(s) 224, 962
Hin1II CATG 5 cut(s) 410, 425, 614, 895, 1130
HpaII CCGG 4 cut(s) 138, 230, 342, 383
HphI GGTGA 3 cut(s) 331, 593, 1003
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 8 cut(s) 101, 197, 881, 910, 917, 1026, 1183, 1325
Hpy188III TCNNGA 7 cut(s) 86, 164, 185, 383, 464, 611, 659
Hpy8I GTNNAC 1 cut(s) 481
Hpy99I CGWCG 2 cut(s) 116, 311
HpyAV CCTTC 3 cut(s) 103, 251, 1124
HpyCH4III ACNGT 3 cut(s) 311, 857, 1274
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 5 cut(s) 399, 796, 1126, 1265, 1270
HpyF10VI GCNNNNNNNGC 4 cut(s) 374, 445, 1099, 1221
HpyF3I CTNAG 3 cut(s) 587, 666, 1025
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 5 cut(s) 410, 425, 614, 895, 1130
Kpn2I TCCGGA 1 cut(s) 382
Kzo9I GATC 8 cut(s) 21, 142, 187, 669, 721, 1006, 1021, 1178
LguI GCTCTTC 1 cut(s) 1145
LmnI GCTCC 7 cut(s) 101, 232, 355, 445, 641, 1068, 1229
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 5 cut(s) 383, 426, 457, 772, 1080
MaeI CTAG 3 cut(s) 1010, 1065, 1200
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 4 cut(s) 311, 337, 506, 1106
MalI GATC 8 cut(s) 23, 144, 189, 671, 723, 1008, 1023, 1180
MboI GATC 8 cut(s) 21, 142, 187, 669, 721, 1006, 1021, 1178
MflI RGATCY 3 cut(s) 142, 669, 1006
MluCI AATT 4 cut(s) 26, 118, 814, 976
MlyI GAGTC 3 cut(s) 312, 769, 1297
MmeI TCCRAC 3 cut(s) 473, 476, 852
MroI TCCGGA 1 cut(s) 382
MseI TTAA 4 cut(s) 209, 269, 459, 624
MslI CAYNNNNRTG 2 cut(s) 411, 1166
MspI CCGG 4 cut(s) 138, 230, 342, 383
MspR9I CCNGG 5 cut(s) 138, 139, 230, 354, 765
MvaI CCWGG 2 cut(s) 354, 765
MvnI CGCG 2 cut(s) 87, 956
MwoI GCNNNNNNNGC 4 cut(s) 374, 445, 1099, 1221
NciI CCSGG 3 cut(s) 138, 139, 230
NdeII GATC 8 cut(s) 21, 142, 187, 669, 721, 1006, 1021, 1178
NlaIII CATG 5 cut(s) 410, 425, 614, 895, 1130
NlaIV GGNNCC 2 cut(s) 300, 1225
NmuCI GTSAC 1 cut(s) 337
NruI TCGCGA 1 cut(s) 87
NspV TTCGAA 1 cut(s) 51
PagI TCATGA 1 cut(s) 610
PciSI GCTCTTC 1 cut(s) 1145
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 7 cut(s) 45, 89, 124, 160, 500, 662, 1157
PfoI TCCNGGA 2 cut(s) 228, 352
PkrI GCNGC 2 cut(s) 398, 1223
PleI GAGTC 3 cut(s) 312, 768, 1297
PpsI GAGTC 3 cut(s) 312, 768, 1297
PpuMI RGGWCCY 1 cut(s) 299
PshBI ATTAAT 1 cut(s) 459
Psp1406I AACGTT 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 299
Psp6I CCWGG 2 cut(s) 352, 763
PspGI CCWGG 2 cut(s) 352, 763
PspN4I GGNNCC 2 cut(s) 300, 1225
PspPI GGNCC 2 cut(s) 299, 380
PspPPI RGGWCCY 1 cut(s) 299
PsuI RGATCY 3 cut(s) 142, 669, 1006
RruI TCGCGA 1 cut(s) 87
RsaI GTAC 2 cut(s) 516, 730
RsaNI GTAC 2 cut(s) 515, 729
RseI CAYNNNNRTG 2 cut(s) 411, 1166
SapI GCTCTTC 1 cut(s) 1145
SaqAI TTAA 4 cut(s) 209, 269, 459, 624
SatI GCNGC 2 cut(s) 397, 1222
Sau3AI GATC 8 cut(s) 21, 142, 187, 669, 721, 1006, 1021, 1178
Sau96I GGNCC 2 cut(s) 299, 380
ScaI AGTACT 1 cut(s) 730
SchI GAGTC 3 cut(s) 312, 769, 1297
ScrFI CCNGG 5 cut(s) 138, 139, 230, 354, 765
SfaNI GCATC 5 cut(s) 383, 426, 457, 772, 1080
SfuI TTCGAA 1 cut(s) 51
SinI GGWCC 2 cut(s) 299, 380
SmaI CCCGGG 1 cut(s) 139
SmiMI CAYNNNNRTG 2 cut(s) 411, 1166
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 4 cut(s) 26, 118, 814, 976
SsiI CCGC 4 cut(s) 218, 288, 932, 1221
SspMI CTAG 3 cut(s) 1010, 1065, 1200
StyD4I CCNGG 5 cut(s) 136, 137, 228, 352, 763
StyI CCWWGG 1 cut(s) 842
TaaI ACNGT 3 cut(s) 311, 857, 1274
TaiI ACGT 1 cut(s) 36
TaqI TCGA 6 cut(s) 51, 111, 153, 186, 306, 980
TasI AATT 4 cut(s) 26, 118, 814, 976
TatI WGTACW 2 cut(s) 514, 728
TauI GCSGC 1 cut(s) 1224
TfiI GAWTC 7 cut(s) 45, 89, 124, 160, 500, 662, 1157
Tru1I TTAA 4 cut(s) 209, 269, 459, 624
Tru9I TTAA 4 cut(s) 209, 269, 459, 624
TscAI CASTG 1 cut(s) 1279
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 1 cut(s) 396
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 4 cut(s) 139, 1094, 1143, 1166
TspGWI ACGGA 2 cut(s) 325, 375
TspMI CCCGGG 1 cut(s) 137
TspRI CASTG 1 cut(s) 1279
VpaK11BI GGWCC 2 cut(s) 299, 380
VspI ATTAAT 1 cut(s) 459
XapI RAATTY 1 cut(s) 26
XmaI CCCGGG 1 cut(s) 137
XspI CTAG 3 cut(s) 1010, 1065, 1200
ZrmI AGTACT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.