Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015146

Physical Location & Seq

Genomic Coordinates Reverse (-)

11977865 .. 11980003

Gene Structure 2139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGACAACACATAAACATAGAAGAACAGAGAAAAATCTCTGTTTTAAGCAATACTACAAATGGATCCTCTGTTTTATCCTCACTCTCTATTTTTTTGCTTCCTTCTTTGTCGACCATGATCAAGATCATAGATCTTCTACTTCCATATCAAAGCATCTTCTTACTAACCATAAACCTAAGCTTTTCGCTTCTCGTGCCATGTTTGAATCTAAAATCCATGATCACAAACTTGGGTTTACCTCTCAACAACCTAACATCAAAACAGACGTATTCAACAATTTGAAAATCTACGTCTATGACTTACCTTCAAAGTTCAACAAAGACTGGTTAGCCAATGATAGATGCACCAACCACCTCTTTGCCGCGGAAGTGGCTCTCCATAAGGCGTTTCTCAGCCTCGAAGGAGATGTAAGGACGGAAGATCCGTATGAAGCCGATTTCTTCTTTGTCCCTGTCTATGTCTCTTGCAACTTCAGCACCATTAATGGCTTTCCAGCGATTGGCCATGCACGATCACTCATCAATGACGCGATAAAGCTCGTCTCGACTCAATACCCTTTTTGGAACCGAACCAGTGGCTCTGATCATGTCTTCACGGCCACACACGACTTTGGCTCTTGCTTCCACACCATGGAGGATAGAGCTATTGCTGATGGAGTACCAATTTTTTTGAGAAACTCTATAATTTTGCAAACATTTGGTGTTACTTTTAACCATCCATGCCAAGAGGTAGAGAACGTGGTGATACCACCGTACATCTCACCGGAAAGTTTACACAAGACTCAAAAGAATATTCCGGTAACTAAAGAACGAGACATTTGGGTTTTTTTCCGTGGCAAGATGGAACTTCATCCCAAAAACATCAGTGGACGCTTCTATAGCAAGCGTGTAAGGACGAATATATGGCGGAGTTACGGTGGTGACCGGAGGTTTTATCTCCAACGGCAAAGATTTGCCGGTTACCAGTCAGAAATAGCTCGTTCTGTTTTCTGTTTATGTCCTCTCGGGTGGGCACCGTGGAGCCCAAGACTTGTTGAATCGGTGGCTCTTGGCTGTGTTCCGGTGATTATAGCCGACGGGATTCGTTTGCCGTTCCCTTCCACCGTACGTTGGCCGGATATTTCGCTCACGGTGGCGGAGAGAGACGTTGGAAAGCTAGGGGATATTTTGGAACACGTGGCGGCTACTAATTTGTCAGTCATACAGAGAAACTTGGAGGATCCGTCTGTTAGGCGGGCCCTTATGTTTAATGTTCCTTCAAGAGAGGGAGATGCCACGTGGCAAGTTTTGGAGGCTTTGTCAAAGAAATTGAATAGGTCTGTTAGAAGGTCAAACTCTTTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

448

Amino Acids

51.69

Weight (kDa)

9.29

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	93 - 392	1.5e-71	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28110
fragaria_vesca	FvH4_3g30840
malus_domestica	MD03G1126500.v1.1 MD11G1146800.v1.1
prunus_persica	Prupe.6G110800_v2.0.a1
pyrus_communis	pycom11g12010
rosa_chinensis	RchiOBHm_Chr5g0057051
rosa_laevigata	RLG00000035148
rosa_multiflora	Rmu_sc0009185.1_g000025
rosa_roxburghii	Rroxscaffold_1G00023140
rosa_rugosa	Rorug05G0305300.1 Rorug05G0305400
rosa_samantha	Rh5BG385800 Rh5CG409300 Rh5DG399500
rosa_wichuraiana	Rw5G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1012
AccB7I	CCANNNNNTGG	2 cut(s)	500, 631
AccI	GTMKAC	1 cut(s)	111
AccII	CGCG	2 cut(s)	365, 530
AciI	CCGC	6 cut(s)	363, 365, 907, 1136, 1181, 1234
AclWI	GGATC	5 cut(s)	58, 71, 416, 1214, 1227
AcoI	YGGCCR	3 cut(s)	502, 597, 1112
AcuI	CTGAAG	1 cut(s)	457
AcvI	CACGTG	2 cut(s)	1177, 1278
AfaI	GTAC	3 cut(s)	660, 755, 1107
AfiI	CCNNNNNNNGG	3 cut(s)	500, 631, 1110
AflIII	ACRYGT	1 cut(s)	1174
AgsI	TTSAA	8 cut(s)	206, 274, 283, 309, 316, 1037, 1260, 1312
AluBI	AGCT	5 cut(s)	181, 538, 644, 977, 1156
AluI	AGCT	5 cut(s)	181, 538, 644, 977, 1156
Alw26I	GTCTC	4 cut(s)	466, 547, 807, 1137
AlwI	GGATC	5 cut(s)	58, 71, 416, 1214, 1227
Ama87I	CYCGRG	1 cut(s)	1004
AoxI	GGCC	4 cut(s)	502, 597, 1112, 1236
ApaI	GGGCCC	1 cut(s)	1240
AseI	ATTAAT	1 cut(s)	483
AspS9I	GGNCC	2 cut(s)	1236, 1237
AsuHPI	GGTGA	4 cut(s)	753, 754, 932, 1075
AvaI	CYCGRG	1 cut(s)	1004
BaeGI	GKGCMC	2 cut(s)	1015, 1240
BaeI	ACNNNNGTAYC	2 cut(s)	737, 770
BalI	TGGCCA	1 cut(s)	504
BamHI	GGATCC	2 cut(s)	63, 1219
BanI	GGYRCC	1 cut(s)	1012
BanII	GRGCYC	2 cut(s)	1025, 1240
BauI	CACGAG	1 cut(s)	192
BbrPI	CACGTG	2 cut(s)	1177, 1278
BbsI	GAAGAC	1 cut(s)	583
BccI	CCATC	3 cut(s)	647, 723, 835
BceAI	ACGGC	3 cut(s)	612, 959, 1075
BclI	TGATCA	3 cut(s)	118, 220, 583
BcoDI	GTCTC	4 cut(s)	466, 547, 807, 1137
BfaI	CTAG	1 cut(s)	1157
BfmI	CTRYAG	1 cut(s)	877
BglII	AGATCT	1 cut(s)	131
BisI	GCNGC	2 cut(s)	363, 1182
BlsI	GCNGC	2 cut(s)	364, 1183
BmeT110I	CYCGRG	1 cut(s)	1004
BmgT120I	GGNCC	2 cut(s)	1236, 1237
BmiI	GGNNCC	6 cut(s)	65, 566, 1014, 1022, 1221, 1238
BmsI	GCATC	3 cut(s)	163, 332, 1261
BpiI	GAAGAC	1 cut(s)	583
Bpu10I	CCTNAGC	1 cut(s)	177
BsaAI	YACGTR	2 cut(s)	1177, 1278
BsaBI	GATNNNNATC	1 cut(s)	123
BsaJI	CCNNGG	4 cut(s)	363, 630, 832, 1016
BsaWI	WCCGGW	4 cut(s)	763, 796, 924, 1060
BsaXI	ACNNNNNCTCC	6 cut(s)	901, 931, 1208, 1238, 1283, 1313
Bsc4I	CCNNNNNNNGG	3 cut(s)	500, 631, 1110
Bse118I	RCCGGY	1 cut(s)	956
Bse1I	ACTGG	3 cut(s)	329, 573, 964
Bse8I	GATNNNNATC	1 cut(s)	123
BseDI	CCNNGG	4 cut(s)	363, 630, 832, 1016
BseGI	GGATG	2 cut(s)	715, 850
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	3 cut(s)	500, 631, 1110
BseMII	CTCAG	1 cut(s)	406
BseNI	ACTGG	3 cut(s)	329, 573, 964
BseSI	GKGCMC	2 cut(s)	1015, 1240
Bsh1236I	CGCG	2 cut(s)	365, 530
BshFI	GGCC	4 cut(s)	504, 599, 1114, 1238
BshNI	GGYRCC	1 cut(s)	1012
BsiHKCI	CYCGRG	1 cut(s)	1004
BsiSI	CCGG	6 cut(s)	764, 797, 925, 957, 1061, 1115
BsiWI	CGTACG	1 cut(s)	1105
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	3 cut(s)	500, 631, 1110
BsmAI	GTCTC	4 cut(s)	466, 547, 807, 1137
BsmBI	CGTCTC	2 cut(s)	547, 1137
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	4 cut(s)	504, 599, 1114, 1238
BsoBI	CYCGRG	1 cut(s)	1004
Bsp120I	GGGCCC	1 cut(s)	1236
Bsp1286I	GDGCHC	3 cut(s)	1015, 1025, 1240
Bsp143I	GATC	9 cut(s)	63, 118, 124, 131, 220, 421, 512, 583, 1219
Bsp19I	CCATGG	1 cut(s)	630
BspACI	CCGC	6 cut(s)	363, 365, 907, 1136, 1181, 1234
BspANI	GGCC	4 cut(s)	504, 599, 1114, 1238
BspCNI	CTCAG	1 cut(s)	405
BspFNI	CGCG	2 cut(s)	365, 530
BspLI	GGNNCC	6 cut(s)	65, 566, 1014, 1022, 1221, 1238
BspPI	GGATC	5 cut(s)	58, 71, 416, 1214, 1227
BspT107I	GGYRCC	1 cut(s)	1012
BsrFI	RCCGGY	1 cut(s)	956
BsrI	ACTGG	3 cut(s)	329, 573, 964
BssAI	RCCGGY	1 cut(s)	956
BssECI	CCNNGG	4 cut(s)	363, 630, 832, 1016
BssMI	GATC	9 cut(s)	63, 118, 124, 131, 220, 421, 512, 583, 1219
BssSI	CACGAG	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	630
Bst2BI	CACGAG	1 cut(s)	192
Bst4CI	ACNGT	5 cut(s)	753, 917, 1017, 1105, 1132
BstBAI	YACGTR	2 cut(s)	1177, 1278
BstC8I	GCNNGC	2 cut(s)	884, 1236
BstDEI	CTNAG	2 cut(s)	177, 392
BstDSI	CCRYGG	4 cut(s)	363, 630, 832, 1016
BstEII	GGTNACC	2 cut(s)	920, 959
BstF5I	GGATG	2 cut(s)	715, 850
BstFNI	CGCG	2 cut(s)	365, 530
BstKTI	GATC	9 cut(s)	66, 121, 127, 134, 223, 424, 515, 586, 1222
BstMAI	GTCTC	4 cut(s)	466, 547, 807, 1137
BstMBI	GATC	9 cut(s)	63, 118, 124, 131, 220, 421, 512, 583, 1219
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 371, 474, 879
BstPI	GGTNACC	2 cut(s)	920, 959
BstSFI	CTRYAG	1 cut(s)	877
BstSLI	GKGCMC	2 cut(s)	1015, 1240
BstUI	CGCG	2 cut(s)	365, 530
BstV2I	GAAGAC	1 cut(s)	583
BstX2I	RGATCY	4 cut(s)	63, 131, 421, 1219
BstYI	RGATCY	4 cut(s)	63, 131, 421, 1219
BsuRI	GGCC	4 cut(s)	504, 599, 1114, 1238
BtgI	CCRYGG	4 cut(s)	363, 630, 832, 1016
BtsCI	GGATG	2 cut(s)	715, 850
BtsIMutI	CAGTG	2 cut(s)	580, 871
Cac8I	GCNNGC	2 cut(s)	884, 1236
Cfr10I	RCCGGY	1 cut(s)	956
Cfr13I	GGNCC	2 cut(s)	1236, 1237
Cfr42I	CCGCGG	1 cut(s)	366
CseI	GACGC	2 cut(s)	536, 879
Csp6I	GTAC	3 cut(s)	659, 754, 1106
CviAII	CATG	7 cut(s)	116, 199, 218, 506, 587, 631, 720
CviQI	GTAC	3 cut(s)	659, 754, 1106
DdeI	CTNAG	2 cut(s)	177, 392
DpnI	GATC	9 cut(s)	65, 120, 126, 133, 222, 423, 514, 585, 1221
DpnII	GATC	9 cut(s)	63, 118, 124, 131, 220, 421, 512, 583, 1219
EaeI	YGGCCR	3 cut(s)	502, 597, 1112
EciI	GGCGGA	2 cut(s)	922, 1151
Eco130I	CCWWGG	1 cut(s)	630
Eco24I	GRGCYC	2 cut(s)	1025, 1240
Eco57I	CTGAAG	1 cut(s)	457
Eco72I	CACGTG	2 cut(s)	1177, 1278
Eco88I	CYCGRG	1 cut(s)	1004
Eco91I	GGTNACC	2 cut(s)	920, 959
EcoO109I	RGGNCCY	1 cut(s)	1237
EcoO65I	GGTNACC	2 cut(s)	920, 959
EcoT14I	CCWWGG	1 cut(s)	630
EcoT38I	GRGCYC	2 cut(s)	1025, 1240
ErhI	CCWWGG	1 cut(s)	630
Esp3I	CGTCTC	2 cut(s)	547, 1137
FaeI	CATG	7 cut(s)	119, 202, 221, 509, 590, 634, 723
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	7 cut(s)	115, 198, 217, 505, 586, 630, 719
FauI	CCCGC	1 cut(s)	1227
FbaI	TGATCA	3 cut(s)	118, 220, 583
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	363, 1182
FokI	GGATG	2 cut(s)	702, 837
FriOI	GRGCYC	2 cut(s)	1025, 1240
Fsp4HI	GCNGC	2 cut(s)	363, 1182
FspBI	CTAG	1 cut(s)	1157
GluI	GCNGC	2 cut(s)	363, 1182
HaeIII	GGCC	4 cut(s)	504, 599, 1114, 1238
HapII	CCGG	6 cut(s)	764, 797, 925, 957, 1061, 1115
HgaI	GACGC	2 cut(s)	536, 879
Hin1II	CATG	7 cut(s)	119, 202, 221, 509, 590, 634, 723
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	5 cut(s)	206, 547, 781, 1037, 1081
HpaII	CCGG	6 cut(s)	764, 797, 925, 957, 1061, 1115
HphI	GGTGA	4 cut(s)	753, 754, 932, 1075
Hpy166II	GTNNAC	4 cut(s)	112, 237, 773, 869
Hpy188I	TCNGA	2 cut(s)	583, 970
Hpy188III	TCNNGA	3 cut(s)	122, 544, 1260
Hpy8I	GTNNAC	4 cut(s)	112, 237, 773, 869
Hpy99I	CGWCG	1 cut(s)	1079
HpyAV	CCTTC	6 cut(s)	112, 315, 395, 1107, 1266, 1320
HpyCH4III	ACNGT	5 cut(s)	753, 917, 1017, 1105, 1132
HpyCH4IV	ACGT	7 cut(s)	267, 291, 738, 1108, 1146, 1176, 1277
HpyCH4V	TGCA	4 cut(s)	345, 468, 509, 691
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 371, 474, 879
HpyF3I	CTNAG	2 cut(s)	177, 392
HpySE526I	ACGT	7 cut(s)	267, 291, 738, 1108, 1146, 1176, 1277
Hsp92II	CATG	7 cut(s)	119, 202, 221, 509, 590, 634, 723
Ksp22I	TGATCA	3 cut(s)	118, 220, 583
KspI	CCGCGG	1 cut(s)	366
Kzo9I	GATC	9 cut(s)	63, 118, 124, 131, 220, 421, 512, 583, 1219
LmnI	GCTCC	1 cut(s)	1020
LweI	GCATC	3 cut(s)	163, 332, 1261
MaeI	CTAG	1 cut(s)	1157
MaeII	ACGT	7 cut(s)	267, 291, 738, 1108, 1146, 1176, 1277
MaeIII	GTNAC	5 cut(s)	703, 799, 911, 920, 959
MalI	GATC	9 cut(s)	65, 120, 126, 133, 222, 423, 514, 585, 1221
MboI	GATC	9 cut(s)	63, 118, 124, 131, 220, 421, 512, 583, 1219
MboII	GAAGA	6 cut(s)	33, 126, 149, 431, 433, 583
MflI	RGATCY	4 cut(s)	63, 131, 421, 1219
MhlI	GDGCHC	3 cut(s)	1015, 1025, 1240
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	5 cut(s)	277, 663, 684, 1189, 1307
MluNI	TGGCCA	1 cut(s)	504
MlyI	GAGTC	2 cut(s)	541, 775
MmeI	TCCRAC	2 cut(s)	964, 1129
Mox20I	TGGCCA	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	504
MseI	TTAA	4 cut(s)	45, 483, 711, 1248
Msp20I	TGGCCA	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	6 cut(s)	764, 797, 925, 957, 1061, 1115
MvnI	CGCG	2 cut(s)	365, 530
MwoI	GCNNNNNNNGC	4 cut(s)	194, 371, 474, 879
NcoI	CCATGG	1 cut(s)	630
NdeII	GATC	9 cut(s)	63, 118, 124, 131, 220, 421, 512, 583, 1219
NlaIII	CATG	7 cut(s)	119, 202, 221, 509, 590, 634, 723
NlaIV	GGNNCC	6 cut(s)	65, 566, 1014, 1022, 1221, 1238
NmuCI	GTSAC	1 cut(s)	920
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PfeI	GAWTC	3 cut(s)	206, 1037, 1081
Pfl23II	CGTACG	1 cut(s)	1105
PflMI	CCANNNNNTGG	2 cut(s)	500, 631
PkrI	GCNGC	2 cut(s)	364, 1183
PleI	GAGTC	2 cut(s)	541, 775
PmaCI	CACGTG	2 cut(s)	1177, 1278
PmlI	CACGTG	2 cut(s)	1177, 1278
PpsI	GAGTC	2 cut(s)	541, 775
Ppu21I	YACGTR	2 cut(s)	1177, 1278
PshBI	ATTAAT	1 cut(s)	483
PspCI	CACGTG	2 cut(s)	1177, 1278
PspEI	GGTNACC	2 cut(s)	920, 959
PspLI	CGTACG	1 cut(s)	1105
PspN4I	GGNNCC	6 cut(s)	65, 566, 1014, 1022, 1221, 1238
PspOMI	GGGCCC	1 cut(s)	1236
PspPI	GGNCC	2 cut(s)	1236, 1237
PsuI	RGATCY	4 cut(s)	63, 131, 421, 1219
RsaI	GTAC	3 cut(s)	660, 755, 1107
RsaNI	GTAC	3 cut(s)	659, 754, 1106
SacII	CCGCGG	1 cut(s)	366
SalI	GTCGAC	1 cut(s)	110
SaqAI	TTAA	4 cut(s)	45, 483, 711, 1248
SatI	GCNGC	2 cut(s)	363, 1182
Sau3AI	GATC	9 cut(s)	63, 118, 124, 131, 220, 421, 512, 583, 1219
Sau96I	GGNCC	2 cut(s)	1236, 1237
SchI	GAGTC	2 cut(s)	541, 775
SduI	GDGCHC	3 cut(s)	1015, 1025, 1240
SfaNI	GCATC	3 cut(s)	163, 332, 1261
SfcI	CTRYAG	1 cut(s)	877
Sfr303I	CCGCGG	1 cut(s)	366
SgrBI	CCGCGG	1 cut(s)	366
Sse9I	AATT	5 cut(s)	277, 663, 684, 1189, 1307
SsiI	CCGC	6 cut(s)	363, 365, 907, 1136, 1181, 1234
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	1 cut(s)	1157
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	5 cut(s)	753, 917, 1017, 1105, 1132
TaiI	ACGT	7 cut(s)	270, 294, 741, 1111, 1149, 1179, 1280
TaqI	TCGA	3 cut(s)	111, 399, 545
TasI	AATT	5 cut(s)	277, 663, 684, 1189, 1307
TauI	GCSGC	2 cut(s)	365, 1184
TfiI	GAWTC	3 cut(s)	206, 1037, 1081
Tru1I	TTAA	4 cut(s)	45, 483, 711, 1248
Tru9I	TTAA	4 cut(s)	45, 483, 711, 1248
TscAI	CASTG	2 cut(s)	580, 871
TseFI	GTSAC	1 cut(s)	920
Tsp45I	GTSAC	1 cut(s)	920
TspDTI	ATGAA	2 cut(s)	444, 839
TspGWI	ACGGA	4 cut(s)	414, 431, 821, 1212
TspRI	CASTG	2 cut(s)	580, 871
Van91I	CCANNNNNTGG	2 cut(s)	500, 631
VspI	ATTAAT	1 cut(s)	483
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	1 cut(s)	1157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.