Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0015146

Physical Location & Seq

Genomic Coordinates Reverse (-)

35581734 .. 35584863

Gene Structure 3130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0305400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3003 bp

ATGCATTTGAACCAACCCTTCACCTCTAGGCTGAAAGGAAATGACACTGATAGGCTGGCACTCTTAGCCATCAAAGGCAACATACAGCATGATCCCAACCGAGTCCTGAGCTCCTGGAATAACTCCATTCACTTCTGCTTGTGGCACGGTGTCACTTGCAGTTCAAGGCATCGTCAGAGAGTCACCATTCTGGACCTCAACTCCCAAGGCCTGGCTGGCTCCATATCCCCACACGTAGGAAATCTGAGCTTTCTAAGGGAACTTTACCTCTATAACAATAGCTTCACTCAAGAAATTCCTCCACAAATTGGGCGTTTGCGCAGGTTACAGGTACTAATTCTTGAGAATAACTCATTTACTGGTCTTATTCCTGCCAAGATATCCAATTGCTTCGACCTCACATCTCTCTCTTTCAGTCGCAACAAGCTGGTGGGTGAAATTCCTTCCGATCTTGGTTTTTTGTCTAAGCTTCAATTGCTTAGTTTACAATTCAATAACTTAACGGGAGAAATTCCTCCTTCTTTGGGGAACCTTTCATCTCTTACACAATTGTCTATAATTGTTAACAACTTGGTGGGGAGCATCCCTAGTTCTCTAGGCCAATTGAAAATGTTAACCTTTCTTTCTTTGGAAGGAAATAAGTTGTCTGGTACCATCCCTCCTTCCATTTACAACCTATCTGCAATTGATACTTTTTCTGTATCAAGAAACCAAATCCATGGGAGCATTCCCTCACACTTGAGCACTGCGTTTCCAAACCTCAAGGTCTTTCAAATTTGGGATAATGCCTTTACTGGGGCTATTCCTTTGTCGATATCCAATGCAACGAGTCTAGAGACGTTCCACGTTGGAAGTAACAGCCTGACAGGACAAGTGCCCAGTTTGCGAAATCTTCGTAACCTCACAATATTCTCTGTCATGTATAATCATCTTGGAAGTGGTAAACAAGGGGACTTGAGCTTTGTCTCAGAGTTGGTGAATGCCACACAGTTAGGAGATTTGATGTTAGGCTCCAATAATTTCGGAGGGACATTGCCCACATCAATATCCAATCTCTCAACCAGTCTTGAGATACTTTTTTTATCCAAAAACCAAATACATGGAAGCATCCCAACTGGTTTAGGAAGTCTTGTGAATTTGCAGTCACTCTATTTGGGGGAAAACTTCTTCACGGGTAGCATCCCCGCCGACATTGGGAAGCTTTCAACGCTTCAGAAATTGTCTCTTTGGAACTGCCAATTATCAGGAAGCATTCCATCTTCTCTTGGAAATTTAACCATGTTATTCGGTCTTGACTTGCGGGCAAATAATCTTAGTGGCAGCATCCCTTCGAGTCTAGGGAAATGCCACGGGATTTTGCAACTGCAGCTCTCTCAAAATCACCTTAATGGTACAATACCCCAGCAACTACTTATTGGCCTCCTTTCCTTGTCAATTTCTCTGGACTTGTCTAGAAACCACTTTGTTGGTTCCCTTTCTGTGCAGATCGGCAAGTTGAAGAATCTTGGTATACTTGACGTTTCTGAGAACATGTTTTCGGGACAGCTTCCTAATAGCATCGGTGATTGTCAGAGTTTAGAAGTCCTACAGTTGCAAGGAAATTTCTTCGAGGGGCTCATTCCATCATCTATGAAGAACTTGAGAGGCCTTCAATATTTAGACCTTTCCCGAAACAATTTTTCAGGACATATTCCACAGTTCTTCGAGAGCTTCGGAAACTTGGAGAATCTGAACCTATCCTTCAATCACTTATGGGGAGAAGTACCAATTGAAGGTGTTTTTAAAAATGCAAGTGCAACATCAGTTGTTGGAAACACCGCATTGTGCGGAGGTATTGCAGATCTTCGACTTCCTGTGTGCAAATCTGAAGTGTCTAAAGCAAGAGGTTTGTCTCATACAATAAAAATAGCTATGTCTTTAGTATCCGGGTTTACTCTTTTGGTAATTGCTATGGTGCTATCCTTTTTACTTCATCGTAAGAAAAGGAAAGCAATTAAGTTGAGCACTTTGGGGAACTCTATTTTGCAAGTCTCGTATGCTATGCTCCTAAAAGCAACTGAAGGGTTTTCTTCCACTAATTTGATTGGTGAGGGTGGTTTTGGTTCTGTGTACAAAGGAATTCTCGATGGTGATAGAGTTGTCGCTGTAAAGGTGCTTAACATGTTACACAGGGGAGCTTCAAAGAGTTTCATAGCTGAATGTGAAGCACTGAGAAATATCAGGCATCGAAATCTGGTAAAGATTATAACTGCATGTTCAAGTGTTGATTTTAATGGAAATGATTTCAAGGCTCTAGTTTATGAATTCATGGAAAATGGGAGCTTAGAAGAGTGGTTGCATCCATCCACTGGAATTGAAACGGTAATAGATGCACCCAAAACTTTAAGTCTTGTCCAGAGGCTCGATATCGCCATTGATGTTGCTTCTGCATTGGATTATCTTCACAATCATTGTGAAACACCAATAGTTCACTGTGATCTCAAACCAAGTAACGTTCTTTTGGACAAAGAGCTGACCGCACATGTTTCTGACTTTGGACTGGTAAGGTTTCTCTCAAAATTAACTGATAACATTTCTGGAAATCAATCAAGCTCCATTGGAATAAGAGGATCGGTTGGTTATGCTGCTCCAGAGTATGGTATGGGAAGTGAGGTGTCAACCTATGGGGATGTGTACAGCTTTGGCATTCTCCTGTTAGAAATGTTTACTGGGAAGAGACCTACTGATCCTATGTTCAGTGACAGCTTGAATCTTCATAACTTTGTGAAGATGGCTCTACCTAAACAAGTTAAGGAGATTGCGGATTCACAACTTGAAGGAGGCATCACCACTGTTGATGAAGCTCGCAAGCAACCAATCACAAGACCACAGAAAATTGAAGAGTGCTTAAAGTTGATATTTGGCATTGGAATAGCATGTTCTGCTGAATTCCCAACAAACCGAAAGGATATAAGTAATGTTGTATCTGAATTGCACACCGTCAGGAACAATCTTCTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

1000

Amino Acids

108.66

Weight (kDa)

8.1

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	15 - 54	1.8e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	62 - 189	5.3e-11	Leucine-rich repeat region
LRR_14	PF23598	323 - 461	5.9e-10	Leucine-rich repeat region
LRR_14	PF23598	483 - 578	2.8e-08	Leucine-rich repeat region
LRR_8	PF13855	525 - 584	2.8e-09	Leucine rich repeat
Pkinase	PF00069	691 - 924	1.7e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	693 - 914	7.5e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28110
fragaria_vesca	FvH4_3g30840
malus_domestica	MD03G1126500.v1.1 MD11G1146800.v1.1
prunus_persica	Prupe.6G110800_v2.0.a1
pyrus_communis	pycom11g12010
rosa_chinensis	RchiOBHm_Chr5g0057051
rosa_laevigata	RLG00000035148
rosa_multiflora	Rmu_sc0009185.1_g000025
rosa_roxburghii	Rroxscaffold_1G00023140
rosa_rugosa	Rorug05G0305300.1 Rorug05G0305400
rosa_samantha	Rh5BG385800 Rh5CG409300 Rh5DG399500
rosa_wichuraiana	Rw5G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2246
Acc16I	TGCGCA	1 cut(s)	320
Acc36I	ACCTGC	1 cut(s)	312
Acc65I	GGTACC	1 cut(s)	650
AccB1I	GGYRCC	1 cut(s)	650
AccB7I	CCANNNNNTGG	4 cut(s)	211, 308, 2348, 2636
AccI	GTMKAC	1 cut(s)	1510
AciI	CCGC	6 cut(s)	1185, 1300, 1818, 1827, 2517, 2801
AclI	AACGTT	1 cut(s)	2493
AclWI	GGATC	3 cut(s)	86, 2617, 2720
AcuI	CTGAAG	3 cut(s)	1196, 1887, 2079
AfaI	GTAC	6 cut(s)	333, 652, 1393, 1764, 2111, 2675
AfiI	CCNNNNNNNGG	9 cut(s)	211, 236, 308, 524, 795, 1194, 1772, 2348, 2636
AflIII	ACRYGT	4 cut(s)	232, 1530, 2160, 2521
AjnI	CCWGG	2 cut(s)	113, 210
Alw21I	GWGCWC	3 cut(s)	113, 746, 2006
Alw26I	GTCTC	6 cut(s)	830, 970, 1227, 1896, 2035, 2710
AlwI	GGATC	3 cut(s)	86, 2617, 2720
AoxI	GGCC	4 cut(s)	208, 598, 1417, 1645
ApeKI	GCWGC	3 cut(s)	1320, 1366, 2624
ArsI	GACNNNNNNTTYG	2 cut(s)	944, 976
Asp718I	GGTACC	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	193
AsuC2I	CCSGG	1 cut(s)	1927
AsuHPI	GGTGA	9 cut(s)	13, 175, 446, 988, 1373, 1574, 2099, 2141, 2818
AvaII	GGWCC	1 cut(s)	193
BaeGI	GKGCMC	1 cut(s)	879
BanI	GGYRCC	1 cut(s)	650
BanII	GRGCYC	2 cut(s)	113, 1617
Bbv12I	GWGCWC	3 cut(s)	113, 746, 2006
BbvI	GCAGC	3 cut(s)	1332, 1378, 2611
BccI	CCATC	7 cut(s)	77, 662, 1264, 1630, 2120, 2350, 2764
BciT130I	CCWGG	2 cut(s)	115, 212
BciVI	GTATCC	1 cut(s)	1933
BcnI	CCSGG	1 cut(s)	1927
BcoDI	GTCTC	6 cut(s)	830, 970, 1227, 1896, 2035, 2710
BfaI	CTAG	8 cut(s)	27, 588, 596, 833, 1337, 1452, 2294, 3001
BfmI	CTRYAG	2 cut(s)	1364, 1586
BfuAI	ACCTGC	1 cut(s)	312
BfuI	GTATCC	1 cut(s)	1933
BglI	GCCNNNNNGGC	1 cut(s)	216
BglII	AGATCT	1 cut(s)	1840
BisI	GCNGC	3 cut(s)	1321, 1367, 2625
BlsI	GCNGC	3 cut(s)	1322, 1368, 2626
Bme1390I	CCNGG	3 cut(s)	115, 212, 1927
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	5 cut(s)	220, 530, 652, 1012, 1471
BmrFI	CCNGG	3 cut(s)	115, 212, 1927
BmrI	ACTGGG	3 cut(s)	804, 873, 2718
BmuI	ACTGGG	3 cut(s)	804, 873, 2718
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpmI	CTGGAG	1 cut(s)	2613
Bpu10I	CCTNAGC	1 cut(s)	107
BpuEI	CTTGAG	7 cut(s)	273, 362, 746, 760, 976, 1088, 1660
BpuMI	CCSGG	1 cut(s)	1927
BsaAI	YACGTR	1 cut(s)	235
BsaI	GGTCTC	1 cut(s)	2710
BsaJI	CCNNGG	3 cut(s)	205, 718, 1348
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 643, 673
Bsc4I	CCNNNNNNNGG	9 cut(s)	211, 236, 308, 524, 795, 1194, 1772, 2348, 2636
Bse1I	ACTGG	8 cut(s)	364, 799, 879, 1062, 1120, 2353, 2544, 2713
Bse3DI	GCAATG	1 cut(s)	1031
BseBI	CCWGG	2 cut(s)	115, 212
BseDI	CCNNGG	3 cut(s)	205, 718, 1348
BseGI	GGATG	8 cut(s)	582, 654, 1107, 1179, 1323, 2338, 2342, 2674
BseLI	CCNNNNNNNGG	9 cut(s)	211, 236, 308, 524, 795, 1194, 1772, 2348, 2636
BseMI	GCAATG	1 cut(s)	1031
BseMII	CTCAG	5 cut(s)	98, 236, 981, 1515, 2201
BseNI	ACTGG	8 cut(s)	364, 799, 879, 1062, 1120, 2353, 2544, 2713
BseSI	GKGCMC	1 cut(s)	879
BseXI	GCAGC	3 cut(s)	1332, 1378, 2611
BseYI	CCCAGC	1 cut(s)	1401
BsgI	GTGCAG	1 cut(s)	1502
BshFI	GGCC	4 cut(s)	210, 600, 1419, 1647
BshNI	GGYRCC	1 cut(s)	650
BsiHKAI	GWGCWC	3 cut(s)	113, 746, 2006
BsiSI	CCGG	1 cut(s)	1926
BslFI	GGGAC	3 cut(s)	965, 1042, 1554
BslI	CCNNNNNNNGG	9 cut(s)	211, 236, 308, 524, 795, 1194, 1772, 2348, 2636
BsmAI	GTCTC	6 cut(s)	830, 970, 1227, 1896, 2035, 2710
BsmBI	CGTCTC	1 cut(s)	830
BsmFI	GGGAC	3 cut(s)	965, 1042, 1554
BsmI	GAATGC	4 cut(s)	726, 985, 1251, 2685
BsnI	GGCC	4 cut(s)	210, 600, 1419, 1647
Bso31I	GGTCTC	1 cut(s)	2710
Bsp1286I	GDGCHC	5 cut(s)	113, 746, 879, 1617, 2006
Bsp1407I	TGTACA	2 cut(s)	2109, 2673
Bsp143I	GATC	7 cut(s)	91, 448, 1485, 1840, 2476, 2609, 2725
Bsp19I	CCATGG	1 cut(s)	718
BspACI	CCGC	6 cut(s)	1185, 1300, 1818, 1827, 2517, 2801
BspANI	GGCC	4 cut(s)	210, 600, 1419, 1647
BspCNI	CTCAG	5 cut(s)	99, 237, 980, 1516, 2202
BspLI	GGNNCC	5 cut(s)	220, 530, 652, 1012, 1471
BspMAI	CTGCAG	1 cut(s)	1368
BspMI	ACCTGC	1 cut(s)	312
BspPI	GGATC	3 cut(s)	86, 2617, 2720
BspT107I	GGYRCC	1 cut(s)	650
BspTNI	GGTCTC	1 cut(s)	2710
BsrDI	GCAATG	1 cut(s)	1031
BsrGI	TGTACA	2 cut(s)	2109, 2673
BsrI	ACTGG	8 cut(s)	364, 799, 879, 1062, 1120, 2353, 2544, 2713
BssECI	CCNNGG	3 cut(s)	205, 718, 1348
BssMI	GATC	7 cut(s)	91, 448, 1485, 1840, 2476, 2609, 2725
BssNAI	GTATAC	1 cut(s)	1511
BssT1I	CCWWGG	2 cut(s)	205, 718
Bst1107I	GTATAC	1 cut(s)	1511
Bst2UI	CCWGG	2 cut(s)	115, 212
Bst4CI	ACNGT	8 cut(s)	149, 990, 1590, 1698, 2362, 2474, 2833, 2980
Bst6I	CTCTTC	3 cut(s)	2322, 2708, 2874
BstAPI	GCANNNNNTGC	1 cut(s)	2921
BstAUI	TGTACA	2 cut(s)	2109, 2673
BstBAI	YACGTR	1 cut(s)	235
BstC8I	GCNNGC	5 cut(s)	57, 217, 1302, 2845, 2849
BstDSI	CCRYGG	2 cut(s)	718, 1348
BstF5I	GGATG	8 cut(s)	582, 654, 1107, 1179, 1323, 2338, 2342, 2674
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	7 cut(s)	94, 451, 1488, 1843, 2479, 2612, 2728
BstMAI	GTCTC	6 cut(s)	830, 970, 1227, 1896, 2035, 2710
BstMBI	GATC	7 cut(s)	91, 448, 1485, 1840, 2476, 2609, 2725
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 216, 475, 883, 1207, 1366, 2921
BstNI	CCWGG	2 cut(s)	115, 212
BstNSI	RCATGY	5 cut(s)	1534, 2164, 2256, 2525, 2919
BstSCI	CCNGG	3 cut(s)	113, 210, 1925
BstSFI	CTRYAG	2 cut(s)	1364, 1586
BstSLI	GKGCMC	1 cut(s)	879
BstV1I	GCAGC	3 cut(s)	1332, 1378, 2611
BstX2I	RGATCY	1 cut(s)	1840
BstXI	CCANNNNNNTGG	3 cut(s)	719, 1100, 1466
BstYI	RGATCY	1 cut(s)	1840
BstZ17I	GTATAC	1 cut(s)	1511
BsuI	GTATCC	1 cut(s)	1933
BsuRI	GGCC	4 cut(s)	210, 600, 1419, 1647
BtgI	CCRYGG	2 cut(s)	718, 1348
BtsCI	GGATG	8 cut(s)	582, 654, 1107, 1179, 1323, 2338, 2342, 2674
BtsI	GCAGTG	1 cut(s)	744
BtsIMutI	CAGTG	7 cut(s)	45, 744, 2207, 2346, 2470, 2743, 2829
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	5 cut(s)	57, 217, 1302, 2845, 2849
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	193
Csp6I	GTAC	6 cut(s)	332, 651, 1392, 1763, 2110, 2674
CspCI	CAANNNNNGTGG	2 cut(s)	2335, 2370
CviQI	GTAC	6 cut(s)	332, 651, 1392, 1763, 2110, 2674
DpnI	GATC	7 cut(s)	93, 450, 1487, 1842, 2478, 2611, 2727
DpnII	GATC	7 cut(s)	91, 448, 1485, 1840, 2476, 2609, 2725
DraI	TTTAAA	1 cut(s)	1783
Eam1104I	CTCTTC	3 cut(s)	2322, 2708, 2874
EarI	CTCTTC	3 cut(s)	2322, 2708, 2874
Ecl136II	GAGCTC	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	205, 718
Eco147I	AGGCCT	2 cut(s)	210, 1647
Eco24I	GRGCYC	2 cut(s)	113, 1617
Eco31I	GGTCTC	1 cut(s)	2710
Eco32I	GATATC	3 cut(s)	381, 816, 2407
Eco47I	GGWCC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	111
Eco57I	CTGAAG	3 cut(s)	1196, 1887, 2079
EcoICRI	GAGCTC	1 cut(s)	111
EcoRI	GAATTC	3 cut(s)	2118, 2303, 2927
EcoRII	CCWGG	2 cut(s)	113, 210
EcoRV	GATATC	3 cut(s)	381, 816, 2407
EcoT14I	CCWWGG	2 cut(s)	205, 718
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	113, 1617
ErhI	CCWWGG	2 cut(s)	205, 718
Esp3I	CGTCTC	1 cut(s)	830
FaqI	GGGAC	3 cut(s)	965, 1042, 1554
FauI	CCCGC	2 cut(s)	1192, 1293
FblI	GTMKAC	1 cut(s)	1510
Fnu4HI	GCNGC	3 cut(s)	1321, 1367, 2625
FokI	GGATG	8 cut(s)	569, 641, 1094, 1166, 1310, 2325, 2329, 2681
FriOI	GRGCYC	2 cut(s)	113, 1617
Fsp4HI	GCNGC	3 cut(s)	1321, 1367, 2625
FspBI	CTAG	8 cut(s)	27, 588, 596, 833, 1337, 1452, 2294, 3001
FspI	TGCGCA	1 cut(s)	320
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	3 cut(s)	1321, 1367, 2625
GsaI	CCCAGC	1 cut(s)	1405
GsuI	CTGGAG	1 cut(s)	2613
HaeIII	GGCC	4 cut(s)	210, 600, 1419, 1647
HapII	CCGG	1 cut(s)	1926
HhaI	GCGC	1 cut(s)	321
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	3 cut(s)	565, 615, 2658
HindII	GTYRAC	3 cut(s)	565, 615, 2658
HindIII	AAGCTT	2 cut(s)	467, 1199
HinfI	GANTC	8 cut(s)	102, 180, 829, 1333, 1501, 1726, 2749, 2804
HpaI	GTTAAC	2 cut(s)	565, 615
HpaII	CCGG	1 cut(s)	1926
HphI	GGTGA	9 cut(s)	13, 175, 446, 988, 1373, 1574, 2099, 2141, 2818
HpyCH4III	ACNGT	8 cut(s)	149, 990, 1590, 1698, 2362, 2474, 2833, 2980
HpyCH4IV	ACGT	5 cut(s)	234, 839, 846, 1518, 2493
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 216, 475, 883, 1207, 1366, 2921
HpySE526I	ACGT	5 cut(s)	234, 839, 846, 1518, 2493
HspAI	GCGC	1 cut(s)	319
KpnI	GGTACC	1 cut(s)	654
KspAI	GTTAAC	2 cut(s)	565, 615
Kzo9I	GATC	7 cut(s)	91, 448, 1485, 1840, 2476, 2609, 2725
Lsp1109I	GCAGC	3 cut(s)	1332, 1378, 2611
MaeI	CTAG	8 cut(s)	27, 588, 596, 833, 1337, 1452, 2294, 3001
MaeII	ACGT	5 cut(s)	234, 839, 846, 1518, 2493
MaeIII	GTNAC	9 cut(s)	151, 181, 324, 854, 896, 1143, 2163, 2489, 2738
MalI	GATC	7 cut(s)	93, 450, 1487, 1842, 2478, 2611, 2727
MboI	GATC	7 cut(s)	91, 448, 1485, 1840, 2476, 2609, 2725
MfeI	CAATTG	6 cut(s)	385, 473, 548, 602, 684, 1767
MflI	RGATCY	1 cut(s)	1840
MhlI	GDGCHC	5 cut(s)	113, 746, 879, 1617, 2006
MlyI	GAGTC	4 cut(s)	111, 189, 838, 1342
MmeI	TCCRAC	2 cut(s)	829, 1789
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	1386
MspI	CCGG	1 cut(s)	1926
MspR9I	CCNGG	3 cut(s)	115, 212, 1927
MunI	CAATTG	6 cut(s)	385, 473, 548, 602, 684, 1767
Mva1269I	GAATGC	4 cut(s)	726, 985, 1251, 2685
MvaI	CCWGG	2 cut(s)	115, 212
MwoI	GCNNNNNNNGC	7 cut(s)	65, 216, 475, 883, 1207, 1366, 2921
NciI	CCSGG	1 cut(s)	1927
NcoI	CCATGG	1 cut(s)	718
NdeII	GATC	7 cut(s)	91, 448, 1485, 1840, 2476, 2609, 2725
NlaIV	GGNNCC	5 cut(s)	220, 530, 652, 1012, 1471
NmuCI	GTSAC	4 cut(s)	151, 181, 1143, 2738
NsbI	TGCGCA	1 cut(s)	320
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	5 cut(s)	1534, 2164, 2256, 2525, 2919
PceI	AGGCCT	2 cut(s)	210, 1647
PciI	ACATGT	3 cut(s)	1530, 2160, 2521
PctI	GAATGC	4 cut(s)	726, 985, 1251, 2685
PfeI	GAWTC	4 cut(s)	1501, 1726, 2749, 2804
PflMI	CCANNNNNTGG	4 cut(s)	211, 308, 2348, 2636
PfoI	TCCNGGA	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	1322, 1368, 2626
PleI	GAGTC	4 cut(s)	110, 188, 837, 1341
PpsI	GAGTC	4 cut(s)	110, 188, 837, 1341
Ppu21I	YACGTR	1 cut(s)	235
PscI	ACATGT	3 cut(s)	1530, 2160, 2521
PsiI	TTATAA	1 cut(s)	2246
Psp124BI	GAGCTC	1 cut(s)	113
Psp1406I	AACGTT	1 cut(s)	2493
Psp6I	CCWGG	2 cut(s)	113, 210
PspFI	CCCAGC	1 cut(s)	1401
PspGI	CCWGG	2 cut(s)	113, 210
PspN4I	GGNNCC	5 cut(s)	220, 530, 652, 1012, 1471
PspPI	GGNCC	1 cut(s)	193
PstI	CTGCAG	1 cut(s)	1368
PsuI	RGATCY	1 cut(s)	1840
RsaI	GTAC	6 cut(s)	333, 652, 1393, 1764, 2111, 2675
RsaNI	GTAC	6 cut(s)	332, 651, 1392, 1763, 2110, 2674
RseI	CAYNNNNRTG	1 cut(s)	1386
SacI	GAGCTC	1 cut(s)	113
SatI	GCNGC	3 cut(s)	1321, 1367, 2625
Sau3AI	GATC	7 cut(s)	91, 448, 1485, 1840, 2476, 2609, 2725
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	4 cut(s)	111, 189, 838, 1342
ScrFI	CCNGG	3 cut(s)	115, 212, 1927
SduI	GDGCHC	5 cut(s)	113, 746, 879, 1617, 2006
SfcI	CTRYAG	2 cut(s)	1364, 1586
SinI	GGWCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	1386
SmlI	CTYRAG	7 cut(s)	288, 341, 739, 761, 955, 1067, 1639
SmoI	CTYRAG	7 cut(s)	288, 341, 739, 761, 955, 1067, 1639
SseBI	AGGCCT	2 cut(s)	210, 1647
SsiI	CCGC	6 cut(s)	1185, 1300, 1818, 1827, 2517, 2801
SspI	AATATT	2 cut(s)	909, 1655
SspMI	CTAG	8 cut(s)	27, 588, 596, 833, 1337, 1452, 2294, 3001
SstI	GAGCTC	1 cut(s)	113
StuI	AGGCCT	2 cut(s)	210, 1647
StyD4I	CCNGG	3 cut(s)	113, 210, 1925
StyI	CCWWGG	2 cut(s)	205, 718
TaaI	ACNGT	8 cut(s)	149, 990, 1590, 1698, 2362, 2474, 2833, 2980
TaiI	ACGT	5 cut(s)	237, 842, 849, 1521, 2496
TaqI	TCGA	9 cut(s)	393, 812, 1331, 1608, 1704, 1846, 2124, 2227, 2403
TaqII	GACCGA	1 cut(s)	1277
TatI	WGTACW	2 cut(s)	2109, 2673
TfiI	GAWTC	4 cut(s)	1501, 1726, 2749, 2804
TscAI	CASTG	7 cut(s)	52, 751, 2214, 2353, 2477, 2743, 2836
TseFI	GTSAC	4 cut(s)	151, 181, 1143, 2738
TseI	GCWGC	3 cut(s)	1320, 1366, 2624
Tsp45I	GTSAC	4 cut(s)	151, 181, 1143, 2738
TspDTI	ATGAA	8 cut(s)	525, 1646, 1961, 2179, 2296, 2316, 2744, 2853
TspRI	CASTG	7 cut(s)	52, 751, 2214, 2353, 2477, 2743, 2836
Van91I	CCANNNNNTGG	4 cut(s)	211, 308, 2348, 2636
VpaK11BI	GGWCC	1 cut(s)	193
XbaI	TCTAGA	2 cut(s)	832, 1451
XceI	RCATGY	5 cut(s)	1534, 2164, 2256, 2525, 2919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	1510
XspI	CTAG	8 cut(s)	27, 588, 596, 833, 1337, 1452, 2294, 3001
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.