AT2G29640

JOSEPHIN-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015189
Physical Location & Seq
Forward (+)
12671206 .. 12673334
2129 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29640.1

Sequence Viewer

Length: 1083 bp
ATGGCGGATTCCGAATCTAAAATCTATCACGAACGACAACGATTACAATTTTGCCTCTTGCACTGCCTCAACAATCTATTTCAGGACAAAGACGCATTCACTAAAGAAAGCTTGAACTCAATCGCAGAGAAGCTCGAGACCAATGATCCAAACAAAGAAACATGGACACCTCTCTCTTTCGTCCTCAAGCCTCACCACAATACAATCACTGGTAACTACGACGTAAACGTGATGATTACAGCTCTTGAAGGAAAAGGCAAGAGTGTTGTTTGGCATGATAAGCGTATTGGAGCTTCTTCGATTGATCTTGATGATGCAGATACTTTAATGGGTATTGTGTTGAATGTTCCTGTTAAGAGATATGGTGGACTTTGGAGAAGTAGGCATTGGGTTGTTGTTAGAAAAATCAATGGTGTTTGGTATAATTTGGATAGTGATCTCGTTGTGCCGCAGCTGTTTAGAGATGATGATGAAGTTAGAGGGTTCTTGGATCAAAATCTGAGTTTAGACGTGATTGGATTAATTTGGAACCTGCCATATAATGCCAATCAACTTCCATTAGCATCTAACTACCGAGTAGTCATCACTCATTGGTCTGATCTCAATGGAATGTTCTCACATGTAACAAATTACCCTCTAGACTTTGATGTCTATCCTCAAGTCTCAAGTAAGGTATCTGCAATATATAAAGCTACAGGAACAAAACGGTTCAATGCAAACACTAGACCAGTAACTCCTGGTAAGCAATCCTCAGTCAAGGGACCATATTATAAGAATCCGGGATGCACAACAAGCTGTGGTTTGAGGCTACCGAGGAAAACGGAATGCACAGCAGCAAGACTGATCAAAGATCTCAGCTGTAAATTCGTTATGGGCTTACGTCTGGTGGTGATGAGGAAGAAGAAGAAGAAGAGATCTCCACCATTGAAGAAGGCTTCTTCTTCTGGGATATCTCAGCCTTCAGTCATCTCTGTCGTTAATGATAATAATCACAGATCAGCGGCAATAGAAGACTGCATACAATTCATAAACTCCTCTTCCTCCTTCACAAGATCAAATTCTACCTGTGGCAGTAAATCTTAA

Protein Analysis

360

Amino Acids

40.49

Weight (kDa)

9.42

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Josephin PF02099 13 - 169 3.9e-36 Josephin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29640
fragaria_vesca FvH4_3g38250 FvH4_3g38250
malus_domestica MD11G1079900.v1.1
prunus_persica Prupe.6G060500_v2.0.a1
pyrus_communis pycom11g06740
rosa_chinensis RchiOBHm_Chr5g0068731
rosa_laevigata RLG00000036006
rosa_multiflora Rmu_sc0000376.1_g000026
rosa_roxburghii Rroxscaffold_1G00012090
rosa_rugosa Rorug05G0392700
rosa_samantha Rh5AG450200 Rh5BG468600 Rh5CG490800 Rh5DG482100
rosa_wichuraiana Rw5G042040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 771
AasI GACNNNNNNGTC 1 cut(s) 647
Acc36I ACCTGC 1 cut(s) 540
AciI CCGC 3 cut(s) 5, 449, 1001
AclWI GGATC 2 cut(s) 140, 498
AcsI RAATTY 2 cut(s) 863, 1057
AcuI CTGAAG 1 cut(s) 945
AflIII ACRYGT 1 cut(s) 619
AgsI TTSAA 5 cut(s) 115, 248, 343, 712, 928
AjiI CACGTC 1 cut(s) 511
AjnI CCWGG 1 cut(s) 736
AjuI GAANNNNNNNTTGG 2 cut(s) 370, 402
AluBI AGCT 8 cut(s) 111, 133, 242, 293, 454, 692, 795, 858
AluI AGCT 8 cut(s) 111, 133, 242, 293, 454, 692, 795, 858
Alw26I GTCTC 2 cut(s) 131, 667
AlwI GGATC 2 cut(s) 140, 498
Ama87I CYCGRG 1 cut(s) 134
ApeKI GCWGC 2 cut(s) 451, 833
ApoI RAATTY 2 cut(s) 863, 1057
AseI ATTAAT 1 cut(s) 521
AspS9I GGNCC 1 cut(s) 761
AsuC2I CCSGG 1 cut(s) 780
AsuHPI GGTGA 2 cut(s) 185, 901
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 1 cut(s) 761
BarI GAAGNNNNNNTAC 4 cut(s) 277, 309, 1002, 1034
BbsI GAAGAC 1 cut(s) 1017
BbvI GCAGC 2 cut(s) 463, 845
BciT130I CCWGG 1 cut(s) 738
BclI TGATCA 1 cut(s) 843
BcnI CCSGG 1 cut(s) 780
BcoDI GTCTC 2 cut(s) 131, 667
BfaI CTAG 2 cut(s) 638, 723
BfmI CTRYAG 1 cut(s) 693
BfuAI ACCTGC 1 cut(s) 540
BglII AGATCT 2 cut(s) 850, 914
BisI GCNGC 4 cut(s) 449, 452, 834, 1002
BlsI GCNGC 4 cut(s) 450, 453, 835, 1003
Bme1390I CCNGG 2 cut(s) 738, 780
Bme18I GGWCC 1 cut(s) 761
BmeT110I CYCGRG 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 761
BmiI GGNNCC 2 cut(s) 530, 762
BmrFI CCNGG 2 cut(s) 738, 780
BmsI GCATC 3 cut(s) 304, 572, 773
BpiI GAAGAC 1 cut(s) 1017
BpuEI CTTGAG 3 cut(s) 170, 642, 649
BpuMI CCSGG 1 cut(s) 780
BsaBI GATNNNNATC 4 cut(s) 435, 495, 651, 987
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 812
Bse1I ACTGG 2 cut(s) 214, 728
Bse8I GATNNNNATC 4 cut(s) 435, 495, 651, 987
BseBI CCWGG 1 cut(s) 738
BseDI CCNNGG 1 cut(s) 812
BseGI GGATG 1 cut(s) 788
BseJI GATNNNNATC 4 cut(s) 435, 495, 651, 987
BseMII CTCAG 4 cut(s) 491, 765, 868, 968
BseNI ACTGG 2 cut(s) 214, 728
BseRI GAGGAG 1 cut(s) 1024
BseXI GCAGC 2 cut(s) 463, 845
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 1 cut(s) 779
BslFI GGGAC 1 cut(s) 774
BsmAI GTCTC 2 cut(s) 131, 667
BsmFI GGGAC 1 cut(s) 774
BsmI GAATGC 2 cut(s) 95, 830
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 134
BspACI CCGC 3 cut(s) 5, 449, 1001
BspCNI CTCAG 4 cut(s) 492, 764, 867, 967
BspLI GGNNCC 2 cut(s) 530, 762
BspMI ACCTGC 1 cut(s) 540
BspPI GGATC 2 cut(s) 140, 498
BspTNI GGTCTC 1 cut(s) 131
BsrI ACTGG 2 cut(s) 214, 728
BssECI CCNNGG 1 cut(s) 812
Bst2UI CCWGG 1 cut(s) 738
Bst4CI ACNGT 1 cut(s) 708
Bst6I CTCTTC 2 cut(s) 905, 1042
BstDEI CTNAG 4 cut(s) 500, 751, 854, 954
BstF5I GGATG 1 cut(s) 788
BstMAI GTCTC 2 cut(s) 131, 667
BstMWI GCNNNNNNNGC 2 cut(s) 280, 792
BstNI CCWGG 1 cut(s) 738
BstNSI RCATGY 1 cut(s) 623
BstSCI CCNGG 2 cut(s) 736, 778
BstSFI CTRYAG 1 cut(s) 693
BstV1I GCAGC 2 cut(s) 463, 845
BstV2I GAAGAC 1 cut(s) 1017
BstX2I RGATCY 2 cut(s) 850, 914
BstYI RGATCY 2 cut(s) 850, 914
BtrI CACGTC 1 cut(s) 511
BtsCI GGATG 1 cut(s) 788
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 2 cut(s) 61, 207
BveI ACCTGC 1 cut(s) 540
Cfr13I GGNCC 1 cut(s) 761
CseI GACGC 1 cut(s) 101
CviAII CATG 3 cut(s) 162, 275, 620
DdeI CTNAG 4 cut(s) 500, 751, 854, 954
DrdI GACNNNNNNGTC 1 cut(s) 647
DseDI GACNNNNNNGTC 1 cut(s) 647
Eam1104I CTCTTC 2 cut(s) 905, 1042
EarI CTCTTC 2 cut(s) 905, 1042
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 131
Eco32I GATATC 1 cut(s) 951
Eco47I GGWCC 1 cut(s) 761
Eco57I CTGAAG 1 cut(s) 945
Eco88I CYCGRG 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 736
EcoRV GATATC 1 cut(s) 951
FaeI CATG 3 cut(s) 165, 278, 623
FaqI GGGAC 1 cut(s) 774
FatI CATG 3 cut(s) 161, 274, 619
FbaI TGATCA 1 cut(s) 843
Fnu4HI GCNGC 4 cut(s) 449, 452, 834, 1002
FokI GGATG 1 cut(s) 795
Fsp4HI GCNGC 4 cut(s) 449, 452, 834, 1002
FspBI CTAG 2 cut(s) 638, 723
GluI GCNGC 4 cut(s) 449, 452, 834, 1002
HapII CCGG 1 cut(s) 779
HgaI GACGC 1 cut(s) 101
Hin1II CATG 3 cut(s) 165, 278, 623
HindIII AAGCTT 1 cut(s) 109
HinfI GANTC 3 cut(s) 8, 14, 775
HpaII CCGG 1 cut(s) 779
HphI GGTGA 2 cut(s) 185, 901
Hpy166II GTNNAC 2 cut(s) 226, 368
Hpy188I TCNGA 3 cut(s) 13, 501, 598
Hpy188III TCNNGA 6 cut(s) 29, 83, 136, 245, 308, 638
Hpy8I GTNNAC 2 cut(s) 226, 368
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 4 cut(s) 242, 925, 969, 1054
HpyCH4III ACNGT 1 cut(s) 708
HpyCH4IV ACGT 4 cut(s) 222, 228, 510, 880
HpyCH4V TGCA 7 cut(s) 61, 317, 680, 716, 786, 828, 1017
HpyF10VI GCNNNNNNNGC 2 cut(s) 280, 792
HpyF3I CTNAG 4 cut(s) 500, 751, 854, 954
HpySE526I ACGT 4 cut(s) 222, 228, 510, 880
Hsp92II CATG 3 cut(s) 165, 278, 623
Ksp22I TGATCA 1 cut(s) 843
LmnI GCTCC 1 cut(s) 290
Lsp1109I GCAGC 2 cut(s) 463, 845
LweI GCATC 3 cut(s) 304, 572, 773
MaeI CTAG 2 cut(s) 638, 723
MaeII ACGT 4 cut(s) 222, 228, 510, 880
MaeIII GTNAC 3 cut(s) 212, 622, 730
MflI RGATCY 2 cut(s) 850, 914
MluCI AATT 7 cut(s) 47, 424, 522, 628, 863, 1022, 1057
MseI TTAA 5 cut(s) 326, 354, 521, 978, 1081
MspA1I CMGCKG 3 cut(s) 454, 858, 1001
MspI CCGG 1 cut(s) 779
MspR9I CCNGG 2 cut(s) 738, 780
Mva1269I GAATGC 2 cut(s) 95, 830
MvaI CCWGG 1 cut(s) 738
MwoI GCNNNNNNNGC 2 cut(s) 280, 792
NciI CCSGG 1 cut(s) 780
NlaIII CATG 3 cut(s) 165, 278, 623
NlaIV GGNNCC 2 cut(s) 530, 762
NspI RCATGY 1 cut(s) 623
PaeR7I CTCGAG 1 cut(s) 134
PciI ACATGT 1 cut(s) 619
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PctI GAATGC 2 cut(s) 95, 830
PfeI GAWTC 3 cut(s) 8, 14, 775
PfoI TCCNGGA 1 cut(s) 778
PkrI GCNGC 4 cut(s) 450, 453, 835, 1003
PscI ACATGT 1 cut(s) 619
PshBI ATTAAT 1 cut(s) 521
PsiI TTATAA 1 cut(s) 771
Psp6I CCWGG 1 cut(s) 736
PspGI CCWGG 1 cut(s) 736
PspN4I GGNNCC 2 cut(s) 530, 762
PspPI GGNCC 1 cut(s) 761
PsuI RGATCY 2 cut(s) 850, 914
PvuII CAGCTG 2 cut(s) 454, 858
SaqAI TTAA 5 cut(s) 326, 354, 521, 978, 1081
SatI GCNGC 4 cut(s) 449, 452, 834, 1002
Sau96I GGNCC 1 cut(s) 761
ScrFI CCNGG 2 cut(s) 738, 780
SfaNI GCATC 3 cut(s) 304, 572, 773
SfcI CTRYAG 1 cut(s) 693
Sfr274I CTCGAG 1 cut(s) 134
SinI GGWCC 1 cut(s) 761
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 4 cut(s) 134, 185, 657, 664
SmoI CTYRAG 4 cut(s) 134, 185, 657, 664
Sse9I AATT 7 cut(s) 47, 424, 522, 628, 863, 1022, 1057
SsiI CCGC 3 cut(s) 5, 449, 1001
SspMI CTAG 2 cut(s) 638, 723
StyD4I CCNGG 2 cut(s) 736, 778
TaaI ACNGT 1 cut(s) 708
TaiI ACGT 4 cut(s) 225, 231, 513, 883
TaqI TCGA 2 cut(s) 135, 299
TasI AATT 7 cut(s) 47, 424, 522, 628, 863, 1022, 1057
TauI GCSGC 2 cut(s) 451, 1004
TfiI GAWTC 3 cut(s) 8, 14, 775
Tru1I TTAA 5 cut(s) 326, 354, 521, 978, 1081
Tru9I TTAA 5 cut(s) 326, 354, 521, 978, 1081
TscAI CASTG 2 cut(s) 68, 214
TseI GCWGC 2 cut(s) 451, 833
TspDTI ATGAA 2 cut(s) 486, 1015
TspGWI ACGGA 1 cut(s) 836
TspRI CASTG 2 cut(s) 68, 214
VpaK11BI GGWCC 1 cut(s) 761
VspI ATTAAT 1 cut(s) 521
XapI RAATTY 2 cut(s) 863, 1057
XbaI TCTAGA 1 cut(s) 637
XceI RCATGY 1 cut(s) 623
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 2 cut(s) 638, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.