AT2G31290

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014573
Physical Location & Seq
Forward (+)
13343724 .. 13346332
2609 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31290.1

Sequence Viewer

Length: 1248 bp
ATGGCTATGACACGAGAGTTATATCGGATTCTGGGTACCAAGTATGCTCCATTGTTAATCCGAAGATTCTCACTTTGGTCAACGAAGAAAGACCCTGATCTCGAATCTGCTCTCTCGCGTAACAAGCGATGGATTGTTAACAGTCGGCTCAAGAACATTATCTTAAGGTGTCCCAATCAGGTTGCATCGATTAAGTTTCTACAGAAGAAGTTTAAGACTCTTGATCTTCAGGGGAAAGCCTTGAATTGGCTTAAGAAATACCCTTGTTGTTTCCATGTTTATCTCGAGAACGATGAGTATTACTGTAGGTTAACGAAACCGATGATGACGCTTGTGGAAGAGGAAGAGTTGGTCAAAGATACACAAGAGCCTGTACTCGCAGATAGGCTTGCAAAGCTGCTTATGTTGAGTGTTAATCAGCGTCTCAATGTCGTGAAGCTTAACGAGTTTAAGCGGAGCTTTGGATTCCCTGATGATTATGTTATCAGAATAGTTCCAAAGTACTCAGATGTGTTTCGGTTAGTGAATTATAGTGGTAGGAAGAGTTCAATGGAGATTGAGCTTTTGTTGTGGAAGCCTGAGTTGGCTGTCTCTGCAGTTGAAGCAGCAGCAAAGAAATGTGGCTCTGAGCCTAGTTTCTCTTGCTCTCTACCTTCCACGTGGACCAAACCGTGGGAGAGGTTCATGGAGTTTAATGCCTTTCCTTACATATCTCCGTATGAGGATCATGGGGATCTTGTTGAGGGTTCAAAGGAGAGTGAGAAGAGAAGTGTTGGTTTGGTGCACGAGTTACTCTCGTTGACGTTGTGGAAAAAGCTGTCAATCGTAAAGCTGAGTCATTTCAAGAGGGAATTTGGGTTACCGGAGAAGCTAAATGGTATGCTTCTGAAGCATCCAGGCATATTCTACGTTGGAAACAAGTATCAGGTTCACACTGTGATCCTCAGAGAAGGATACAATGGCTCGGAATTGATTCACAAGGACCCGCTCGTTGTTGTGAAGGATAAATTTGGGGAATTGATGCAGCAGGGCTTGTATGAGTATAATCACAGGCGATATTTGGCTAATCTAGAGAAGAAGAGAGAGAAAGGTATTGAATCTTTGAAGCCTGTGGTGCGAAAGAAAGACAGGAACCACGATCGAGATGATGTCGATGAAGAAGAAAACCATGGGGATCGACCAGGTGGTCTGTTTGATCCAGAAGAGAGAAAAAGGTTTTATCAGATTCTCTTCAGTGACACCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

415

Amino Acids

48.7

Weight (kDa)

9.2

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 29 - 344 7.9e-109 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31290 AT2G31290
fragaria_vesca FvH4_2g13920
malus_domestica MD05G1023500.v1.1
prunus_persica Prupe.8G028100_v2.0.a1 Prupe.8G028100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0275671
rosa_laevigata RLG00000013448
rosa_multiflora Rmu_sc0016068.1_g000004 Rmu_sc0018708.1_g000008
rosa_roxburghii Rroxscaffold_7G00193040
rosa_rugosa Rorug06G0095500
rosa_samantha Rh6AG207400 Rh6BG210000 Rh6CG213400 Rh6DG203100
rosa_wichuraiana Rw6G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1185
Acc65I GGTACC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 35
AccB7I CCANNNNNTGG 1 cut(s) 672
AccBSI CCGCTC 1 cut(s) 988
AccII CGCG 1 cut(s) 118
AciI CCGC 2 cut(s) 454, 986
AclWI GGATC 5 cut(s) 732, 741, 934, 1182, 1190
AcsI RAATTY 2 cut(s) 851, 1007
AcuI CTGAAG 3 cut(s) 212, 908, 1216
AcvI CACGTG 1 cut(s) 660
AdeI CACNNNGTG 1 cut(s) 937
AfaI GTAC 3 cut(s) 37, 375, 503
AfiI CCNNNNNNNGG 2 cut(s) 246, 672
AflII CTTAAG 2 cut(s) 163, 251
AgsI TTSAA 7 cut(s) 244, 549, 602, 750, 844, 1097, 1105
AjnI CCWGG 2 cut(s) 895, 1180
AjuI GAANNNNNNNTTGG 2 cut(s) 566, 598
AluBI AGCT 7 cut(s) 397, 439, 459, 562, 817, 832, 871
AluI AGCT 7 cut(s) 397, 439, 459, 562, 817, 832, 871
Alw21I GWGCWC 1 cut(s) 786
Alw26I GTCTC 2 cut(s) 428, 595
Alw44I GTGCAC 1 cut(s) 782
AlwI GGATC 5 cut(s) 732, 741, 934, 1182, 1190
Ama87I CYCGRG 1 cut(s) 284
ApaLI GTGCAC 1 cut(s) 782
ApeKI GCWGC 4 cut(s) 397, 605, 608, 1024
ApoI RAATTY 2 cut(s) 851, 1007
Asp700I GAANNNNTTC 1 cut(s) 972
Asp718I GGTACC 1 cut(s) 35
AspS9I GGNCC 2 cut(s) 663, 982
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 2 cut(s) 663, 982
BaeGI GKGCMC 1 cut(s) 786
BanI GGYRCC 1 cut(s) 35
BauI CACGAG 2 cut(s) 12, 785
BbrPI CACGTG 1 cut(s) 660
Bbv12I GWGCWC 1 cut(s) 786
BbvI GCAGC 4 cut(s) 384, 617, 620, 1036
BccI CCATC 1 cut(s) 123
BciT130I CCWGG 2 cut(s) 897, 1182
BciVI GTATCC 1 cut(s) 947
BcoDI GTCTC 2 cut(s) 428, 595
BfaI CTAG 2 cut(s) 633, 1070
BfmI CTRYAG 3 cut(s) 200, 304, 594
BfrI CTTAAG 2 cut(s) 163, 251
BfuI GTATCC 1 cut(s) 947
BisI GCNGC 4 cut(s) 398, 606, 609, 1025
BlsI GCNGC 4 cut(s) 399, 607, 610, 1026
BmcAI AGTACT 1 cut(s) 503
Bme1390I CCNGG 2 cut(s) 897, 1182
Bme18I GGWCC 2 cut(s) 663, 982
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 2 cut(s) 663, 982
BmiI GGNNCC 3 cut(s) 37, 984, 1133
BmrFI CCNGG 2 cut(s) 897, 1182
BmsI GCATC 3 cut(s) 194, 901, 1011
BplI GAGNNNNNCTC 2 cut(s) 779, 811
BpuEI CTTGAG 1 cut(s) 134
Bsa29I ATCGAT 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 660
BsaJI CCNNGG 2 cut(s) 671, 1168
BsaWI WCCGGW 1 cut(s) 862
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 672
BseBI CCWGG 2 cut(s) 897, 1182
BseCI ATCGAT 1 cut(s) 188
BseDI CCNNGG 2 cut(s) 671, 1168
BseGI GGATG 1 cut(s) 892
BseLI CCNNNNNNNGG 2 cut(s) 246, 672
BseMII CTCAG 5 cut(s) 519, 570, 618, 824, 958
BseSI GKGCMC 1 cut(s) 786
BseXI GCAGC 4 cut(s) 384, 617, 620, 1036
Bsh1236I CGCG 1 cut(s) 118
Bsh1285I CGRYCG 1 cut(s) 1141
BshNI GGYRCC 1 cut(s) 35
BshVI ATCGAT 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 1141
BsiHKAI GWGCWC 1 cut(s) 786
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 1 cut(s) 863
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 2 cut(s) 246, 672
BsmAI GTCTC 2 cut(s) 428, 595
BsmBI CGTCTC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 786
Bsp143I GATC 8 cut(s) 97, 223, 724, 733, 939, 1138, 1174, 1195
Bsp19I CCATGG 1 cut(s) 1168
BspACI CCGC 2 cut(s) 454, 986
BspCNI CTCAG 5 cut(s) 518, 571, 619, 825, 957
BspDI ATCGAT 1 cut(s) 188
BspFNI CGCG 1 cut(s) 118
BspLI GGNNCC 3 cut(s) 37, 984, 1133
BspMAI CTGCAG 1 cut(s) 598
BspPI GGATC 5 cut(s) 732, 741, 934, 1182, 1190
BspT107I GGYRCC 1 cut(s) 35
BspTI CTTAAG 2 cut(s) 163, 251
BsrBI CCGCTC 1 cut(s) 988
BssECI CCNNGG 2 cut(s) 671, 1168
BssMI GATC 8 cut(s) 97, 223, 724, 733, 939, 1138, 1174, 1195
BssSI CACGAG 2 cut(s) 12, 785
BssT1I CCWWGG 1 cut(s) 1168
Bst2BI CACGAG 2 cut(s) 12, 785
Bst2UI CCWGG 2 cut(s) 897, 1182
Bst4CI ACNGT 4 cut(s) 143, 305, 672, 937
Bst6I CTCTTC 7 cut(s) 333, 339, 536, 758, 1073, 1197, 1235
BstAFI CTTAAG 2 cut(s) 163, 251
BstBAI YACGTR 1 cut(s) 660
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 5 cut(s) 505, 579, 627, 833, 944
BstDSI CCRYGG 2 cut(s) 671, 1168
BstEII GGTNACC 1 cut(s) 858
BstF5I GGATG 1 cut(s) 892
BstFNI CGCG 1 cut(s) 118
BstKTI GATC 8 cut(s) 100, 226, 727, 736, 942, 1141, 1177, 1198
BstMAI GTCTC 2 cut(s) 428, 595
BstMBI GATC 8 cut(s) 97, 223, 724, 733, 939, 1138, 1174, 1195
BstMCI CGRYCG 1 cut(s) 1141
BstMWI GCNNNNNNNGC 6 cut(s) 124, 394, 593, 602, 889, 1114
BstNI CCWGG 2 cut(s) 897, 1182
BstPI GGTNACC 1 cut(s) 858
BstSCI CCNGG 2 cut(s) 895, 1180
BstSFI CTRYAG 3 cut(s) 200, 304, 594
BstSLI GKGCMC 1 cut(s) 786
BstUI CGCG 1 cut(s) 118
BstV1I GCAGC 4 cut(s) 384, 617, 620, 1036
BstX2I RGATCY 1 cut(s) 733
BstYI RGATCY 1 cut(s) 733
Bsu15I ATCGAT 1 cut(s) 188
BsuI GTATCC 1 cut(s) 947
BsuTUI ATCGAT 1 cut(s) 188
BtgI CCRYGG 2 cut(s) 671, 1168
BtgZI GCGATG 1 cut(s) 142
BtsCI GGATG 1 cut(s) 892
BtsIMutI CAGTG 2 cut(s) 933, 1240
Cac8I GCNNGC 1 cut(s) 390
Cfr13I GGNCC 2 cut(s) 663, 982
ClaI ATCGAT 1 cut(s) 188
CseI GACGC 2 cut(s) 337, 410
CsiI ACCWGGT 1 cut(s) 1180
Csp6I GTAC 3 cut(s) 36, 374, 502
CviAII CATG 4 cut(s) 275, 685, 728, 1169
CviQI GTAC 3 cut(s) 36, 374, 502
DdeI CTNAG 5 cut(s) 505, 579, 627, 833, 944
DpnI GATC 8 cut(s) 99, 225, 726, 735, 941, 1140, 1176, 1197
DpnII GATC 8 cut(s) 97, 223, 724, 733, 939, 1138, 1174, 1195
DraIII CACNNNGTG 1 cut(s) 937
DrdI GACNNNNNNGTC 1 cut(s) 1185
DseDI GACNNNNNNGTC 1 cut(s) 1185
Eam1104I CTCTTC 7 cut(s) 333, 339, 536, 758, 1073, 1197, 1235
EarI CTCTTC 7 cut(s) 333, 339, 536, 758, 1073, 1197, 1235
Eco130I CCWWGG 1 cut(s) 1168
Eco47I GGWCC 2 cut(s) 663, 982
Eco57I CTGAAG 3 cut(s) 212, 908, 1216
Eco72I CACGTG 1 cut(s) 660
Eco88I CYCGRG 1 cut(s) 284
Eco91I GGTNACC 1 cut(s) 858
EcoO109I RGGNCCY 1 cut(s) 982
EcoO65I GGTNACC 1 cut(s) 858
EcoRII CCWGG 2 cut(s) 895, 1180
EcoT14I CCWWGG 1 cut(s) 1168
ErhI CCWWGG 1 cut(s) 1168
Esp3I CGTCTC 1 cut(s) 428
FaeI CATG 4 cut(s) 278, 688, 731, 1172
FalI AAGNNNNNCTT 2 cut(s) 443, 475
FaqI GGGAC 1 cut(s) 156
FatI CATG 4 cut(s) 274, 684, 727, 1168
FauI CCCGC 1 cut(s) 993
Fnu4HI GCNGC 4 cut(s) 398, 606, 609, 1025
FokI GGATG 1 cut(s) 879
Fsp4HI GCNGC 4 cut(s) 398, 606, 609, 1025
FspBI CTAG 2 cut(s) 633, 1070
GluI GCNGC 4 cut(s) 398, 606, 609, 1025
HapII CCGG 1 cut(s) 863
HgaI GACGC 2 cut(s) 337, 410
Hin1II CATG 4 cut(s) 278, 688, 731, 1172
HincII GTYRAC 4 cut(s) 81, 139, 312, 801
HindII GTYRAC 4 cut(s) 81, 139, 312, 801
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 9 cut(s) 28, 66, 104, 217, 465, 835, 973, 1097, 1225
HpaI GTTAAC 2 cut(s) 139, 312
HpaII CCGG 1 cut(s) 863
Hpy166II GTNNAC 7 cut(s) 81, 139, 312, 663, 784, 801, 931
Hpy188I TCNGA 9 cut(s) 27, 62, 488, 508, 628, 888, 947, 967, 1224
Hpy8I GTNNAC 7 cut(s) 81, 139, 312, 663, 784, 801, 931
HpyAV CCTTC 3 cut(s) 663, 944, 994
HpyCH4III ACNGT 4 cut(s) 143, 305, 672, 937
HpyCH4IV ACGT 3 cut(s) 659, 803, 909
HpyCH4V TGCA 5 cut(s) 185, 392, 596, 784, 1024
HpyF10VI GCNNNNNNNGC 6 cut(s) 124, 394, 593, 602, 889, 1114
HpyF3I CTNAG 5 cut(s) 505, 579, 627, 833, 944
HpySE526I ACGT 3 cut(s) 659, 803, 909
Hsp92II CATG 4 cut(s) 278, 688, 731, 1172
KpnI GGTACC 1 cut(s) 39
KspAI GTTAAC 2 cut(s) 139, 312
Kzo9I GATC 8 cut(s) 97, 223, 724, 733, 939, 1138, 1174, 1195
LmnI GCTCC 2 cut(s) 52, 456
Lsp1109I GCAGC 4 cut(s) 384, 617, 620, 1036
LweI GCATC 3 cut(s) 194, 901, 1011
MabI ACCWGGT 1 cut(s) 1180
MaeI CTAG 2 cut(s) 633, 1070
MaeII ACGT 3 cut(s) 659, 803, 909
MaeIII GTNAC 4 cut(s) 119, 789, 858, 1235
MalI GATC 8 cut(s) 99, 225, 726, 735, 941, 1140, 1176, 1197
MbiI CCGCTC 1 cut(s) 988
MboI GATC 8 cut(s) 97, 223, 724, 733, 939, 1138, 1174, 1195
MflI RGATCY 1 cut(s) 733
MhlI GDGCHC 1 cut(s) 786
MluCI AATT 6 cut(s) 244, 526, 851, 968, 1007, 1016
MlyI GAGTC 2 cut(s) 211, 844
MmeI TCCRAC 1 cut(s) 892
MnlI CCTC 6 cut(s) 334, 672, 715, 736, 840, 953
MroXI GAANNNNTTC 1 cut(s) 972
MspCI CTTAAG 2 cut(s) 163, 251
MspI CCGG 1 cut(s) 863
MspR9I CCNGG 2 cut(s) 897, 1182
MvaI CCWGG 2 cut(s) 897, 1182
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 6 cut(s) 124, 394, 593, 602, 889, 1114
NcoI CCATGG 1 cut(s) 1168
NdeII GATC 8 cut(s) 97, 223, 724, 733, 939, 1138, 1174, 1195
NlaIII CATG 4 cut(s) 278, 688, 731, 1172
NlaIV GGNNCC 3 cut(s) 37, 984, 1133
NmuCI GTSAC 1 cut(s) 1235
PaeR7I CTCGAG 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 972
PfeI GAWTC 7 cut(s) 28, 66, 104, 465, 973, 1097, 1225
PflMI CCANNNNNTGG 1 cut(s) 672
PkrI GCNGC 4 cut(s) 399, 607, 610, 1026
Ple19I CGATCG 1 cut(s) 1141
PleI GAGTC 2 cut(s) 211, 843
PmaCI CACGTG 1 cut(s) 660
PmlI CACGTG 1 cut(s) 660
PpsI GAGTC 2 cut(s) 211, 843
Ppu21I YACGTR 1 cut(s) 660
PpuMI RGGWCCY 1 cut(s) 982
Psp5II RGGWCCY 1 cut(s) 982
Psp6I CCWGG 2 cut(s) 895, 1180
PspCI CACGTG 1 cut(s) 660
PspEI GGTNACC 1 cut(s) 858
PspGI CCWGG 2 cut(s) 895, 1180
PspN4I GGNNCC 3 cut(s) 37, 984, 1133
PspPI GGNCC 2 cut(s) 663, 982
PspPPI RGGWCCY 1 cut(s) 982
PsrI GAACNNNNNNTAC 2 cut(s) 529, 561
PstI CTGCAG 1 cut(s) 598
PsuI RGATCY 1 cut(s) 733
PvuI CGATCG 1 cut(s) 1141
RsaI GTAC 3 cut(s) 37, 375, 503
RsaNI GTAC 3 cut(s) 36, 374, 502
SatI GCNGC 4 cut(s) 398, 606, 609, 1025
Sau3AI GATC 8 cut(s) 97, 223, 724, 733, 939, 1138, 1174, 1195
Sau96I GGNCC 2 cut(s) 663, 982
ScaI AGTACT 1 cut(s) 503
SchI GAGTC 2 cut(s) 211, 844
ScrFI CCNGG 2 cut(s) 897, 1182
SduI GDGCHC 1 cut(s) 786
SexAI ACCWGGT 1 cut(s) 1180
SfaNI GCATC 3 cut(s) 194, 901, 1011
SfcI CTRYAG 3 cut(s) 200, 304, 594
Sfr274I CTCGAG 1 cut(s) 284
SinI GGWCC 2 cut(s) 663, 982
SlaI CTCGAG 1 cut(s) 284
SmlI CTYRAG 4 cut(s) 149, 163, 251, 284
SmoI CTYRAG 4 cut(s) 149, 163, 251, 284
Sse9I AATT 6 cut(s) 244, 526, 851, 968, 1007, 1016
SsiI CCGC 2 cut(s) 454, 986
SspMI CTAG 2 cut(s) 633, 1070
StyD4I CCNGG 2 cut(s) 895, 1180
StyI CCWWGG 1 cut(s) 1168
TaaI ACNGT 4 cut(s) 143, 305, 672, 937
TaiI ACGT 3 cut(s) 662, 806, 912
TaqI TCGA 6 cut(s) 102, 188, 285, 1141, 1152, 1177
TasI AATT 6 cut(s) 244, 526, 851, 968, 1007, 1016
TatI WGTACW 2 cut(s) 373, 501
TfiI GAWTC 7 cut(s) 28, 66, 104, 465, 973, 1097, 1225
TscAI CASTG 2 cut(s) 940, 1240
TseFI GTSAC 1 cut(s) 1235
TseI GCWGC 4 cut(s) 397, 605, 608, 1024
Tsp45I GTSAC 1 cut(s) 1235
TspDTI ATGAA 2 cut(s) 673, 1170
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 2 cut(s) 940, 1240
Van91I CCANNNNNTGG 1 cut(s) 672
Vha464I CTTAAG 2 cut(s) 163, 251
VneI GTGCAC 1 cut(s) 782
VpaK11BI GGWCC 2 cut(s) 663, 982
XapI RAATTY 2 cut(s) 851, 1007
XbaI TCTAGA 1 cut(s) 1069
XhoI CTCGAG 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 972
XspI CTAG 2 cut(s) 633, 1070
ZrmI AGTACT 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.