RLG00000013448

protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0014573
Physical Location & Seq
Reverse (-)
31621176 .. 31622384
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013448

Sequence Viewer

Length: 1209 bp
ATGGCATTGTTCACAGTGCACTTTAGAAACCCAAGACTTGTTGCCCGGAACTTTTCGCTGTGGTCAATGAAGAAGGACCCATCTCTTGAATCGGCATTGTCTAGGAACCGCCGGTGGGTGGTGAACAATCAACTTAAGAACATCATCCTTAGGTGCCCTGATCAGGTAGCAAAAGTGAGCTTCATTCAGACCAAGTTCAAGACTCTTGATCTCCAAGGAAAGGCTCTTAATTGGCTCAAGAAATACCCCTGCTGCTTTCAGGTCTATCTGCAGGGTGACGAGTACTACTGCCACCTCACGAAACCGATGATGGCTTTGGTCGAAGAGGAAGAATGTGTCAAAGATATGCAGGAACCTGTGTTTGTGGAGAGGTTGGCAAAGTTACTGATGATGAGCCGCAATCAAAGACTGAATGTTGTCAAGCTTAATGAACTCAAGCGGAATTTTGGTTTTCCGGATGACTATCTGCTTAGACTTGCGCCAAAGTATCCTGACATGTTTCGAATTGTTAATTATAGTGGCCGAAGAAGTTCCATGGAGATTGAGCTGGTGGCTTGGAATCCGGATTTAGCAGTTTCTGCCATTGAAGCTTCAGCTCAGAAGCAGGGAAGTGAGCCATGTTTCAGTTCCTCATTGCCTTCAACTTGGGTCAAGTCATGGGAAAGATTTCATGAGTTCAATGGAACTCCTTATATTTCTCCGTACTTGGACACCAAAGGTTTAGTGGATGGCTCAAAGGAGATGGAGAAGAGGACAGTGGGCTTGGTGCATGAGTTGTTGTCATTGACTCTATGGAAGAAGGCATCAATTGTAAAGCTCGGACATTTTCGGAGGGAGTTTGTTTTGCCAGAGAGATTGAATGCTTTGCTGCTGAAGCACCCTGGTATATTTTATGTATCAAATAAGTATCAGATATATACTGTCCTTCTTAGAGAAGGCTATAACGGGCAAGAACTGGTTCATAAGGATCCACTTGTTGTCATAAAGGAGAAGTTTGGGGAACTTATGCAGGATGGGCTTCATGAATATAATCGCAGGCGCCATTTAGTAAATCTAGAAAAAAGGAGAAACAAAGGCATGGTTTTGGGTAGATCAGATGAAGGCAAGGATTTGTCTGACCTTGATGAGCAGGGAGACAGGGGAGGTTTGTTTGACCCAGAAGAAAGAAAAAGATTTTATCAAGTTCTCTTTGACGATGGTGCCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

403

Amino Acids

46.95

Weight (kDa)

9.19

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 24 - 339 2.8e-107 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31290 AT2G31290
fragaria_vesca FvH4_2g13920
malus_domestica MD05G1023500.v1.1
prunus_persica Prupe.8G028100_v2.0.a1 Prupe.8G028100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0275671
rosa_laevigata RLG00000013448
rosa_multiflora Rmu_sc0016068.1_g000004 Rmu_sc0018708.1_g000008
rosa_roxburghii Rroxscaffold_7G00193040
rosa_rugosa Rorug06G0095500
rosa_samantha Rh6AG207400 Rh6BG210000 Rh6CG213400 Rh6DG203100
rosa_wichuraiana Rw6G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 153, 1038, 1199
AccIII TCCGGA 2 cut(s) 454, 562
AciI CCGC 3 cut(s) 109, 397, 439
AclWI GGATC 2 cut(s) 962, 975
AcoI YGGCCR 1 cut(s) 520
AcsI RAATTY 1 cut(s) 442
AcuI CTGAAG 2 cut(s) 576, 893
AcyI GRCGYC 1 cut(s) 1039
AfaI GTAC 2 cut(s) 284, 704
AfiI CCNNNNNNNGG 4 cut(s) 115, 118, 163, 220
AflII CTTAAG 1 cut(s) 134
AflIII ACRYGT 1 cut(s) 495
AgsI TTSAA 6 cut(s) 89, 199, 587, 642, 679, 859
AjnI CCWGG 1 cut(s) 880
AluBI AGCT 6 cut(s) 180, 424, 547, 590, 596, 817
AluI AGCT 6 cut(s) 180, 424, 547, 590, 596, 817
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 1128
Alw44I GTGCAC 1 cut(s) 17
AlwI GGATC 2 cut(s) 962, 975
AlwNI CAGNNNCTG 1 cut(s) 578
Aor13HI TCCGGA 2 cut(s) 454, 562
AoxI GGCC 1 cut(s) 520
ApaLI GTGCAC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 252, 868
ApoI RAATTY 1 cut(s) 442
Asp700I GAANNNNTTC 3 cut(s) 529, 666, 957
AspLEI GCGC 2 cut(s) 481, 1041
AspS9I GGNCC 1 cut(s) 76
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 2 cut(s) 133, 287
AsuII TTCGAA 1 cut(s) 502
AvaII GGWCC 1 cut(s) 76
AxyI CCTNAGG 1 cut(s) 149
BaeGI GKGCMC 3 cut(s) 21, 158, 1204
BamHI GGATCC 1 cut(s) 967
BanI GGYRCC 3 cut(s) 153, 1038, 1199
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 239, 855
BccI CCATC 6 cut(s) 88, 304, 722, 736, 1007, 1190
BciT130I CCWGG 1 cut(s) 882
BciVI GTATCC 1 cut(s) 498
BclI TGATCA 1 cut(s) 160
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 1128
BfaI CTAG 2 cut(s) 102, 1055
BfmI CTRYAG 1 cut(s) 269
BfoI RGCGCY 1 cut(s) 1042
BfrI CTTAAG 1 cut(s) 134
BfuI GTATCC 1 cut(s) 498
BisI GCNGC 3 cut(s) 253, 397, 869
BlsI GCNGC 3 cut(s) 254, 398, 870
BmcAI AGTACT 1 cut(s) 284
Bme1390I CCNGG 2 cut(s) 46, 882
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 7 cut(s) 78, 107, 155, 354, 969, 1040, 1201
BmrFI CCNGG 2 cut(s) 46, 882
BmsI GCATC 1 cut(s) 812
Bpu14I TTCGAA 1 cut(s) 502
BpuEI CTTGAG 2 cut(s) 221, 419
BpuMI CCSGG 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 1039
BsaJI CCNNGG 3 cut(s) 214, 534, 880
BsaWI WCCGGW 2 cut(s) 454, 562
Bsc4I CCNNNNNNNGG 4 cut(s) 115, 118, 163, 220
Bse118I RCCGGY 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 960
Bse21I CCTNAGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 632
Bse8I GATNNNNATC 1 cut(s) 462
BseAI TCCGGA 2 cut(s) 454, 562
BseBI CCWGG 1 cut(s) 882
BseDI CCNNGG 3 cut(s) 214, 534, 880
BseGI GGATG 4 cut(s) 144, 463, 733, 1018
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 4 cut(s) 115, 118, 163, 220
BseMI GCAATG 1 cut(s) 632
BseMII CTCAG 1 cut(s) 611
BseNI ACTGG 1 cut(s) 960
BseSI GKGCMC 3 cut(s) 21, 158, 1204
BseXI GCAGC 2 cut(s) 239, 855
BshFI GGCC 1 cut(s) 522
BshNI GGYRCC 3 cut(s) 153, 1038, 1199
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 4 cut(s) 46, 112, 455, 563
BslI CCNNNNNNNGG 4 cut(s) 115, 118, 163, 220
BsmAI GTCTC 1 cut(s) 1128
BsmI GAATGC 1 cut(s) 865
BsnI GGCC 1 cut(s) 522
Bsp119I TTCGAA 1 cut(s) 502
Bsp1286I GDGCHC 3 cut(s) 21, 158, 1204
Bsp13I TCCGGA 2 cut(s) 454, 562
Bsp143I GATC 4 cut(s) 160, 208, 967, 1091
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 3 cut(s) 109, 397, 439
BspANI GGCC 1 cut(s) 522
BspCNI CTCAG 1 cut(s) 610
BspEI TCCGGA 2 cut(s) 454, 562
BspHI TCATGA 2 cut(s) 670, 1021
BspLI GGNNCC 7 cut(s) 78, 107, 155, 354, 969, 1040, 1201
BspMAI CTGCAG 1 cut(s) 273
BspPI GGATC 2 cut(s) 962, 975
BspT104I TTCGAA 1 cut(s) 502
BspT107I GGYRCC 3 cut(s) 153, 1038, 1199
BspTI CTTAAG 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 632
BsrFI RCCGGY 1 cut(s) 111
BsrI ACTGG 1 cut(s) 960
BssAI RCCGGY 1 cut(s) 111
BssECI CCNNGG 3 cut(s) 214, 534, 880
BssMI GATC 4 cut(s) 160, 208, 967, 1091
BssNI GRCGYC 1 cut(s) 1039
BssT1I CCWWGG 2 cut(s) 214, 534
Bst2UI CCWGG 1 cut(s) 882
Bst4CI ACNGT 3 cut(s) 16, 757, 922
Bst6I CTCTTC 2 cut(s) 318, 743
BstACI GRCGYC 1 cut(s) 1039
BstAFI CTTAAG 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 578
BstBI TTCGAA 1 cut(s) 502
BstC8I GCNNGC 1 cut(s) 1037
BstDEI CTNAG 4 cut(s) 149, 470, 597, 929
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 4 cut(s) 144, 463, 733, 1018
BstH2I RGCGCY 1 cut(s) 1042
BstHHI GCGC 2 cut(s) 481, 1041
BstKTI GATC 4 cut(s) 163, 211, 970, 1094
BstMAI GTCTC 1 cut(s) 1128
BstMBI GATC 4 cut(s) 160, 208, 967, 1091
BstMWI GCNNNNNNNGC 4 cut(s) 578, 587, 874, 1015
BstNI CCWGG 1 cut(s) 882
BstNSI RCATGY 1 cut(s) 499
BstSCI CCNGG 2 cut(s) 44, 880
BstSFI CTRYAG 1 cut(s) 269
BstSLI GKGCMC 3 cut(s) 21, 158, 1204
BstV1I GCAGC 2 cut(s) 239, 855
BstX2I RGATCY 1 cut(s) 967
BstYI RGATCY 1 cut(s) 967
Bsu36I CCTNAGG 1 cut(s) 149
BsuI GTATCC 1 cut(s) 498
BsuRI GGCC 1 cut(s) 522
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 4 cut(s) 144, 463, 733, 1018
BtsIMutI CAGTG 2 cut(s) 21, 762
Cac8I GCNNGC 1 cut(s) 1037
CaiI CAGNNNCTG 1 cut(s) 578
CciI TCATGA 2 cut(s) 670, 1021
CfoI GCGC 2 cut(s) 481, 1041
Cfr10I RCCGGY 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 283, 703
CviAII CATG 9 cut(s) 496, 535, 618, 657, 671, 770, 1022, 1078, 1206
CviQI GTAC 2 cut(s) 283, 703
DdeI CTNAG 4 cut(s) 149, 470, 597, 929
DinI GGCGCC 1 cut(s) 1040
DpnI GATC 4 cut(s) 162, 210, 969, 1093
DpnII GATC 4 cut(s) 160, 208, 967, 1091
EaeI YGGCCR 1 cut(s) 520
Eam1104I CTCTTC 2 cut(s) 318, 743
EarI CTCTTC 2 cut(s) 318, 743
Eco130I CCWWGG 2 cut(s) 214, 534
Eco47I GGWCC 1 cut(s) 76
Eco57I CTGAAG 2 cut(s) 576, 893
Eco81I CCTNAGG 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 880
EcoT14I CCWWGG 2 cut(s) 214, 534
EgeI GGCGCC 1 cut(s) 1040
EheI GGCGCC 1 cut(s) 1040
ErhI CCWWGG 2 cut(s) 214, 534
FaeI CATG 9 cut(s) 499, 538, 621, 660, 674, 773, 1025, 1081, 1209
FatI CATG 9 cut(s) 495, 534, 617, 656, 670, 769, 1021, 1077, 1205
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 3 cut(s) 253, 397, 869
FokI GGATG 4 cut(s) 131, 470, 740, 1025
Fsp4HI GCNGC 3 cut(s) 253, 397, 869
FspBI CTAG 2 cut(s) 102, 1055
GlaI GCGC 2 cut(s) 480, 1040
GluI GCNGC 3 cut(s) 253, 397, 869
HaeII RGCGCY 1 cut(s) 1042
HaeIII GGCC 1 cut(s) 522
HapII CCGG 4 cut(s) 46, 112, 455, 563
HhaI GCGC 2 cut(s) 481, 1041
Hin1I GRCGYC 1 cut(s) 1039
Hin1II CATG 9 cut(s) 499, 538, 621, 660, 674, 773, 1025, 1081, 1209
Hin6I GCGC 2 cut(s) 479, 1039
HinP1I GCGC 2 cut(s) 479, 1039
HindIII AAGCTT 2 cut(s) 422, 588
HinfI GANTC 4 cut(s) 89, 202, 559, 787
HpaII CCGG 4 cut(s) 46, 112, 455, 563
HphI GGTGA 2 cut(s) 133, 287
Hpy166II GTNNAC 3 cut(s) 12, 19, 124
Hpy188I TCNGA 7 cut(s) 189, 600, 821, 831, 912, 1096, 1117
Hpy8I GTNNAC 3 cut(s) 12, 19, 124
HpyAV CCTTC 6 cut(s) 67, 648, 793, 929, 935, 1094
HpyCH4III ACNGT 3 cut(s) 16, 757, 922
HpyCH4V TGCA 5 cut(s) 19, 271, 349, 769, 1009
HpyF10VI GCNNNNNNNGC 4 cut(s) 578, 587, 874, 1015
HpyF3I CTNAG 4 cut(s) 149, 470, 597, 929
Hsp92I GRCGYC 1 cut(s) 1039
Hsp92II CATG 9 cut(s) 499, 538, 621, 660, 674, 773, 1025, 1081, 1209
HspAI GCGC 2 cut(s) 479, 1039
KasI GGCGCC 1 cut(s) 1038
Kpn2I TCCGGA 2 cut(s) 454, 562
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 4 cut(s) 160, 208, 967, 1091
Lsp1109I GCAGC 2 cut(s) 239, 855
LweI GCATC 1 cut(s) 812
MaeI CTAG 2 cut(s) 102, 1055
MaeIII GTNAC 2 cut(s) 275, 381
MalI GATC 4 cut(s) 162, 210, 969, 1093
MboI GATC 4 cut(s) 160, 208, 967, 1091
MboII GAAGA 7 cut(s) 82, 335, 341, 537, 760, 808, 1172
MfeI CAATTG 1 cut(s) 807
MflI RGATCY 1 cut(s) 967
MhlI GDGCHC 3 cut(s) 21, 158, 1204
MluCI AATT 5 cut(s) 229, 442, 504, 511, 807
Mly113I GGCGCC 1 cut(s) 1039
MlyI GAGTC 2 cut(s) 196, 781
MnlI CCTC 7 cut(s) 305, 319, 363, 640, 744, 825, 1136
MroI TCCGGA 2 cut(s) 454, 562
MroXI GAANNNNTTC 3 cut(s) 529, 666, 957
MseI TTAA 4 cut(s) 135, 228, 426, 510
MspCI CTTAAG 1 cut(s) 134
MspI CCGG 4 cut(s) 46, 112, 455, 563
MspR9I CCNGG 2 cut(s) 46, 882
MunI CAATTG 1 cut(s) 807
Mva1269I GAATGC 1 cut(s) 865
MvaI CCWGG 1 cut(s) 882
MwoI GCNNNNNNNGC 4 cut(s) 578, 587, 874, 1015
NarI GGCGCC 1 cut(s) 1039
NciI CCSGG 1 cut(s) 46
NcoI CCATGG 1 cut(s) 534
NdeII GATC 4 cut(s) 160, 208, 967, 1091
NlaIII CATG 9 cut(s) 499, 538, 621, 660, 674, 773, 1025, 1081, 1209
NlaIV GGNNCC 7 cut(s) 78, 107, 155, 354, 969, 1040, 1201
NmuCI GTSAC 1 cut(s) 275
NspI RCATGY 1 cut(s) 499
NspV TTCGAA 1 cut(s) 502
PagI TCATGA 2 cut(s) 670, 1021
PciI ACATGT 1 cut(s) 495
PctI GAATGC 1 cut(s) 865
PdmI GAANNNNTTC 3 cut(s) 529, 666, 957
PfeI GAWTC 2 cut(s) 89, 559
PkrI GCNGC 3 cut(s) 254, 398, 870
PleI GAGTC 2 cut(s) 196, 781
PluTI GGCGCC 1 cut(s) 1042
PpsI GAGTC 2 cut(s) 196, 781
PpuMI RGGWCCY 1 cut(s) 76
PscI ACATGT 1 cut(s) 495
Psp5II RGGWCCY 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 880
PspGI CCWGG 1 cut(s) 880
PspN4I GGNNCC 7 cut(s) 78, 107, 155, 354, 969, 1040, 1201
PspPI GGNCC 1 cut(s) 76
PspPPI RGGWCCY 1 cut(s) 76
PstI CTGCAG 1 cut(s) 273
PstNI CAGNNNCTG 1 cut(s) 578
PsuI RGATCY 1 cut(s) 967
RsaI GTAC 2 cut(s) 284, 704
RsaNI GTAC 2 cut(s) 283, 703
SaqAI TTAA 4 cut(s) 135, 228, 426, 510
SatI GCNGC 3 cut(s) 253, 397, 869
Sau3AI GATC 4 cut(s) 160, 208, 967, 1091
Sau96I GGNCC 1 cut(s) 76
ScaI AGTACT 1 cut(s) 284
SchI GAGTC 2 cut(s) 196, 781
ScrFI CCNGG 2 cut(s) 46, 882
SduI GDGCHC 3 cut(s) 21, 158, 1204
SfaNI GCATC 1 cut(s) 812
SfcI CTRYAG 1 cut(s) 269
SfoI GGCGCC 1 cut(s) 1040
SfuI TTCGAA 1 cut(s) 502
SgrAI CRCCGGYG 1 cut(s) 111
SinI GGWCC 1 cut(s) 76
SmlI CTYRAG 3 cut(s) 134, 236, 434
SmoI CTYRAG 3 cut(s) 134, 236, 434
Sse9I AATT 5 cut(s) 229, 442, 504, 511, 807
SsiI CCGC 3 cut(s) 109, 397, 439
SspDI GGCGCC 1 cut(s) 1038
SspMI CTAG 2 cut(s) 102, 1055
StyD4I CCNGG 2 cut(s) 44, 880
StyI CCWWGG 2 cut(s) 214, 534
TaaI ACNGT 3 cut(s) 16, 757, 922
TaqI TCGA 2 cut(s) 321, 502
TasI AATT 5 cut(s) 229, 442, 504, 511, 807
TatI WGTACW 1 cut(s) 282
TauI GCSGC 1 cut(s) 399
TfiI GAWTC 2 cut(s) 89, 559
Tru1I TTAA 4 cut(s) 135, 228, 426, 510
Tru9I TTAA 4 cut(s) 135, 228, 426, 510
TscAI CASTG 2 cut(s) 21, 762
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 2 cut(s) 252, 868
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 8 cut(s) 83, 172, 444, 659, 950, 1010, 1038, 1113
TspGWI ACGGA 1 cut(s) 690
TspRI CASTG 2 cut(s) 21, 762
Vha464I CTTAAG 1 cut(s) 134
VneI GTGCAC 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 76
XapI RAATTY 1 cut(s) 442
XbaI TCTAGA 1 cut(s) 1054
XceI RCATGY 1 cut(s) 499
XcmI CCANNNNNNNNNTGG 1 cut(s) 721
XmnI GAANNNNTTC 3 cut(s) 529, 666, 957
XspI CTAG 2 cut(s) 102, 1055
ZrmI AGTACT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.