Prupe.8G028100_v2.0.a1

protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0014573
Physical Location & Seq
Reverse (-)
2541499 .. 2544942
3444 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G028100.1

Sequence Viewer

Length: 1224 bp
ATGGTTGTTATAATGCACTTTCGGAACCCAAGACTTGTTCAATACTTCGTTCGGAACTTTTCTCTGTGGTCAATGAAGAAGGATCCATATCTTGAATCAGCGCTGTCTAAGAATCGCCGATGGATAGTGAATAATCAAATAAAAAACATCATCCTGAGGTGCCCTGATCAAGTAGCAACAGTGAGATTCATTCAGAAGAAGTTCAAGACCCTTGATCTCCAAGGAAAGGCTCTCAATTGGCTCAAAAAGTACCCATGCTGCTTTCAAGTCTATTTGCAGGGTGATGAGTACTACTGCCAGCTAACAAAACGAATGATGGGTTTGGTGGAAGAGGAAGAATCTGTTAAAGACATGCAGGAATATGTGTTTGTTGAGAGATTAACAAAGTTACTTATGATGAGCTCCAATAAAAGACTAAATGTTGTCAAGCTTAATGAACTAAAGCGGAACTTAGGTTTTCCAGATGACTATTTGATTAGACTTGTGCCAAAGTATTCTGATATGTTTCAGATTGTTAATTATAGTGGGCGGCGGAGTTCCATGGAGATTGAGCTGGTGTCTTGGAATCCAGATTTAGCGGTTTCTGCTATTGAAGCTTCAGCTCACAAGCAAGGAACTGAGCCATGTTTCACATGCTCATTGCCTTCAACTTGGGTCAAGTCGTGGGAAAGGTTTCATGAATTTAATGCGACACCTTATATTTCACCCTACTTGGACTCCAAAGGCTTAGTGGAGGGATCAAAGGAGATGGAGAAGAGGACGGTGGGTTTGGTGCATGAGTTGTTGTCATTGACTCTATGGAAGAAAGCATCAATTGCAAAGCTGGGACATTTTCAGAGAGAATTTTTTTTGCCAGAGAAACTGAACGTTTTGCTGCTCAAGCACCCTGGCATATTCTATGTCTCTAATAAGTATCAGATTTATACTGTCCTTCTTAGAGAAGGTTATAATGAGCAAGGACTGGTAGATAAGGATCCACTTGTTGTTGTGAAGGAGAAATTTGGAGAACTTATGCAGGAGGGGCTTCATGAATATAACCGCAGGCGCCATTTGGTAAATCTAGAAAAGAAGAAAAAGAAAGGCATGGTTTTGGGTAGACCAAATGAAGGCAAGGACAGGAGCTCTGAGATGTCTAACCCTGATGATCAGGGAGATAGAGGAGGATTGTTTGACCCAGAAGAAAGAAAGCGATTCTATAAGGTTCTCTTTGATGATGGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

408

Amino Acids

47.83

Weight (kDa)

9.28

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31290 AT2G31290
fragaria_vesca FvH4_2g13920
malus_domestica MD05G1023500.v1.1
prunus_persica Prupe.8G028100_v2.0.a1 Prupe.8G028100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0275671
rosa_laevigata RLG00000013448
rosa_multiflora Rmu_sc0016068.1_g000004 Rmu_sc0018708.1_g000008
rosa_roxburghii Rroxscaffold_7G00193040
rosa_rugosa Rorug06G0095500
rosa_samantha Rh6AG207400 Rh6BG210000 Rh6CG213400 Rh6DG203100
rosa_wichuraiana Rw6G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 11, 948
AccB1I GGYRCC 3 cut(s) 159, 1044, 1217
AccI GTMKAC 1 cut(s) 1096
AciI CCGC 5 cut(s) 445, 529, 532, 578, 1039
AclI AACGTT 1 cut(s) 867
AclWI GGATC 5 cut(s) 77, 90, 745, 968, 981
AcsI RAATTY 3 cut(s) 680, 842, 998
AcuI CTGAAG 1 cut(s) 582
AcyI GRCGYC 1 cut(s) 1045
AfaI GTAC 2 cut(s) 251, 290
AfeI AGCGCT 1 cut(s) 102
AfiI CCNNNNNNNGG 2 cut(s) 226, 1106
AgsI TTSAA 6 cut(s) 41, 95, 205, 266, 593, 648
AjnI CCWGG 1 cut(s) 886
AluBI AGCT 8 cut(s) 301, 402, 430, 553, 596, 602, 823, 1122
AluI AGCT 8 cut(s) 301, 402, 430, 553, 596, 602, 823, 1122
Alw21I GWGCWC 2 cut(s) 404, 1124
Alw26I GTCTC 1 cut(s) 907
AlwI GGATC 5 cut(s) 77, 90, 745, 968, 981
Aor51HI AGCGCT 1 cut(s) 102
ApeKI GCWGC 2 cut(s) 258, 874
ApoI RAATTY 3 cut(s) 680, 842, 998
ArsI GACNNNNNNTTYG 2 cut(s) 751, 783
Asp700I GAANNNNTTC 2 cut(s) 200, 672
AspLEI GCGC 2 cut(s) 103, 1047
AsuHPI GGTGA 2 cut(s) 293, 696
AxyI CCTNAGG 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 164
BamHI GGATCC 2 cut(s) 82, 973
BanI GGYRCC 3 cut(s) 159, 1044, 1217
BanII GRGCYC 2 cut(s) 404, 1124
Bbv12I GWGCWC 2 cut(s) 404, 1124
BbvI GCAGC 2 cut(s) 245, 861
BccI CCATC 4 cut(s) 114, 310, 742, 1208
BciT130I CCWGG 1 cut(s) 888
BclI TGATCA 2 cut(s) 166, 1144
BcoDI GTCTC 1 cut(s) 907
BfaI CTAG 1 cut(s) 1061
BfoI RGCGCY 2 cut(s) 104, 1048
BisI GCNGC 3 cut(s) 259, 530, 875
BlsI GCNGC 3 cut(s) 260, 531, 876
BmcAI AGTACT 1 cut(s) 290
Bme1390I CCNGG 1 cut(s) 888
BmiI GGNNCC 6 cut(s) 26, 84, 161, 975, 1046, 1219
BmrFI CCNGG 1 cut(s) 888
BmsI GCATC 1 cut(s) 818
BpuEI CTTGAG 1 cut(s) 863
BsaBI GATNNNNATC 2 cut(s) 87, 972
BsaHI GRCGYC 1 cut(s) 1045
BsaJI CCNNGG 3 cut(s) 220, 540, 886
BsaXI ACNNNNNCTCC 2 cut(s) 701, 731
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 1106
Bse1I ACTGG 1 cut(s) 966
Bse21I CCTNAGG 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 638
Bse8I GATNNNNATC 2 cut(s) 87, 972
BseBI CCWGG 1 cut(s) 888
BseDI CCNNGG 3 cut(s) 220, 540, 886
BseGI GGATG 1 cut(s) 150
BseJI GATNNNNATC 2 cut(s) 87, 972
BseLI CCNNNNNNNGG 2 cut(s) 226, 1106
BseMI GCAATG 1 cut(s) 638
BseMII CTCAG 3 cut(s) 146, 609, 1116
BseNI ACTGG 1 cut(s) 966
BseRI GAGGAG 1 cut(s) 1173
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 2 cut(s) 245, 861
BseYI CCCAGC 1 cut(s) 823
BshNI GGYRCC 3 cut(s) 159, 1044, 1217
BsiHKAI GWGCWC 2 cut(s) 404, 1124
BslFI GGGAC 1 cut(s) 840
BslI CCNNNNNNNGG 2 cut(s) 226, 1106
BsmAI GTCTC 1 cut(s) 907
BsmFI GGGAC 1 cut(s) 840
Bsp1286I GDGCHC 3 cut(s) 164, 404, 1124
Bsp143I GATC 6 cut(s) 82, 166, 214, 737, 973, 1144
Bsp19I CCATGG 1 cut(s) 540
BspACI CCGC 5 cut(s) 445, 529, 532, 578, 1039
BspCNI CTCAG 3 cut(s) 147, 610, 1117
BspHI TCATGA 2 cut(s) 676, 1027
BspLI GGNNCC 6 cut(s) 26, 84, 161, 975, 1046, 1219
BspPI GGATC 5 cut(s) 77, 90, 745, 968, 981
BspT107I GGYRCC 3 cut(s) 159, 1044, 1217
BsrDI GCAATG 1 cut(s) 638
BsrI ACTGG 1 cut(s) 966
BssECI CCNNGG 3 cut(s) 220, 540, 886
BssMI GATC 6 cut(s) 82, 166, 214, 737, 973, 1144
BssNI GRCGYC 1 cut(s) 1045
BssT1I CCWWGG 2 cut(s) 220, 540
Bst2UI CCWGG 1 cut(s) 888
Bst4CI ACNGT 3 cut(s) 181, 763, 928
Bst6I CTCTTC 2 cut(s) 324, 749
BstACI GRCGYC 1 cut(s) 1045
BstAPI GCANNNNNTGC 1 cut(s) 815
BstC8I GCNNGC 2 cut(s) 299, 1043
BstDEI CTNAG 7 cut(s) 108, 155, 451, 618, 727, 935, 1125
BstDSI CCRYGG 1 cut(s) 540
BstF5I GGATG 1 cut(s) 150
BstH2I RGCGCY 2 cut(s) 104, 1048
BstHHI GCGC 2 cut(s) 103, 1047
BstKTI GATC 6 cut(s) 85, 169, 217, 740, 976, 1147
BstMAI GTCTC 1 cut(s) 907
BstMBI GATC 6 cut(s) 82, 166, 214, 737, 973, 1144
BstMWI GCNNNNNNNGC 5 cut(s) 584, 593, 815, 880, 1021
BstNI CCWGG 1 cut(s) 888
BstNSI RCATGY 2 cut(s) 355, 636
BstSCI CCNGG 1 cut(s) 886
BstSLI GKGCMC 1 cut(s) 164
BstV1I GCAGC 2 cut(s) 245, 861
BstX2I RGATCY 2 cut(s) 82, 973
BstYI RGATCY 2 cut(s) 82, 973
Bsu36I CCTNAGG 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 540
BtsCI GGATG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 2 cut(s) 299, 1043
CciI TCATGA 2 cut(s) 676, 1027
CfoI GCGC 2 cut(s) 103, 1047
Csp6I GTAC 2 cut(s) 250, 289
CviAII CATG 9 cut(s) 255, 352, 541, 624, 633, 677, 776, 1028, 1084
CviQI GTAC 2 cut(s) 250, 289
DdeI CTNAG 7 cut(s) 108, 155, 451, 618, 727, 935, 1125
DinI GGCGCC 1 cut(s) 1046
DpnI GATC 6 cut(s) 84, 168, 216, 739, 975, 1146
DpnII GATC 6 cut(s) 82, 166, 214, 737, 973, 1144
Eam1104I CTCTTC 2 cut(s) 324, 749
EarI CTCTTC 2 cut(s) 324, 749
EciI GGCGGA 1 cut(s) 547
Ecl136II GAGCTC 2 cut(s) 402, 1122
Eco130I CCWWGG 2 cut(s) 220, 540
Eco24I GRGCYC 2 cut(s) 404, 1124
Eco47III AGCGCT 1 cut(s) 102
Eco53kI GAGCTC 2 cut(s) 402, 1122
Eco57I CTGAAG 1 cut(s) 582
Eco81I CCTNAGG 1 cut(s) 155
EcoICRI GAGCTC 2 cut(s) 402, 1122
EcoRII CCWGG 1 cut(s) 886
EcoT14I CCWWGG 2 cut(s) 220, 540
EcoT38I GRGCYC 2 cut(s) 404, 1124
EgeI GGCGCC 1 cut(s) 1046
EheI GGCGCC 1 cut(s) 1046
ErhI CCWWGG 2 cut(s) 220, 540
FaeI CATG 9 cut(s) 258, 355, 544, 627, 636, 680, 779, 1031, 1087
FalI AAGNNNNNCTT 4 cut(s) 434, 466, 1190, 1222
FaqI GGGAC 1 cut(s) 840
FatI CATG 9 cut(s) 254, 351, 540, 623, 632, 676, 775, 1027, 1083
FbaI TGATCA 2 cut(s) 166, 1144
FblI GTMKAC 1 cut(s) 1096
Fnu4HI GCNGC 3 cut(s) 259, 530, 875
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 2 cut(s) 404, 1124
Fsp4HI GCNGC 3 cut(s) 259, 530, 875
FspBI CTAG 1 cut(s) 1061
GlaI GCGC 2 cut(s) 102, 1046
GluI GCNGC 3 cut(s) 259, 530, 875
GsaI CCCAGC 1 cut(s) 827
HaeII RGCGCY 2 cut(s) 104, 1048
HhaI GCGC 2 cut(s) 103, 1047
Hin1I GRCGYC 1 cut(s) 1045
Hin1II CATG 9 cut(s) 258, 355, 544, 627, 636, 680, 779, 1031, 1087
Hin6I GCGC 2 cut(s) 101, 1045
HinP1I GCGC 2 cut(s) 101, 1045
HindIII AAGCTT 2 cut(s) 428, 594
HinfI GANTC 8 cut(s) 95, 112, 186, 338, 565, 716, 793, 1191
HphI GGTGA 2 cut(s) 293, 696
Hpy166II GTNNAC 1 cut(s) 1097
Hpy188I TCNGA 8 cut(s) 24, 54, 195, 499, 510, 837, 918, 1126
Hpy188III TCNNGA 8 cut(s) 92, 154, 205, 461, 569, 677, 1028, 1061
Hpy8I GTNNAC 1 cut(s) 1097
HpyAV CCTTC 6 cut(s) 73, 654, 935, 941, 985, 1100
HpyCH4III ACNGT 3 cut(s) 181, 763, 928
HpyCH4IV ACGT 1 cut(s) 867
HpyCH4V TGCA 6 cut(s) 16, 277, 355, 775, 818, 1015
HpyF10VI GCNNNNNNNGC 5 cut(s) 584, 593, 815, 880, 1021
HpyF3I CTNAG 7 cut(s) 108, 155, 451, 618, 727, 935, 1125
HpySE526I ACGT 1 cut(s) 867
Hsp92I GRCGYC 1 cut(s) 1045
Hsp92II CATG 9 cut(s) 258, 355, 544, 627, 636, 680, 779, 1031, 1087
HspAI GCGC 2 cut(s) 101, 1045
KasI GGCGCC 1 cut(s) 1044
Ksp22I TGATCA 2 cut(s) 166, 1144
Kzo9I GATC 6 cut(s) 82, 166, 214, 737, 973, 1144
LmnI GCTCC 2 cut(s) 407, 1119
Lsp1109I GCAGC 2 cut(s) 245, 861
LweI GCATC 1 cut(s) 818
MaeI CTAG 1 cut(s) 1061
MaeII ACGT 1 cut(s) 867
MaeIII GTNAC 1 cut(s) 387
MalI GATC 6 cut(s) 84, 168, 216, 739, 975, 1146
MboI GATC 6 cut(s) 82, 166, 214, 737, 973, 1144
MboII GAAGA 8 cut(s) 88, 208, 341, 347, 766, 814, 1081, 1190
MfeI CAATTG 2 cut(s) 235, 813
MflI RGATCY 2 cut(s) 82, 973
MhlI GDGCHC 3 cut(s) 164, 404, 1124
MluCI AATT 6 cut(s) 235, 517, 680, 813, 842, 998
Mly113I GGCGCC 1 cut(s) 1045
MlyI GAGTC 2 cut(s) 710, 787
MnlI CCTC 7 cut(s) 150, 325, 727, 750, 1012, 1151, 1154
MroXI GAANNNNTTC 2 cut(s) 200, 672
MseI TTAA 5 cut(s) 345, 380, 432, 516, 684
MspR9I CCNGG 1 cut(s) 888
MunI CAATTG 2 cut(s) 235, 813
MvaI CCWGG 1 cut(s) 888
MwoI GCNNNNNNNGC 5 cut(s) 584, 593, 815, 880, 1021
NarI GGCGCC 1 cut(s) 1045
NcoI CCATGG 1 cut(s) 540
NdeII GATC 6 cut(s) 82, 166, 214, 737, 973, 1144
NlaIII CATG 9 cut(s) 258, 355, 544, 627, 636, 680, 779, 1031, 1087
NlaIV GGNNCC 6 cut(s) 26, 84, 161, 975, 1046, 1219
NspI RCATGY 2 cut(s) 355, 636
PagI TCATGA 2 cut(s) 676, 1027
PdmI GAANNNNTTC 2 cut(s) 200, 672
PfeI GAWTC 6 cut(s) 95, 112, 186, 338, 565, 1191
PkrI GCNGC 3 cut(s) 260, 531, 876
PleI GAGTC 2 cut(s) 710, 787
PluTI GGCGCC 1 cut(s) 1048
PpsI GAGTC 2 cut(s) 710, 787
PsiI TTATAA 2 cut(s) 11, 948
Psp124BI GAGCTC 2 cut(s) 404, 1124
Psp1406I AACGTT 1 cut(s) 867
Psp6I CCWGG 1 cut(s) 886
PspFI CCCAGC 1 cut(s) 823
PspGI CCWGG 1 cut(s) 886
PspN4I GGNNCC 6 cut(s) 26, 84, 161, 975, 1046, 1219
PsuI RGATCY 2 cut(s) 82, 973
RsaI GTAC 2 cut(s) 251, 290
RsaNI GTAC 2 cut(s) 250, 289
SacI GAGCTC 2 cut(s) 404, 1124
SaqAI TTAA 5 cut(s) 345, 380, 432, 516, 684
SatI GCNGC 3 cut(s) 259, 530, 875
Sau3AI GATC 6 cut(s) 82, 166, 214, 737, 973, 1144
ScaI AGTACT 1 cut(s) 290
SchI GAGTC 2 cut(s) 710, 787
ScrFI CCNGG 1 cut(s) 888
SduI GDGCHC 3 cut(s) 164, 404, 1124
SfaNI GCATC 1 cut(s) 818
SfoI GGCGCC 1 cut(s) 1046
SmlI CTYRAG 1 cut(s) 878
SmoI CTYRAG 1 cut(s) 878
Sse9I AATT 6 cut(s) 235, 517, 680, 813, 842, 998
SsiI CCGC 5 cut(s) 445, 529, 532, 578, 1039
SspDI GGCGCC 1 cut(s) 1044
SspMI CTAG 1 cut(s) 1061
SstI GAGCTC 2 cut(s) 404, 1124
StyD4I CCNGG 1 cut(s) 886
StyI CCWWGG 2 cut(s) 220, 540
TaaI ACNGT 3 cut(s) 181, 763, 928
TaiI ACGT 1 cut(s) 870
TasI AATT 6 cut(s) 235, 517, 680, 813, 842, 998
TatI WGTACW 1 cut(s) 288
TauI GCSGC 1 cut(s) 532
TfiI GAWTC 6 cut(s) 95, 112, 186, 338, 565, 1191
Tru1I TTAA 5 cut(s) 345, 380, 432, 516, 684
Tru9I TTAA 5 cut(s) 345, 380, 432, 516, 684
TscAI CASTG 1 cut(s) 186
TseI GCWGC 2 cut(s) 258, 874
TspDTI ATGAA 8 cut(s) 89, 178, 450, 665, 693, 1016, 1044, 1119
TspRI CASTG 1 cut(s) 186
XapI RAATTY 3 cut(s) 680, 842, 998
XbaI TCTAGA 1 cut(s) 1060
XceI RCATGY 2 cut(s) 355, 636
XcmI CCANNNNNNNNNTGG 1 cut(s) 727
XmiI GTMKAC 1 cut(s) 1096
XmnI GAANNNNTTC 2 cut(s) 200, 672
XspI CTAG 1 cut(s) 1061
ZrmI AGTACT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.