AT2G37200

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016548
Physical Location & Seq
Reverse (-)
15621815 .. 15623160
1346 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37200.1

Sequence Viewer

Length: 543 bp
ATGATGAACGTGAGCCGGCCGGCGATTCACCCGGTTGATGCTCTTCCGGTGGCTCCTACTGCCGGAGCGATCGATAGACCACCAGTGAGGATGAAGGATGTGCAAGGCATGCCCGGAACCACCGGCGGTCTCATCCTCCGTCTCTCTCAGTTCGTTCCCGCTCTTATCTCCGTCTCCGTCATGGTCACTACCTCCGACTTCCGCTCCGCCACCGCATTCTGTTGCTTGGTTCTTGCGGTTAGCCTGCAAAGCCTGTGGAGCTTGTCTCTTTTTATTATCGATGCTTATGCTCTTCTGGTGAGAAGAAGCCTTCGAAATCACTCCGTTGTTCAGTGTTTCACTATTGGAGATGGAGTCACATCGACGCTCACGTTTGCAGCTGCATCTGCTTCTGCTGGCATAACTGTACTCATCAACGATCTTGGACAATGTAACGTGAATCACTGCACAAGGTTTGAGACTGCCACAGCAATGGCCTTCATCAGCTGGTTTGCTGTGTCTCCTTCCTTTATTCTCAACTTCTGGTCCTTAGCCACCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

180

Amino Acids

19.23

Weight (kDa)

8.4

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 37 - 165 5.8e-26 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016548)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37200 AT2G37200
fragaria_vesca FvH4_6g15940
malus_domestica MD12G1118500.v1.1
prunus_persica Prupe.6G236400_v2.0.a1
pyrus_communis pycom12g11710
rosa_chinensis RchiOBHm_Chr3g0469641
rosa_multiflora Rmu_sc0006483.1_g000020
rosa_roxburghii Rroxscaffold_6G00411610
rosa_rugosa Rorug03G0102800
rosa_samantha Rh3AG152500 Rh3CG167300 Rh3DG199300
rosa_wichuraiana Rw3G014380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 161, 204
AciI CCGC 6 cut(s) 126, 159, 202, 207, 213, 236
AcoI YGGCCR 1 cut(s) 17
AfaI GTAC 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 62
AluBI AGCT 3 cut(s) 261, 380, 486
AluI AGCT 3 cut(s) 261, 380, 486
Alw26I GTCTC 6 cut(s) 134, 146, 178, 270, 452, 504
AoxI GGCC 2 cut(s) 17, 474
ApeKI GCWGC 2 cut(s) 377, 380
AspS9I GGNCC 1 cut(s) 525
AsuC2I CCSGG 2 cut(s) 32, 114
AsuHPI GGTGA 2 cut(s) 20, 310
AsuII TTCGAA 1 cut(s) 313
AvaII GGWCC 1 cut(s) 525
BbvI GCAGC 2 cut(s) 367, 389
BccI CCATC 1 cut(s) 344
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BcnI CCSGG 2 cut(s) 32, 114
BcoDI GTCTC 6 cut(s) 134, 146, 178, 270, 452, 504
BisI GCNGC 2 cut(s) 378, 381
BlsI GCNGC 2 cut(s) 379, 382
Bme1390I CCNGG 2 cut(s) 32, 114
Bme18I GGWCC 1 cut(s) 525
BmgT120I GGNCC 1 cut(s) 525
BmiI GGNNCC 2 cut(s) 54, 118
BmrFI CCNGG 2 cut(s) 32, 114
BmsI GCATC 3 cut(s) 28, 271, 392
BplI GAGNNNNNCTC 2 cut(s) 250, 282
Bpu10I CCTNAGC 1 cut(s) 529
Bpu14I TTCGAA 1 cut(s) 313
BpuMI CCSGG 2 cut(s) 32, 114
Bsa29I ATCGAT 2 cut(s) 72, 279
BsaI GGTCTC 1 cut(s) 134
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 339, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse118I RCCGGY 3 cut(s) 15, 19, 122
Bse1I ACTGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 477
BseCI ATCGAT 2 cut(s) 72, 279
BseGI GGATG 3 cut(s) 96, 103, 132
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 477
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 83
BseX3I CGGCCG 1 cut(s) 17
BseXI GCAGC 2 cut(s) 367, 389
BsgI GTGCAG 1 cut(s) 430
Bsh1285I CGRYCG 2 cut(s) 20, 72
BshFI GGCC 2 cut(s) 19, 476
BshVI ATCGAT 2 cut(s) 72, 279
BsiEI CGRYCG 2 cut(s) 20, 72
BsiSI CCGG 7 cut(s) 16, 20, 32, 47, 63, 114, 123
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 6 cut(s) 134, 146, 178, 270, 452, 504
BsmBI CGTCTC 2 cut(s) 146, 178
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 2 cut(s) 19, 476
Bso31I GGTCTC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 313
Bsp143I GATC 2 cut(s) 69, 418
BspACI CCGC 6 cut(s) 126, 159, 202, 207, 213, 236
BspANI GGCC 2 cut(s) 19, 476
BspCNI CTCAG 1 cut(s) 160
BspDI ATCGAT 2 cut(s) 72, 279
BspLI GGNNCC 2 cut(s) 54, 118
BspQI GCTCTTC 2 cut(s) 48, 297
BspT104I TTCGAA 1 cut(s) 313
BspTNI GGTCTC 1 cut(s) 134
BsrBI CCGCTC 2 cut(s) 161, 204
BsrDI GCAATG 1 cut(s) 477
BsrFI RCCGGY 3 cut(s) 15, 19, 122
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 3 cut(s) 15, 19, 122
BssMI GATC 2 cut(s) 69, 418
Bst4CI ACNGT 1 cut(s) 406
Bst6I CTCTTC 2 cut(s) 48, 297
BstAPI GCANNNNNTGC 1 cut(s) 109
BstBI TTCGAA 1 cut(s) 313
BstC8I GCNNGC 5 cut(s) 17, 21, 110, 245, 397
BstDEI CTNAG 2 cut(s) 147, 529
BstF5I GGATG 3 cut(s) 96, 103, 132
BstKTI GATC 2 cut(s) 72, 421
BstMAI GTCTC 6 cut(s) 134, 146, 178, 270, 452, 504
BstMBI GATC 2 cut(s) 69, 418
BstMCI CGRYCG 2 cut(s) 20, 72
BstMWI GCNNNNNNNGC 5 cut(s) 59, 109, 249, 258, 386
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 2 cut(s) 30, 112
BstV1I GCAGC 2 cut(s) 367, 389
BstXI CCANNNNNNTGG 1 cut(s) 472
BstZI CGGCCG 1 cut(s) 17
Bsu15I ATCGAT 2 cut(s) 72, 279
BsuRI GGCC 2 cut(s) 19, 476
BsuTUI ATCGAT 2 cut(s) 72, 279
BtsCI GGATG 3 cut(s) 96, 103, 132
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 3 cut(s) 90, 338, 442
Cac8I GCNNGC 5 cut(s) 17, 21, 110, 245, 397
Cfr10I RCCGGY 3 cut(s) 15, 19, 122
Cfr13I GGNCC 1 cut(s) 525
ClaI ATCGAT 2 cut(s) 72, 279
CseI GACGC 1 cut(s) 373
Csp6I GTAC 1 cut(s) 407
CspCI CAANNNNNGTGG 2 cut(s) 236, 271
CviAII CATG 2 cut(s) 109, 181
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 2 cut(s) 147, 529
DpnI GATC 2 cut(s) 71, 420
DpnII GATC 2 cut(s) 69, 418
EaeI YGGCCR 1 cut(s) 17
EagI CGGCCG 1 cut(s) 17
Eam1104I CTCTTC 2 cut(s) 48, 297
EarI CTCTTC 2 cut(s) 48, 297
EciI GGCGGA 1 cut(s) 196
EclXI CGGCCG 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 525
Eco52I CGGCCG 1 cut(s) 17
Esp3I CGTCTC 2 cut(s) 146, 178
FaeI CATG 2 cut(s) 112, 184
FaiI YATR 4 cut(s) 110, 182, 288, 401
FatI CATG 2 cut(s) 108, 180
FauI CCCGC 1 cut(s) 166
Fnu4HI GCNGC 2 cut(s) 378, 381
FokI GGATG 3 cut(s) 103, 110, 119
Fsp4HI GCNGC 2 cut(s) 378, 381
GluI GCNGC 2 cut(s) 378, 381
HaeIII GGCC 2 cut(s) 19, 476
HapII CCGG 7 cut(s) 16, 20, 32, 47, 63, 114, 123
HgaI GACGC 1 cut(s) 373
Hin1II CATG 2 cut(s) 112, 184
HinfI GANTC 3 cut(s) 25, 354, 439
HpaII CCGG 7 cut(s) 16, 20, 32, 47, 63, 114, 123
HphI GGTGA 2 cut(s) 20, 310
Hpy188I TCNGA 1 cut(s) 196
Hpy99I CGWCG 1 cut(s) 367
HpyAV CCTTC 4 cut(s) 88, 320, 487, 513
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4IV ACGT 3 cut(s) 9, 371, 435
HpyCH4V TGCA 5 cut(s) 103, 247, 377, 383, 447
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 109, 249, 258, 386
HpyF3I CTNAG 2 cut(s) 147, 529
HpySE526I ACGT 3 cut(s) 9, 371, 435
Hsp92II CATG 2 cut(s) 112, 184
KroI GCCGGC 2 cut(s) 15, 19
KroNI GCCGGC 2 cut(s) 17, 21
Kzo9I GATC 2 cut(s) 69, 418
LguI GCTCTTC 2 cut(s) 48, 297
LmnI GCTCC 4 cut(s) 58, 65, 209, 258
Lsp1109I GCAGC 2 cut(s) 367, 389
LweI GCATC 3 cut(s) 28, 271, 392
MaeII ACGT 3 cut(s) 9, 371, 435
MaeIII GTNAC 3 cut(s) 184, 355, 431
MalI GATC 2 cut(s) 71, 420
MbiI CCGCTC 2 cut(s) 161, 204
MboI GATC 2 cut(s) 69, 418
MboII GAAGA 3 cut(s) 35, 284, 315
MlyI GAGTC 1 cut(s) 363
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 3 cut(s) 81, 146, 202
MroNI GCCGGC 2 cut(s) 15, 19
MslI CAYNNNNRTG 1 cut(s) 470
MspA1I CMGCKG 2 cut(s) 380, 486
MspI CCGG 7 cut(s) 16, 20, 32, 47, 63, 114, 123
MspR9I CCNGG 2 cut(s) 32, 114
Mva1269I GAATGC 1 cut(s) 215
MwoI GCNNNNNNNGC 5 cut(s) 59, 109, 249, 258, 386
NaeI GCCGGC 2 cut(s) 17, 21
NciI CCSGG 2 cut(s) 32, 114
NdeII GATC 2 cut(s) 69, 418
NgoMIV GCCGGC 2 cut(s) 15, 19
NlaIII CATG 2 cut(s) 112, 184
NlaIV GGNNCC 2 cut(s) 54, 118
NmuCI GTSAC 2 cut(s) 184, 355
NspI RCATGY 1 cut(s) 112
NspV TTCGAA 1 cut(s) 313
PaeI GCATGC 1 cut(s) 112
PciSI GCTCTTC 2 cut(s) 48, 297
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PctI GAATGC 1 cut(s) 215
PdiI GCCGGC 2 cut(s) 17, 21
PfeI GAWTC 2 cut(s) 25, 439
PkrI GCNGC 2 cut(s) 379, 382
Ple19I CGATCG 1 cut(s) 72
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PspN4I GGNNCC 2 cut(s) 54, 118
PspPI GGNCC 1 cut(s) 525
PvuI CGATCG 1 cut(s) 72
PvuII CAGCTG 2 cut(s) 380, 486
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
RseI CAYNNNNRTG 1 cut(s) 470
SapI GCTCTTC 2 cut(s) 48, 297
SatI GCNGC 2 cut(s) 378, 381
Sau3AI GATC 2 cut(s) 69, 418
Sau96I GGNCC 1 cut(s) 525
SchI GAGTC 1 cut(s) 363
ScrFI CCNGG 2 cut(s) 32, 114
SetI ASST 8 cut(s) 12, 194, 263, 374, 382, 438, 455, 488
SfaNI GCATC 3 cut(s) 28, 271, 392
SfuI TTCGAA 1 cut(s) 313
SgrAI CRCCGGYG 1 cut(s) 122
SinI GGWCC 1 cut(s) 525
SmiMI CAYNNNNRTG 1 cut(s) 470
SphI GCATGC 1 cut(s) 112
SsiI CCGC 6 cut(s) 126, 159, 202, 207, 213, 236
StyD4I CCNGG 2 cut(s) 30, 112
TaaI ACNGT 1 cut(s) 406
TaiI ACGT 3 cut(s) 12, 374, 438
TaqI TCGA 4 cut(s) 72, 279, 313, 362
TatI WGTACW 1 cut(s) 406
TfiI GAWTC 2 cut(s) 25, 439
TscAI CASTG 3 cut(s) 90, 338, 449
TseFI GTSAC 2 cut(s) 184, 355
TseI GCWGC 2 cut(s) 377, 380
Tsp45I GTSAC 2 cut(s) 184, 355
TspDTI ATGAA 3 cut(s) 20, 107, 469
TspGWI ACGGA 4 cut(s) 128, 160, 166, 313
TspRI CASTG 3 cut(s) 90, 338, 449
VpaK11BI GGWCC 1 cut(s) 525
XceI RCATGY 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.