Prupe.6G236400_v2.0.a1

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016548
Physical Location & Seq
Forward (+)
23721602 .. 23724940
3339 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G236400.1

Sequence Viewer

Length: 816 bp
ATGCGTATTGCCCGATCAAAAAAATTGGAAGAGAATGAAAAAAAAAGAAGCATATGCCAATTGCAATGGGTGTACCAAGAACACATATACAAACATAGACAAGTGTTGGGTCACACAACGAGGCAGCAGCACGCCACTGGTGACTGTCGTGAGTCATGTCTGACGAGAGAAGCTGACAAATCCCATCAATTCCAATTCCAACCATTTCTGCTTCACCTTCGTCTACCTCCGACACTCCGAACTAGCGTGCAGGGAGTCAGGGGAGAGATTGGAGCGATGAACGTGAGCCGCCCATCGGTTCACCCCGTGGAGGCCCCGCCCTTGACTGACTTGGCAGCCCAGAATGCTCTCAGAGTGAGGATGAAGGACGTTCAAGGCATGCCTGGCACCACAGGTGGTCTCGTGTTGCGTCTTTGCCAGCTCGGCTTTGCAGCCATTTCTCTCTCAGTCATGGCCACCACCTCCGATTTTCCCTCTGTCACCGCTTTTTGCTACCTTGTTGCTGCTGTTAGTGTGCAATGTGTGTGGAGCTTGTCACTGGCGATTGTTGATGTGTATGCTCTTTCAGTGAGGCGGAGCTTGCGCAACTGCAAGGTTGTGGGTTTCTTCACCATTGGAGATGGGATCACATCCACGCTTACATTTGCTGCCGCATGTGCTTCTGCTGGAATTACTGTCCTCATTGCCAATGATCTTAACAAATGTGATGTGAACCATTGCAAAAGGTTTGAGACTGCCACGGCTATGGCTTTTATCAGTTGGTTTGCTGTGTCACCATCCTTTCTTTTAAACTTCTGGTCACTGGCTTCCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

272

Amino Acids

29.95

Weight (kDa)

9.4

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016548)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37200 AT2G37200
fragaria_vesca FvH4_6g15940
malus_domestica MD12G1118500.v1.1
prunus_persica Prupe.6G236400_v2.0.a1
pyrus_communis pycom12g11710
rosa_chinensis RchiOBHm_Chr3g0469641
rosa_multiflora Rmu_sc0006483.1_g000020
rosa_roxburghii Rroxscaffold_6G00411610
rosa_rugosa Rorug03G0102800
rosa_samantha Rh3AG152500 Rh3CG167300 Rh3DG199300
rosa_wichuraiana Rw3G014380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 584
AccB1I GGYRCC 1 cut(s) 386
AccI GTMKAC 1 cut(s) 223
AciI CCGC 5 cut(s) 289, 317, 483, 574, 651
AclWI GGATC 1 cut(s) 632
AcoI YGGCCR 1 cut(s) 453
AdeI CACNNNGTG 1 cut(s) 307
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 2 cut(s) 295, 310
AgsI TTSAA 1 cut(s) 374
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 4 cut(s) 173, 421, 531, 579
AluI AGCT 4 cut(s) 173, 421, 531, 579
Alw26I GTCTC 2 cut(s) 404, 725
AlwI GGATC 1 cut(s) 632
AoxI GGCC 2 cut(s) 312, 453
ApeKI GCWGC 6 cut(s) 124, 127, 335, 431, 503, 647
AspLEI GCGC 1 cut(s) 585
AspS9I GGNCC 1 cut(s) 313
AsuC2I CCSGG 1 cut(s) 811
AsuHPI GGTGA 6 cut(s) 152, 206, 293, 472, 601, 765
BalI TGGCCA 1 cut(s) 455
BanI GGYRCC 1 cut(s) 386
BauI CACGAG 1 cut(s) 401
BbvI GCAGC 6 cut(s) 136, 139, 347, 443, 490, 634
BccI CCATC 4 cut(s) 192, 301, 614, 784
BceAI ACGGC 1 cut(s) 756
BciT130I CCWGG 1 cut(s) 384
BcnI CCSGG 1 cut(s) 811
BcoDI GTCTC 2 cut(s) 404, 725
BfaI CTAG 1 cut(s) 243
BglI GCCNNNNNGGC 1 cut(s) 423
BisI GCNGC 8 cut(s) 125, 128, 289, 336, 432, 504, 648, 651
BlsI GCNGC 8 cut(s) 126, 129, 290, 337, 433, 505, 649, 652
Bme1390I CCNGG 2 cut(s) 384, 811
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 315, 388
BmrFI CCNGG 2 cut(s) 384, 811
BpuMI CCSGG 1 cut(s) 811
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 306, 738
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 310
Bse1I ACTGG 3 cut(s) 142, 543, 807
Bse3DI GCAATG 4 cut(s) 71, 524, 681, 715
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 306, 738
BseGI GGATG 3 cut(s) 366, 629, 776
BseLI CCNNNNNNNGG 2 cut(s) 295, 310
BseMI GCAATG 4 cut(s) 71, 524, 681, 715
BseMII CTCAG 2 cut(s) 364, 459
BseNI ACTGG 3 cut(s) 142, 543, 807
BseXI GCAGC 6 cut(s) 136, 139, 347, 443, 490, 634
BsgI GTGCAG 1 cut(s) 269
BshFI GGCC 2 cut(s) 314, 455
BshNI GGYRCC 1 cut(s) 386
BsiSI CCGG 1 cut(s) 811
BslI CCNNNNNNNGG 2 cut(s) 295, 310
BsmAI GTCTC 2 cut(s) 404, 725
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 2 cut(s) 314, 455
Bso31I GGTCTC 1 cut(s) 404
Bsp143I GATC 3 cut(s) 14, 624, 691
BspACI CCGC 5 cut(s) 289, 317, 483, 574, 651
BspANI GGCC 2 cut(s) 314, 455
BspCNI CTCAG 2 cut(s) 363, 458
BspLI GGNNCC 2 cut(s) 315, 388
BspPI GGATC 1 cut(s) 632
BspT107I GGYRCC 1 cut(s) 386
BspTNI GGTCTC 1 cut(s) 404
BsrDI GCAATG 4 cut(s) 71, 524, 681, 715
BsrI ACTGG 3 cut(s) 142, 543, 807
BssECI CCNNGG 2 cut(s) 306, 738
BssMI GATC 3 cut(s) 14, 624, 691
BssSI CACGAG 1 cut(s) 401
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 2 cut(s) 146, 676
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 5 cut(s) 132, 248, 380, 419, 581
BstDEI CTNAG 2 cut(s) 350, 445
BstDSI CCRYGG 2 cut(s) 306, 738
BstF5I GGATG 3 cut(s) 366, 629, 776
BstHHI GCGC 1 cut(s) 585
BstKTI GATC 3 cut(s) 17, 627, 694
BstMAI GTCTC 2 cut(s) 404, 725
BstMBI GATC 3 cut(s) 14, 624, 691
BstMWI GCNNNNNNNGC 5 cut(s) 344, 384, 423, 580, 656
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 2 cut(s) 382, 657
BstSCI CCNGG 2 cut(s) 382, 809
BstV1I GCAGC 6 cut(s) 136, 139, 347, 443, 490, 634
BstXI CCANNNNNNTGG 1 cut(s) 745
BsuRI GGCC 2 cut(s) 314, 455
BtgI CCRYGG 2 cut(s) 306, 738
BtgZI GCGATG 1 cut(s) 290
BtsCI GGATG 3 cut(s) 366, 629, 776
BtsIMutI CAGTG 4 cut(s) 135, 536, 573, 800
Cac8I GCNNGC 5 cut(s) 132, 248, 380, 419, 581
CfoI GCGC 1 cut(s) 585
Cfr13I GGNCC 1 cut(s) 313
CseI GACGC 1 cut(s) 398
Csp6I GTAC 1 cut(s) 73
CspCI CAANNNNNGTGG 2 cut(s) 506, 541
CviAII CATG 4 cut(s) 156, 379, 451, 654
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 2 cut(s) 350, 445
DpnI GATC 3 cut(s) 16, 626, 693
DpnII GATC 3 cut(s) 14, 624, 691
DraI TTTAAA 1 cut(s) 789
DraIII CACNNNGTG 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 453
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
EciI GGCGGA 1 cut(s) 589
Eco31I GGTCTC 1 cut(s) 404
EcoO109I RGGNCCY 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 382
FaeI CATG 4 cut(s) 159, 382, 454, 657
FatI CATG 4 cut(s) 155, 378, 450, 653
FauI CCCGC 1 cut(s) 324
FauNDI CATATG 1 cut(s) 53
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 8 cut(s) 125, 128, 289, 336, 432, 504, 648, 651
FokI GGATG 3 cut(s) 373, 616, 763
Fsp4HI GCNGC 8 cut(s) 125, 128, 289, 336, 432, 504, 648, 651
FspBI CTAG 1 cut(s) 243
FspI TGCGCA 1 cut(s) 584
GlaI GCGC 1 cut(s) 584
GluI GCNGC 8 cut(s) 125, 128, 289, 336, 432, 504, 648, 651
HaeIII GGCC 2 cut(s) 314, 455
HapII CCGG 1 cut(s) 811
HgaI GACGC 1 cut(s) 398
HhaI GCGC 1 cut(s) 585
Hin1II CATG 4 cut(s) 159, 382, 454, 657
Hin6I GCGC 1 cut(s) 583
HinP1I GCGC 1 cut(s) 583
HinfI GANTC 2 cut(s) 152, 255
HpaII CCGG 1 cut(s) 811
HphI GGTGA 6 cut(s) 152, 206, 293, 472, 601, 765
Hpy166II GTNNAC 4 cut(s) 73, 224, 301, 712
Hpy188I TCNGA 5 cut(s) 162, 231, 239, 353, 466
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 4 cut(s) 73, 224, 301, 712
HpyAV CCTTC 2 cut(s) 227, 358
HpyCH4III ACNGT 2 cut(s) 146, 676
HpyCH4IV ACGT 2 cut(s) 282, 369
HpyCH4V TGCA 6 cut(s) 64, 250, 431, 517, 591, 720
HpyF10VI GCNNNNNNNGC 5 cut(s) 344, 384, 423, 580, 656
HpyF3I CTNAG 2 cut(s) 350, 445
HpySE526I ACGT 2 cut(s) 282, 369
Hsp92II CATG 4 cut(s) 159, 382, 454, 657
HspAI GCGC 1 cut(s) 583
Kzo9I GATC 3 cut(s) 14, 624, 691
LmnI GCTCC 3 cut(s) 272, 528, 576
Lsp1109I GCAGC 6 cut(s) 136, 139, 347, 443, 490, 634
MaeI CTAG 1 cut(s) 243
MaeII ACGT 2 cut(s) 282, 369
MaeIII GTNAC 6 cut(s) 110, 140, 478, 534, 771, 798
MalI GATC 3 cut(s) 16, 626, 693
MboI GATC 3 cut(s) 14, 624, 691
MboII GAAGA 2 cut(s) 41, 598
MfeI CAATTG 1 cut(s) 59
MlsI TGGCCA 1 cut(s) 455
MluCI AATT 5 cut(s) 23, 59, 188, 194, 669
MluNI TGGCCA 1 cut(s) 455
MlyI GAGTC 2 cut(s) 161, 264
MmeI TCCRAC 2 cut(s) 223, 254
MnlI CCTC 8 cut(s) 114, 237, 304, 351, 472, 484, 564, 689
Mox20I TGGCCA 1 cut(s) 455
MscI TGGCCA 1 cut(s) 455
MseI TTAA 2 cut(s) 696, 788
MslI CAYNNNNRTG 1 cut(s) 743
Msp20I TGGCCA 1 cut(s) 455
MspI CCGG 1 cut(s) 811
MspR9I CCNGG 2 cut(s) 384, 811
MunI CAATTG 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 349
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 5 cut(s) 344, 384, 423, 580, 656
NciI CCSGG 1 cut(s) 811
NdeI CATATG 1 cut(s) 53
NdeII GATC 3 cut(s) 14, 624, 691
NlaIII CATG 4 cut(s) 159, 382, 454, 657
NlaIV GGNNCC 2 cut(s) 315, 388
NmeAIII GCCGAG 1 cut(s) 402
NmuCI GTSAC 6 cut(s) 110, 140, 478, 534, 771, 798
NsbI TGCGCA 1 cut(s) 584
NspI RCATGY 2 cut(s) 382, 657
PaeI GCATGC 1 cut(s) 382
PctI GAATGC 1 cut(s) 349
PkrI GCNGC 8 cut(s) 126, 129, 290, 337, 433, 505, 649, 652
PleI GAGTC 2 cut(s) 160, 263
PpsI GAGTC 2 cut(s) 160, 263
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 2 cut(s) 315, 388
PspPI GGNCC 1 cut(s) 313
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 743
SaqAI TTAA 2 cut(s) 696, 788
SatI GCNGC 8 cut(s) 125, 128, 289, 336, 432, 504, 648, 651
Sau3AI GATC 3 cut(s) 14, 624, 691
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 2 cut(s) 161, 264
ScrFI CCNGG 2 cut(s) 384, 811
SmiMI CAYNNNNRTG 1 cut(s) 743
SphI GCATGC 1 cut(s) 382
Sse9I AATT 5 cut(s) 23, 59, 188, 194, 669
SsiI CCGC 5 cut(s) 289, 317, 483, 574, 651
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 382, 809
TaaI ACNGT 2 cut(s) 146, 676
TaiI ACGT 2 cut(s) 285, 372
TasI AATT 5 cut(s) 23, 59, 188, 194, 669
TauI GCSGC 2 cut(s) 291, 653
Tru1I TTAA 2 cut(s) 696, 788
Tru9I TTAA 2 cut(s) 696, 788
TscAI CASTG 4 cut(s) 142, 543, 573, 807
TseFI GTSAC 6 cut(s) 110, 140, 478, 534, 771, 798
TseI GCWGC 6 cut(s) 124, 127, 335, 431, 503, 647
Tsp45I GTSAC 6 cut(s) 110, 140, 478, 534, 771, 798
TspDTI ATGAA 3 cut(s) 51, 293, 377
TspRI CASTG 4 cut(s) 142, 543, 573, 807
XceI RCATGY 2 cut(s) 382, 657
XmiI GTMKAC 1 cut(s) 223
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.