FvH4_6g15940

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016548
Physical Location & Seq
Reverse (-)
9940682 .. 9943873
3192 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15940.t1

Sequence Viewer

Length: 531 bp
ATGAGCGTGAGCCGTCCGTCGGTCCACCCGGTGGAGGCTCCACCGATGACTGACGTGGCGGCCCTCAGAGTCAGGATGAAGGACGTTCAGGGCATGCCCGGCACCGCCGGCAGCCTCGCTCTCCGTCTTTGCCAGCTCGCCTTCGCCGGAGTCTCCCTCGCCGTCATGGCCTCCACCAACGATTTCCCGTCTGTTACTGCGTTTTGCTACCTTGTTGCTGCTGTGAGCTTGCAATGTGTGTGGAGTTTGTCACTGGCGATTGTTGATGTGTATGCGATTTTGGTGCGGCGGAGTTTGCGAAACTGCAAGGTTGTCTGTTTCTTCACCATTGGAGATGGGATCACTTCCACTCTTACATTTGCTGCTGCATGCGCTTCTGCTGGAATTACTGTCCTCATTGCCAATGATCTTAACAAATGTGCTGTGAACCATTGCAAAAGGTTTGAATCTGCGACCGCTATGGCTTTTATCAGTTGGTTTGTTGTGTCACCATCCTTTCTTTTTAACTTTTGGTCGCTGGCTTCACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

177

Amino Acids

18.81

Weight (kDa)

8.9

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 33 - 161 7.7e-27 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016548)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37200 AT2G37200
fragaria_vesca FvH4_6g15940
malus_domestica MD12G1118500.v1.1
prunus_persica Prupe.6G236400_v2.0.a1
pyrus_communis pycom12g11710
rosa_chinensis RchiOBHm_Chr3g0469641
rosa_multiflora Rmu_sc0006483.1_g000020
rosa_roxburghii Rroxscaffold_6G00411610
rosa_rugosa Rorug03G0102800
rosa_samantha Rh3AG152500 Rh3CG167300 Rh3DG199300
rosa_wichuraiana Rw3G014380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 31
AciI CCGC 5 cut(s) 59, 105, 286, 289, 456
AclWI GGATC 1 cut(s) 347
AdeI CACNNNGTG 1 cut(s) 31
AfiI CCNNNNNNNGG 3 cut(s) 19, 31, 34
AgsI TTSAA 1 cut(s) 446
AjiI CACGTC 1 cut(s) 55
AluBI AGCT 2 cut(s) 136, 228
AluI AGCT 2 cut(s) 136, 228
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 347
AoxI GGCC 2 cut(s) 60, 168
ApeKI GCWGC 4 cut(s) 111, 218, 362, 365
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 2 cut(s) 22, 61
AsuC2I CCSGG 2 cut(s) 29, 99
AsuHPI GGTGA 2 cut(s) 316, 480
AvaII GGWCC 1 cut(s) 22
BanI GGYRCC 1 cut(s) 101
BbvI GCAGC 4 cut(s) 123, 205, 349, 352
BccI CCATC 2 cut(s) 329, 499
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BcnI CCSGG 2 cut(s) 29, 99
BcoDI GTCTC 1 cut(s) 157
BglI GCCNNNNNGGC 1 cut(s) 167
BisI GCNGC 6 cut(s) 60, 112, 219, 287, 363, 366
BlsI GCNGC 6 cut(s) 61, 113, 220, 288, 364, 367
Bme1390I CCNGG 2 cut(s) 29, 99
Bme18I GGWCC 1 cut(s) 22
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 22, 61
BmiI GGNNCC 2 cut(s) 39, 103
BmrFI CCNGG 2 cut(s) 29, 99
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BpuMI CCSGG 2 cut(s) 29, 99
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 31, 34
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 258
Bse3DI GCAATG 3 cut(s) 239, 396, 430
BseGI GGATG 2 cut(s) 81, 491
BseLI CCNNNNNNNGG 3 cut(s) 19, 31, 34
BseMI GCAATG 3 cut(s) 239, 396, 430
BseMII CTCAG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 258
BseXI GCAGC 4 cut(s) 123, 205, 349, 352
Bsh1285I CGRYCG 1 cut(s) 456
BshFI GGCC 2 cut(s) 62, 170
BshNI GGYRCC 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 456
BsiSI CCGG 4 cut(s) 29, 99, 108, 147
BslI CCNNNNNNNGG 3 cut(s) 19, 31, 34
BsmAI GTCTC 1 cut(s) 157
BsnI GGCC 2 cut(s) 62, 170
Bsp143I GATC 2 cut(s) 339, 406
BspACI CCGC 5 cut(s) 59, 105, 286, 289, 456
BspANI GGCC 2 cut(s) 62, 170
BspCNI CTCAG 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 39, 103
BspPI GGATC 1 cut(s) 347
BspT107I GGYRCC 1 cut(s) 101
BsrDI GCAATG 3 cut(s) 239, 396, 430
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 1 cut(s) 258
BssAI RCCGGY 1 cut(s) 107
BssMI GATC 2 cut(s) 339, 406
Bst4CI ACNGT 2 cut(s) 391, 528
BstC8I GCNNGC 7 cut(s) 95, 109, 134, 138, 230, 370, 519
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 2 cut(s) 81, 491
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 2 cut(s) 342, 409
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 2 cut(s) 339, 406
BstMCI CGRYCG 1 cut(s) 456
BstMWI GCNNNNNNNGC 5 cut(s) 99, 108, 167, 295, 371
BstNSI RCATGY 2 cut(s) 97, 372
BstSCI CCNGG 2 cut(s) 27, 97
BstV1I GCAGC 4 cut(s) 123, 205, 349, 352
BsuRI GGCC 2 cut(s) 62, 170
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 2 cut(s) 81, 491
BtsIMutI CAGTG 1 cut(s) 251
Cac8I GCNNGC 7 cut(s) 95, 109, 134, 138, 230, 370, 519
CfoI GCGC 1 cut(s) 374
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 22, 61
CspCI CAANNNNNGTGG 2 cut(s) 221, 256
CviAII CATG 3 cut(s) 94, 166, 369
CviJI RGCY 9 cut(s) 12, 38, 62, 114, 136, 170, 228, 464, 521
CviKI_1 RGCY 9 cut(s) 12, 38, 62, 114, 136, 170, 228, 464, 521
DdeI CTNAG 1 cut(s) 65
DpnI GATC 2 cut(s) 341, 408
DpnII GATC 2 cut(s) 339, 406
DraIII CACNNNGTG 1 cut(s) 31
EciI GGCGGA 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 22
FaeI CATG 3 cut(s) 97, 169, 372
FaiI YATR 5 cut(s) 95, 167, 273, 370, 461
FatI CATG 3 cut(s) 93, 165, 368
Fnu4HI GCNGC 6 cut(s) 60, 112, 219, 287, 363, 366
FokI GGATG 2 cut(s) 88, 478
Fsp4HI GCNGC 6 cut(s) 60, 112, 219, 287, 363, 366
GlaI GCGC 1 cut(s) 373
GluI GCNGC 6 cut(s) 60, 112, 219, 287, 363, 366
HaeIII GGCC 2 cut(s) 62, 170
HapII CCGG 4 cut(s) 29, 99, 108, 147
HhaI GCGC 1 cut(s) 374
Hin1II CATG 3 cut(s) 97, 169, 372
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HinfI GANTC 3 cut(s) 69, 150, 446
HpaII CCGG 4 cut(s) 29, 99, 108, 147
HphI GGTGA 2 cut(s) 316, 480
Hpy166II GTNNAC 2 cut(s) 25, 427
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 2 cut(s) 25, 427
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 2 cut(s) 73, 151
HpyCH4III ACNGT 2 cut(s) 391, 528
HpyCH4IV ACGT 2 cut(s) 54, 84
HpyCH4V TGCA 4 cut(s) 232, 306, 368, 435
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 108, 167, 295, 371
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 2 cut(s) 54, 84
Hsp92II CATG 3 cut(s) 97, 169, 372
HspAI GCGC 1 cut(s) 372
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
Kzo9I GATC 2 cut(s) 339, 406
LmnI GCTCC 1 cut(s) 43
Lsp1109I GCAGC 4 cut(s) 123, 205, 349, 352
MaeII ACGT 2 cut(s) 54, 84
MaeIII GTNAC 3 cut(s) 193, 249, 486
MalI GATC 2 cut(s) 341, 408
MboI GATC 2 cut(s) 339, 406
MboII GAAGA 1 cut(s) 313
MluCI AATT 1 cut(s) 384
MlyI GAGTC 2 cut(s) 78, 159
MnlI CCTC 6 cut(s) 28, 74, 125, 167, 181, 404
MroNI GCCGGC 1 cut(s) 107
MseI TTAA 2 cut(s) 411, 504
MspI CCGG 4 cut(s) 29, 99, 108, 147
MspR9I CCNGG 2 cut(s) 29, 99
MwoI GCNNNNNNNGC 5 cut(s) 99, 108, 167, 295, 371
NaeI GCCGGC 1 cut(s) 109
NciI CCSGG 2 cut(s) 29, 99
NdeII GATC 2 cut(s) 339, 406
NgoMIV GCCGGC 1 cut(s) 107
NlaIII CATG 3 cut(s) 97, 169, 372
NlaIV GGNNCC 2 cut(s) 39, 103
NmuCI GTSAC 2 cut(s) 249, 486
NspI RCATGY 2 cut(s) 97, 372
PaeI GCATGC 2 cut(s) 97, 372
PdiI GCCGGC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 446
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 6 cut(s) 61, 113, 220, 288, 364, 367
PleI GAGTC 2 cut(s) 77, 158
PpsI GAGTC 2 cut(s) 77, 158
PspN4I GGNNCC 2 cut(s) 39, 103
PspPI GGNCC 2 cut(s) 22, 61
SaqAI TTAA 2 cut(s) 411, 504
SatI GCNGC 6 cut(s) 60, 112, 219, 287, 363, 366
Sau3AI GATC 2 cut(s) 339, 406
Sau96I GGNCC 2 cut(s) 22, 61
SchI GAGTC 2 cut(s) 78, 159
ScrFI CCNGG 2 cut(s) 29, 99
SetI ASST 7 cut(s) 57, 87, 138, 213, 230, 312, 443
SinI GGWCC 1 cut(s) 22
SphI GCATGC 2 cut(s) 97, 372
Sse9I AATT 1 cut(s) 384
SsiI CCGC 5 cut(s) 59, 105, 286, 289, 456
StyD4I CCNGG 2 cut(s) 27, 97
TaaI ACNGT 2 cut(s) 391, 528
TaiI ACGT 2 cut(s) 57, 87
TaqII GACCGA 1 cut(s) 10
TasI AATT 1 cut(s) 384
TauI GCSGC 2 cut(s) 62, 289
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 2 cut(s) 411, 504
Tru9I TTAA 2 cut(s) 411, 504
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 2 cut(s) 249, 486
TseI GCWGC 4 cut(s) 111, 218, 362, 365
Tsp45I GTSAC 2 cut(s) 249, 486
TspDTI ATGAA 1 cut(s) 92
TspGWI ACGGA 2 cut(s) 6, 113
TspRI CASTG 1 cut(s) 258
Van91I CCANNNNNTGG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 22
XceI RCATGY 2 cut(s) 97, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.