AT2G38620
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
16152473 .. 16154086
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38620.4

Sequence Viewer

Length: 774 bp
ATGGAGAAATACGAGAAGCTCGAAAAGGTCGGTGAAGGAACCTATGGAAAAGTCTACAAAGCAATGGAGAAAACCACCGGAAAACTCGTCGCTCTGAAGAAAACTAGGCTCGAAATGGACGAAGAAGGTATACCACCAACGGCTCTCCGTGAGATCTCTCTTCTCCAAATGCTTTCTCAATCAATCTACATCGTTCGTCTCCTCTGCGTCGAACATGTTATTCAATCGAAAGATTCGACTGTTTCTCACTCTCCCAAATCCAATCTCTATCTCGTTTTTGAGTATCTCGACACTGATCTCAAGAAATTTATAGATTCTCATAGAAAGGGCTCGAATCCTAGACCGCTTGAGGCTTCTCTTGTGCAGAGGTTTATGTTTCAGCTTTTTAAAGGTGTGGCTCATTGTCATAGCCATGGTGTGCTTCACCGTGATCTTAAACCGCAGAATCTTCTATTGGATAAGGATAAAGGGATTCTTAAGATTGCTGATTTGGGTCTTAGTCGTGCTTTTACTGTGCCTCTTAAGGCTTATACACATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTTTGCTTGGTTCTACTCATTACTCTACTGCTGTTGATATTTGGTCTGTTGGATGCATCTTTGCCGAGATGATTAGGAGGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGCAACTACTTCATATTTTCAGGTATTTGCTTCTTGTTTTTGATGCCAATGTGTATGTATACAGGAACCAGTTTAGGACTTTAGCCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000278 GO:0000307 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010033 GO:0010103 GO:0010154 GO:0010374 GO:0010376 GO:0010389 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022414 GO:0023052 GO:0030154 GO:0030332 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0040007 GO:0042023 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0060560 GO:0061458 GO:0061695 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097472 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902806 GO:1902911 GO:1903047 GO:1990234 GO:2000026 GO:2000037 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

257

Amino Acids

29.6

Weight (kDa)

9.07

Isoelectric Point (pI)

23.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 45 2.8e-07 Protein kinase domain
Pkinase PF00069 50 - 241 2.9e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 52 - 155 8.8e-16 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38620 AT2G38620 AT2G38620 AT2G38620 AT3G54180
fragaria_vesca FvH4_6g09190
malus_domestica MD12G1195200.v1.1
prunus_persica Prupe.6G299900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0459391
rosa_laevigata RLG00000025084
rosa_multiflora Rmu_sc0025882.1_g000001
rosa_roxburghii Rroxscaffold_6G00420190
rosa_rugosa Rorug03G0036200
rosa_samantha Rh3AG094100 Rh3DG097800
rosa_wichuraiana Rw3G008100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 54, 130, 741
AciI CCGC 2 cut(s) 344, 440
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 2 cut(s) 116, 588
AflII CTTAAG 2 cut(s) 476, 521
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 1 cut(s) 664
AjuI GAANNNNNNNTTGG 4 cut(s) 437, 469, 561, 593
AluBI AGCT 4 cut(s) 19, 382, 563, 656
AluI AGCT 4 cut(s) 19, 382, 563, 656
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 305
AsuHPI GGTGA 3 cut(s) 44, 416, 680
BanII GRGCYC 2 cut(s) 332, 565
BarI GAAGNNNNNNTAC 2 cut(s) 114, 146
Bbv12I GWGCWC 1 cut(s) 565
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 1 cut(s) 666
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 2 cut(s) 105, 339
BfrI CTTAAG 2 cut(s) 476, 521
BglII AGATCT 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 666
BmiI GGNNCC 2 cut(s) 40, 749
BmrFI CCNGG 1 cut(s) 666
BmsI GCATC 3 cut(s) 614, 636, 715
BplI GAGNNNNNCTC 2 cut(s) 640, 672
BpuEI CTTGAG 2 cut(s) 284, 368
BsaJI CCNNGG 2 cut(s) 412, 664
BsaWI WCCGGW 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 751
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 2 cut(s) 412, 664
BseGI GGATG 1 cut(s) 629
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 666
BseNI ACTGG 1 cut(s) 751
BseRI GAGGAG 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 565
BsiSI CCGG 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 332, 565
Bsp143I GATC 3 cut(s) 153, 295, 430
Bsp19I CCATGG 1 cut(s) 412
BspACI CCGC 2 cut(s) 344, 440
BspCNI CTCAG 1 cut(s) 667
BspLI GGNNCC 2 cut(s) 40, 749
BspTI CTTAAG 2 cut(s) 476, 521
BsrDI GCAATG 1 cut(s) 69
BsrI ACTGG 1 cut(s) 751
BssECI CCNNGG 2 cut(s) 412, 664
BssMI GATC 3 cut(s) 153, 295, 430
BssNAI GTATAC 2 cut(s) 131, 742
BssT1I CCWWGG 1 cut(s) 412
Bst1107I GTATAC 2 cut(s) 131, 742
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 3 cut(s) 241, 428, 514
Bst6I CTCTTC 1 cut(s) 165
BstAFI CTTAAG 2 cut(s) 476, 521
BstC8I GCNNGC 1 cut(s) 654
BstDEI CTNAG 2 cut(s) 497, 675
BstDSI CCRYGG 1 cut(s) 412
BstF5I GGATG 1 cut(s) 629
BstKTI GATC 3 cut(s) 156, 298, 433
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 3 cut(s) 153, 295, 430
BstNI CCWGG 1 cut(s) 666
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 664
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BstZ17I GTATAC 2 cut(s) 131, 742
BtgI CCRYGG 1 cut(s) 412
BtsCI GGATG 1 cut(s) 629
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 654
CseI GACGC 1 cut(s) 196
CviAII CATG 3 cut(s) 215, 413, 536
DdeI CTNAG 2 cut(s) 497, 675
DpnI GATC 3 cut(s) 155, 297, 432
DpnII GATC 3 cut(s) 153, 295, 430
DraI TTTAAA 1 cut(s) 388
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 563
Eco130I CCWWGG 1 cut(s) 412
Eco24I GRGCYC 2 cut(s) 332, 565
Eco53kI GAGCTC 1 cut(s) 563
Eco57I CTGAAG 2 cut(s) 116, 588
EcoICRI GAGCTC 1 cut(s) 563
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 412
EcoT22I ATGCAT 1 cut(s) 629
EcoT38I GRGCYC 2 cut(s) 332, 565
ErhI CCWWGG 1 cut(s) 412
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 3 cut(s) 218, 416, 539
FalI AAGNNNNNCTT 4 cut(s) 459, 491, 561, 593
FatI CATG 3 cut(s) 214, 412, 535
FblI GTMKAC 3 cut(s) 54, 130, 741
FokI GGATG 1 cut(s) 636
FriOI GRGCYC 2 cut(s) 332, 565
FspBI CTAG 2 cut(s) 105, 339
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 196
Hin1II CATG 3 cut(s) 218, 416, 539
HinfI GANTC 6 cut(s) 233, 314, 334, 445, 472, 671
HpaII CCGG 1 cut(s) 78
HphI GGTGA 3 cut(s) 44, 416, 680
Hpy166II GTNNAC 3 cut(s) 55, 131, 742
Hpy188I TCNGA 2 cut(s) 96, 676
Hpy188III TCNNGA 3 cut(s) 287, 301, 566
Hpy8I GTNNAC 3 cut(s) 55, 131, 742
Hpy99I CGWCG 2 cut(s) 92, 212
HpyAV CCTTC 2 cut(s) 29, 119
HpyCH4III ACNGT 3 cut(s) 241, 428, 514
HpyCH4V TGCA 2 cut(s) 364, 627
HpyF3I CTNAG 2 cut(s) 497, 675
Hsp92II CATG 3 cut(s) 218, 416, 539
Kzo9I GATC 3 cut(s) 153, 295, 430
LmnI GCTCC 1 cut(s) 568
LpnPI CCDG 7 cut(s) 91, 579, 651, 678, 688, 730, 764
LweI GCATC 3 cut(s) 614, 636, 715
MaeI CTAG 2 cut(s) 105, 339
MaeIII GTNAC 1 cut(s) 544
MalI GATC 3 cut(s) 155, 297, 432
MboI GATC 3 cut(s) 153, 295, 430
MboII GAAGA 4 cut(s) 109, 134, 152, 440
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 2 cut(s) 332, 565
MluCI AATT 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 601
MnlI CCTC 5 cut(s) 212, 343, 360, 528, 642
Mph1103I ATGCAT 1 cut(s) 629
MseI TTAA 4 cut(s) 387, 435, 477, 522
MslI CAYNNNNRTG 1 cut(s) 411
MspCI CTTAAG 2 cut(s) 476, 521
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 666
MvaI CCWGG 1 cut(s) 666
NcoI CCATGG 1 cut(s) 412
NdeII GATC 3 cut(s) 153, 295, 430
NlaIII CATG 3 cut(s) 218, 416, 539
NlaIV GGNNCC 2 cut(s) 40, 749
NmeAIII GCCGAG 1 cut(s) 661
NsiI ATGCAT 1 cut(s) 629
NspI RCATGY 1 cut(s) 218
PciI ACATGT 1 cut(s) 214
PcsI WCGNNNNNNNCGW 3 cut(s) 18, 117, 233
PfeI GAWTC 6 cut(s) 233, 314, 334, 445, 472, 671
PscI ACATGT 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 565
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 2 cut(s) 40, 749
PsuI RGATCY 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 411
SacI GAGCTC 1 cut(s) 565
SaqAI TTAA 4 cut(s) 387, 435, 477, 522
Sau3AI GATC 3 cut(s) 153, 295, 430
ScrFI CCNGG 1 cut(s) 666
SduI GDGCHC 2 cut(s) 332, 565
SfaNI GCATC 3 cut(s) 614, 636, 715
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 4 cut(s) 299, 347, 476, 521
SmoI CTYRAG 4 cut(s) 299, 347, 476, 521
Sse9I AATT 1 cut(s) 305
SsiI CCGC 2 cut(s) 344, 440
SspMI CTAG 2 cut(s) 105, 339
SstI GAGCTC 1 cut(s) 565
StyD4I CCNGG 1 cut(s) 664
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 3 cut(s) 241, 428, 514
TaqI TCGA 7 cut(s) 21, 111, 210, 227, 236, 288, 332
TasI AATT 1 cut(s) 305
TfiI GAWTC 6 cut(s) 233, 314, 334, 445, 472, 671
Tru1I TTAA 4 cut(s) 387, 435, 477, 522
Tru9I TTAA 4 cut(s) 387, 435, 477, 522
TscAI CASTG 1 cut(s) 298
TspDTI ATGAA 1 cut(s) 683
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 1 cut(s) 298
Vha464I CTTAAG 2 cut(s) 476, 521
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 218
XmiI GTMKAC 3 cut(s) 54, 130, 741
XspI CTAG 2 cut(s) 105, 339
Zsp2I ATGCAT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.